FastQCFastQC Report
Wed 13 Sep 2023
stdin:SRR20982549

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR20982549
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42983
Total Bases25.8 Mbp
Sequences flagged as poor quality0
Sequence length602
%GC51

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGTCACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGA1322730.772631040178677No Hit
TCTGTCACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGA1139026.49884838191843No Hit
TCTGTCACTCCTACGGGAGGCAGCAGTAGGGAATATTGCTCAATGGGGGA976422.715957471558525No Hit
TCTGTCACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGG27246.337389200381546No Hit
TCTGTCACTCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGGGGC10872.528906777097922No Hit
TCTGTCACTCCTACGGGAGGCAGCAGTGGGGGATATTGCACAATGGAGGA6971.621571318893516No Hit
TCTGTCACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGCGA6611.5378172765977247No Hit
TCTGTCACTCCTACGGGAGGCAGCAGTGGGGGATATTGCACAATGGGCGA6441.498266756624712No Hit
TCTGTCACTCCTACGGGAGGCAGCAGTGGGGGATATTGCACAATGGGGGG2940.6839913454156294No Hit
TCTGTCACTCCTACGGGAGGCAGCAGTGGGGGATATTGCACAATGGGGGA2670.6211758136937859No Hit
TCTGTCACTCCTACGGGAGGCAGCAGTGGGGAATTTTGGACAATGGGCGA1330.3094246562594514No Hit
TCTGTCACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGA900.2093851057394784No Hit
TCTGTCACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGGGA720.16750808459158273No Hit
TCTGTCACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGG710.1651815834166996No Hit
TCTGTCACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGACGC690.16052858106693343No Hit
TCTGTCACTCCTACGGGAGGCAGCAGTGGGGAATATTGCTCAATGGGGGA590.1372635693181025No Hit
TCTGTCACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGC560.13028406579345322No Hit
TCTGTCACTCCTACGGGAGGCAGCAGTGGGGAATATTGGGCAATGGGCGC550.12795756461857014No Hit
TCTGTCACTCCTACGGGAGGCAGCAGTAGGGAATATTGCACAATGGGGGA470.1093455552195054No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)