FastQCFastQC Report
Thu 27 Jul 2023
db.trnL-entrez-ref.fastq

Summary

[OK]Basic Statistics

MeasureValue
Filenamedb.trnL-entrez-ref.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49964
Total Bases10.4 Mbp
Sequences flagged as poor quality0
Sequence length12-154373
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCCTTGGTGGTGAAATGGTAGACACGCGAGACTCAAAATCTCGTGCTAA595911.926587142742774No Hit
CCTTGGTGGTGAAATGGTAGACACGCGAGACTCAAAATCTCGTGCTAAAG516510.33744295893043No Hit
AGCCGCTATGGTGAAATCGGTAGACACGCTGCTCTTAGGAAGCAGTGCTA28285.660075254183012No Hit
TGCCTTGATGGTGAAATGGTAGACACGCGAGACTCAAAATCTCGTGCTAA27815.566007525418301No Hit
CCTTGATGGTGAAATGGTAGACACGCGAGACTCAAAATCTCGTGCTAAAG25145.031622768393243No Hit
GGGGGATATGGCGAAATTGGTAGACGCTACGGACTTAATTGGATTGAGCC22714.545272596269314No Hit
AGCCGCTATGGTGAAATTGGTAGACACGCTGCTCTTAGGAAGCAGTGCTA19543.9108157873669045No Hit
AGGGGATATGGCGAAATTGGTAGACGCTACGGACTTAATTGGATTGAGCC9021.8052998158674245No Hit
GGGGGATATGGCGAAATTGGTAGACGCTACGGACTTGATTGGATTGAGCC8631.7272436154030901No Hit
AGCCGCCATGGTGAAATTGGTAGACACGCTGCTCTTAGGAAGCAGTGCTA7691.539108157873669No Hit
AGCCGCCATGGTGAAATCGGTAGACACGCTGCTCTTAGGAAGCAGTGCTA7491.4990793371227285No Hit
GGGGGATATGGCGAAATCGGTAGACGCTACGGACTTAATTGGATTGAGCC7451.4910735729725404No Hit
AGCCGCCATGGTGAAATTGGTAGACACGCTGCTCTTAGGAAGCAGTGCTC6421.2849251461051958No Hit
TGGGGATATGGCGAAATCGGTAGACGCTACGGACTTGATTGTATTGAGCC5861.172844448002562No Hit
CCGCTATGGTGAAATCGGTAGACACGCTGCTCTTAGGAAGCAGTGCTAGA5601.120806981026339No Hit
AGGGGATATGGCGAAATTGGTAGACGCTACGGACTTGATTGGATTGAGCC5571.1148026579136978No Hit
CCTTGGTGGTGAAATGGTAGACACGCGAGACTCAAAATCTCGTGCTAAAA4770.9546873749099352No Hit
CCGCTATGGTGAAATTGGTAGACACGCTGCTCTTAGGAAGCAGTGCTAGA3420.6844928348410856No Hit
TGCCGCTATGGTGAAATTGGTAGACACGCTGCTCTTAGGAAGCAGTGCTA3210.6424625730525979No Hit
GCCTTGGTGGTGAAATGGTAGACACGCGAGACTCAAAATCTCGTGCTAAA2640.528380433912417No Hit
GGCCGCTATGGTGAAATTGGTAGACACGCTGCTCTTAGGAAGCAGTGCTA2530.5063645824993995No Hit
GGGATATGGCGAAATTGGTAGACGCTACGGACTTAATTGGATTGAGCCTT2480.4963573773116644No Hit
AGGGGATATGGCGAAATCGGTAGACGCTACGGACTTAATTGGATTGAGCC2430.4863501721239292No Hit
AGCCGCTATGGTGAAATCGGTAGACACGCTGCTCTTAGGAAGCAGTGCGA2380.47634296693619405No Hit
CCTTGGTGGTGAAATGGTAGACACGCGAGACTCAAAATCTCGTGCTCAAG2240.4483227924105356No Hit
ATGCCTTGGTGGTGAAATGGTAGACACGCGAGACTCAAAATCTCGTGCTA2160.43231126411015935No Hit
TGCCTTGGTGGTGAAATGGTAGACACGCGAGACTCAAAATCTCGTGCTCA2150.4303098230726123No Hit
AGGGGATATGGCGAAATTGGTAGACGCTGCGGACTTAATTGGATTGAGCC2030.4062925306220479No Hit
TGCCTTGGTGGTGAAATGGTAGACACGCGAGACTCAAAATCTTGTGCTAA2010.40228964854695387No Hit
CCTTGGTGGTGAAATGGTAGACACGCGAGACTCAAAATCTCGTGCTAAAT1970.39428388439676565No Hit
AGGGGATATGGCGAAATTGGTAGACGCTACGGACTTGGTTGGATTGAGCC1810.36226082779601315No Hit
AGGGGATATGGCGGAATTGGTAGACGCTACGGACTTAATTGGATTGAGCC1680.3362420943079017No Hit
CCTTGGTGGTGAAATGGTAGACACGCGAGACTCAAAATCTTGTGCTAAAG1670.3342406532703547No Hit
TGCCTTGATGGTGAAATGGTAGACACGCGAGACTCAAAATCTTGTGCTAA1650.3302377711952606No Hit
CGCCGCTATGGTGAAATCGGTAGACACGCTGCTCTTAGGAAGCAGTGCTA1620.3242334480826195No Hit
CCTTGATGGTGAAATGGTAGACACGCGAGACTCAAAATCTTGTGCTAAAG1590.31822912496997835No Hit
CCGCCATGGTGAAATTGGTAGACACGCTGCTCTTAGGAAGCAGTGCTAGA1510.30221759666960213No Hit
CCTTGATGGTGAAATGGTAGACACGCGAGACTCAAAATCTCGTGCTAAAT1400.28020174525658476No Hit
CCTTGATGGTGAAATGGTAGACACGCGAGACTCAAAATCTCGTGCTGAAG1250.2501801296933792No Hit
CCGCCATGGTGAAATCGGTAGACACGCTGCTCTTAGGAAGCAGTGCTAGA1200.24017292450564404No Hit
TGCCTTGATGGTGAAATGGTAGACACGCGAGACTCAAAATCTCGTGCTGA1190.23817148346809702No Hit
CCTTGGTGGTGAAATGGTAGACACGCGAGACTCAAAATCTCGTGCTAAAC1180.23617004243055No Hit
AGCCGCTATGGTGAAATTGGTAGACACGCTGCTCTTAGGAAGCAGTGCGA1160.23216716035545593No Hit
GGGGGATATGGCGAAATTGGTAGACGCTACGGACTTAATTGAATTGAGCC1150.23016571931790888No Hit
GGGGGATATGGCGAAATTGGTAGACGCTACGGACTTAATTAAATTGAGCC1010.20214554479225044No Hit
AGGGGATATGGCGAAATCGGTAGACGCTACGGACTTGATTAAATTGAGCC960.19213833960451523No Hit
TTCTAATATGGCAGATTATATGTAATGGATTTAAACCCCATTTATAAAGG940.18813545752942118No Hit
CGCCGCTATGGTGAAATTGGTAGACACGCTGCTCTTAGGAAGCAGTGCTA920.18413257545432712No Hit
GGGGGATATGGCGGAATTGGTAGACGCTACGGACTTAATTGGATTGAGCC830.1661196061164038No Hit
TGCCTTGATGGTGAAATGGTAGACACGCGAGACTCAAAATCTCGTGCTTA830.1661196061164038No Hit
CCTTGATGGTGAAATGGTAGACACGCGAGACTCAAAATCTCGTGCTAAAC810.16211672404130975No Hit
TGGGGATATGGCGAAATTGGTAGACGCTACGGACTTAATTGGATTGAGCC810.16211672404130975No Hit
GGGGGATATGGCGAAATAGGTAGACGCTACGGACTTAATTGGATTGAGCC810.16211672404130975No Hit
CCGCCATGGTGAAATTGGTAGACACGCTGCTCTTAGGAAGCAGTGCGAGA770.1541109598911216No Hit
AGCCGCTATGGTGAAATAGGTAGACACGCTGCTCTTAGGAAGCAGTGCTA760.15210951885357457No Hit
GGCCGCTATGGTGAAATCGGTAGACACGCTGCTCTTAGGAAGCAGTGCTA740.14810663677848052No Hit
GGGGGATATGGCGAAATTGGTAGACGCTACGGACTTGATTGAATTGAGCC740.14810663677848052No Hit
ATGCCTTGAAGAGGACTCGAACCTCCACGCTCTTTAGCACGAGATTTTGA720.14410375470338643No Hit
CCTTGGTGGTGAAATGGTAGACACGCGAGACTCAAAATCTTGTGCTCAAG720.14410375470338643No Hit
TGCCTTGGTGGTGAAATGGTAGACACGCGAGACTCAAAATCTTGTGCTCA700.14010087262829238No Hit
AGCCGCCATGGTGAAATTGGTAGACACGCTGTTCTTAGGAAGCAGTGCTA690.13809943159074534No Hit
AGCCGCTATGGTGAAATTGGTAGACACGCTGCTCTTAGGAAGCAGTGCTT680.1360979905531983No Hit
ATGCCTTGATGGTGAAATGGTAGACACGCGAGACTCAAAATCTCGTGCTA580.11608358017772796No Hit
CGCCGCCATGGTGAAATTGGTAGACACGCTGCTCTTAGGAAGCAGTGCTA540.10807781602753984No Hit
AGCCGCCGTGGTGAAATCGGTAGACACGCTGCTCTTAGGAAGCAGTGCTA540.10807781602753984No Hit
GGGATATGGCGGAATTGGTAGACGCTACGGACTTGATCGAATTGAGCCTT520.10407493395244577No Hit
CCTTGATGGTGAAATGGTAGACACGCGAGACTCAAAATCTCGTGCTAAAA510.10207349291489873No Hit
GGGGGATATGGCGGAATCGGTAGACGCTACGGACTTAATTGGATTGAGCC510.10207349291489873No Hit
AGGGGATATGGCGAAATCGGTAGACGCTACGGACTTAATTGGCTTGAGCC510.10207349291489873No Hit
GCCTTGATGGTGAAATGGTAGACACGCGAGACTCAAAATCTCGTGCTAAA510.10207349291489873No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)