FastQCFastQC Report
Wed 13 Sep 2023
stdin:SRR20982550

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR20982550
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43725
Total Bases26.3 Mbp
Sequences flagged as poor quality0
Sequence length602
%GC52

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTATGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGA1611736.85991995425958No Hit
CCTATGACTCCTACGGGAGGCAGCAGTAGGGAATATTGCTCAATGGGGGA1383731.64551172098342No Hit
CCTATGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGA34517.892510005717552No Hit
CCTATGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGGGGC31187.13093196112064No Hit
CCTATGACTCCTACGGGAGGCAGCAGTGGGGGATATTGCACAATGGAGGA18194.160091480846198No Hit
CCTATGACTCCTACGGGAGGCAGCAGTGGGGGATATTGCACAATGGGGGG12152.778730703259005No Hit
CCTATGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGG8772.005717552887364No Hit
CCTATGACTCCTACGGGAGGCAGCAGTGGGGAATATTGGGCAATGGGCGC4370.9994282447112636No Hit
CCTATGACTCCTACGGGAGGCAGCAGTGGGGGATATTGCACAATGGGGGA3280.7501429388221842No Hit
CCTATGACTCCTACGGGAGGCAGCAGTGGGGGATATTGCACAATGGGCGA3090.7066895368782161No Hit
CCTATGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGC1220.27901658090337333No Hit
CCTATGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGACGC1150.2630074328187536No Hit
CCTATGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGGGGG860.19668381932532877No Hit
CCTATGACTCCTACGGGAGGCAGCAGTAGGGAATATTGCACAATGGGGGA750.17152658662092624No Hit
CCTATGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGGGG660.1509433962264151No Hit
CCTATGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCTCAATGGGGGA610.13950829045168667No Hit
CCTATGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCGCAATGGGCGA550.12578616352201258No Hit
CCTATGACTCCTACGGGAGGCAGCAGTGGGGAATTTTGGACAATGGGCGA510.11663807890222985No Hit
CCTATGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGCGA480.1097770154373928No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)