FastQCFastQC Report
Wed 13 Sep 2023
stdin:SRR20982551

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR20982551
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44722
Total Bases26.9 Mbp
Sequences flagged as poor quality0
Sequence length602
%GC52

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCAGTTACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGACGC1359630.401144850409196No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGC38728.65793121953401No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGC33487.486248378873932No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTAGGGAATCTTTCACAATGGGCGA23535.26139260319306No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGGGA17153.8348016636107505No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGA15413.44573140736103No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGA15033.36076204105362No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGC14563.255668351147086No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTCGGGAATATTGCGCAATGGAGGA12942.893430526362864No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTAGGGAATATTGCTCAATGGGGGA12282.745852153302625No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGG9562.1376503734180043No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTGGGGAATTTTGCGCAATGGGGGA9492.1219981217297974No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGGGC8391.8760341666293996No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGA7851.7552882250346586No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGACGA7671.7150395778364116No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGA6401.4310630114932248No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTGGGGAATATTGGACAATGGGGGA5781.2924287822548186No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGG5311.1873350923482848No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTTAGGAATATTCGTCAATGGGGGA5081.1359062653727472No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTGGGGAATATTGGGCAATGGGCGC5021.122490049639998No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGG3940.8809981664505165No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGA3870.8653459147623093No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGCGA3860.8631098788068512No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTCGGGAATATTGCACAATGGAGGA3460.7736684405885247No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTGGGGAATATTGGACAATGGGGGG2600.5813693484191226No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTGGGGGATATTGCACAATGGGGGG2580.5768972765082062No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGAGA2490.5567729529090828No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGGGG2260.505344125933545No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTGGGGGATATTGCACAATGGGGGA2240.5008720540226287No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTAGGGAATTTTCGTCAATGGGGGG1530.3421135011850991No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTGGGGAATATTGGGCAATGGAGGA1440.32198917758597556No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTGGGGAATTTTGCGCAATGCTCGA1410.31528106971960107No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTGGGGGATATTGGACAATGGGGGG1170.2616162067886052No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTGGGGAATATTGGGCAATGGAGGC1110.24819999105585616No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGT1060.23701981127856536No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTAGGGAATTTTCGTCAATGGAGGG850.1900630562139439No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGA650.14534233710478064No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTAGGGAATTTTCGTCAATGGGGGA610.136398193282948No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGT600.13416215732748984No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTGGGGGATATTGCACAATGGAGGA560.12521801350565717No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGC560.12521801350565717No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGG520.1162738696838245No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTAGGGAATTTTCGGCAATGGACGA480.10732972586199187No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)