FastQCFastQC Report
Wed 13 Sep 2023
stdin:SRR20982548

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR20982548
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40547
Total Bases24.4 Mbp
Sequences flagged as poor quality0
Sequence length602
%GC52

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCATGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGA2569363.36597035539005No Hit
AGCATGACTCCTACGGGAGGCAGCAGTGGGGAATATTGGACAATGGGGGG621715.332823636767209No Hit
AGCATGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGA19094.7081165067699215No Hit
AGCATGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGACGA16814.145806101561151No Hit
AGCATGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGC12683.127235060547019No Hit
AGCATGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGGGGG5261.2972599699114609No Hit
AGCATGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGCGA4061.0013071250647396No Hit
AGCATGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGGGG3030.7472809332379707No Hit
AGCATGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGACGC1650.4069351616642415No Hit
AGCATGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCGCAATGGGCGA1480.36500850864428935No Hit
AGCATGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGC1450.3576096875231213No Hit
AGCATGACTCCTACGGGAGGCAGCAGTGAGGAATATTGGGCAATGGAGGC1210.2984191185537771No Hit
AGCATGACTCCTACGGGAGGCAGCAGTGGGGGATATTGCACAATGGGGGG1150.283621476311441No Hit
AGCATGACTCCTACGGGAGGCAGCAGTAGGGAATATTGCTCAATGGGGGA1100.27129010777616097No Hit
AGCATGACTCCTACGGGAGGCAGCAGTGGGGAATATTGGGCAATGGGCGC810.19976817027153676No Hit
AGCATGACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGA700.1726391594939206No Hit
AGCATGACTCCTACGGGAGGCAGCAGTGGGGGATATTGCACAATGGGGGA670.16524033837275262No Hit
AGCATGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGGGA630.15537524354452859No Hit
AGCATGACTCCTACGGGAGGCAGCAGTAGGGAATTTTCGGCAATGGGCGA430.10604976940340839No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)