{
    "report_data_sources": {
        "FastQC": {
            "all_sections": {
                "SRR6179179": "/home/baumlerc/dissertation-project/seqs/qc/fastqc/PRJNA414360/SRR6179179_fastqc.zip"
            }
        }
    },
    "report_general_stats_data": [
        {
            "SRR6179179": {
                "percent_gc": 52.0,
                "avg_sequence_length": 600.7032782938758,
                "median_sequence_length": 600,
                "total_sequences": 303237.0,
                "percent_duplicates": 96.03313579807214,
                "percent_fails": 45.45454545454545
            }
        }
    ],
    "report_general_stats_headers": [
        {
            "percent_duplicates": {
                "title": "% Dups",
                "description": "% Duplicate Reads",
                "max": 100,
                "min": 0,
                "suffix": "%",
                "scale": "RdYlGn-rev",
                "namespace": "FastQC",
                "rid": "mqc-generalstats-fastqc-percent_duplicates",
                "format": "{:,.1f}",
                "colour": "55,126,184",
                "hidden": null,
                "ceiling": null,
                "floor": null,
                "minRange": null,
                "shared_key": null,
                "modify": null,
                "placement": 1000.0,
                "dmax": 100.0,
                "dmin": 0.0
            },
            "percent_gc": {
                "title": "% GC",
                "description": "Average % GC Content",
                "max": 100,
                "min": 0,
                "suffix": "%",
                "scale": "Set1",
                "format": "{:,.0f}",
                "namespace": "FastQC",
                "rid": "mqc-generalstats-fastqc-percent_gc",
                "colour": "55,126,184",
                "hidden": null,
                "ceiling": null,
                "floor": null,
                "minRange": null,
                "shared_key": null,
                "modify": null,
                "placement": 1000.0,
                "dmax": 100.0,
                "dmin": 0.0
            },
            "avg_sequence_length": {
                "title": "Average Read Length",
                "description": "Average Read Length (bp)",
                "min": 0,
                "suffix": " bp",
                "scale": "RdYlGn",
                "format": "{:,.0f}",
                "hidden": true,
                "namespace": "FastQC",
                "rid": "mqc-generalstats-fastqc-avg_sequence_length",
                "colour": "55,126,184",
                "max": null,
                "ceiling": null,
                "floor": null,
                "minRange": null,
                "shared_key": null,
                "modify": null,
                "placement": 1000.0,
                "dmax": 600.7032782938758,
                "dmin": 0.0
            },
            "median_sequence_length": {
                "title": "Median Read Length",
                "description": "Median Read Length (bp)",
                "min": 0,
                "suffix": " bp",
                "scale": "RdYlGn",
                "format": "{:,.0f}",
                "hidden": true,
                "namespace": "FastQC",
                "rid": "mqc-generalstats-fastqc-median_sequence_length",
                "colour": "55,126,184",
                "max": null,
                "ceiling": null,
                "floor": null,
                "minRange": null,
                "shared_key": null,
                "modify": null,
                "placement": 1000.0,
                "dmax": 600.0,
                "dmin": 0.0
            },
            "percent_fails": {
                "title": "% Failed",
                "description": "Percentage of modules failed in FastQC report (includes those not plotted here)",
                "max": 100,
                "min": 0,
                "suffix": "%",
                "scale": "Reds",
                "format": "{:,.0f}",
                "hidden": true,
                "namespace": "FastQC",
                "rid": "mqc-generalstats-fastqc-percent_fails",
                "colour": "55,126,184",
                "ceiling": null,
                "floor": null,
                "minRange": null,
                "shared_key": null,
                "modify": null,
                "placement": 1000.0,
                "dmax": 100.0,
                "dmin": 0.0
            },
            "total_sequences": {
                "title": "M Seqs",
                "description": "Total Sequences (millions)",
                "min": 0,
                "scale": "Blues",
                "modify": 1e-06,
                "shared_key": "read_count",
                "namespace": "FastQC",
                "rid": "mqc-generalstats-fastqc-total_sequences",
                "format": "{:,.1f}",
                "colour": "55,126,184",
                "hidden": null,
                "max": null,
                "ceiling": null,
                "floor": null,
                "minRange": null,
                "placement": 1000.0,
                "dmax": 0.303237,
                "dmin": 0.0
            }
        }
    ],
    "report_multiqc_command": "/home/baumlerc/miniconda3/e535cf4f6134cf51c3e2bd2adb07af7f_/bin/multiqc qc/fastqc/PRJNA414360/SRR6179179_fastqc.zip --outdir /home/baumlerc/public_html/multiqc_report/ --filename multiqc_PRJNA414360_report.html --interactive --force",
    "report_plot_data": {
        "fastqc_sequence_counts_plot": {
            "plot_type": "bar_graph",
            "samples": [
                [
                    "SRR6179179"
                ]
            ],
            "datasets": [
                [
                    {
                        "name": "Unique Reads",
                        "data": [
                            12029.0
                        ]
                    },
                    {
                        "name": "Duplicate Reads",
                        "data": [
                            291208.0
                        ]
                    }
                ]
            ],
            "config": {
                "id": "fastqc_sequence_counts_plot",
                "title": "FastQC: Sequence Counts",
                "ylab": "Number of reads",
                "cpswitch_counts_label": "Number of reads",
                "hide_zero_cats": false
            }
        },
        "fastqc_per_base_sequence_quality_plot": {
            "plot_type": "xy_line",
            "datasets": [
                [
                    {
                        "name": "SRR6179179",
                        "data": [
                            [
                                1,
                                33.86709735289559
                            ],
                            [
                                2,
                                33.86967619386816
                            ],
                            [
                                3,
                                33.91512909044741
                            ],
                            [
                                4,
                                33.88221753941637
                            ],
                            [
                                5,
                                33.87823715443696
                            ],
                            [
                                6,
                                37.4922024686961
                            ],
                            [
                                7,
                                37.64180162711015
                            ],
                            [
                                8,
                                37.21848257303693
                            ],
                            [
                                9,
                                37.26413663240304
                            ],
                            [
                                14,
                                37.36215204608936
                            ],
                            [
                                24,
                                37.13015891860162
                            ],
                            [
                                34,
                                37.116686288282764
                            ],
                            [
                                44,
                                36.89901760009497
                            ],
                            [
                                54,
                                36.944899863802895
                            ],
                            [
                                64,
                                36.713249372602945
                            ],
                            [
                                74,
                                36.51287408858418
                            ],
                            [
                                84,
                                36.35716419830034
                            ],
                            [
                                94,
                                36.365325801270956
                            ],
                            [
                                104,
                                35.756916537229955
                            ],
                            [
                                114,
                                35.35820397906588
                            ],
                            [
                                124,
                                35.471442798866896
                            ],
                            [
                                134,
                                35.156394833084356
                            ],
                            [
                                144,
                                35.23515764896764
                            ],
                            [
                                154,
                                34.97325985944987
                            ],
                            [
                                164,
                                34.53912649181993
                            ],
                            [
                                174,
                                33.91581700122346
                            ],
                            [
                                184,
                                33.57636864894455
                            ],
                            [
                                194,
                                32.68664674825302
                            ],
                            [
                                204,
                                32.13304576948064
                            ],
                            [
                                214,
                                30.6762482810475
                            ],
                            [
                                224,
                                31.012157487377863
                            ],
                            [
                                234,
                                29.845283721973242
                            ],
                            [
                                244,
                                28.362140833737307
                            ],
                            [
                                254,
                                28.01555746825091
                            ],
                            [
                                264,
                                27.08469744787081
                            ],
                            [
                                274,
                                26.171017718814
                            ],
                            [
                                284,
                                25.998787087327734
                            ],
                            [
                                294,
                                23.510631947948305
                            ],
                            [
                                304,
                                33.0363689127646
                            ],
                            [
                                314,
                                36.90304975975887
                            ],
                            [
                                324,
                                36.537196318391224
                            ],
                            [
                                334,
                                36.033124255945026
                            ],
                            [
                                344,
                                35.95113920794626
                            ],
                            [
                                354,
                                35.41542885597734
                            ],
                            [
                                364,
                                34.973380557121985
                            ],
                            [
                                374,
                                34.67545319337679
                            ],
                            [
                                384,
                                33.693159475921476
                            ],
                            [
                                394,
                                33.70175638197186
                            ],
                            [
                                404,
                                33.831498464897095
                            ],
                            [
                                414,
                                32.66469757978083
                            ],
                            [
                                424,
                                32.50662089388828
                            ],
                            [
                                434,
                                32.071846773315926
                            ],
                            [
                                444,
                                29.992131237283047
                            ],
                            [
                                454,
                                29.90440843300784
                            ],
                            [
                                464,
                                28.941973769691693
                            ],
                            [
                                474,
                                28.6648120117268
                            ],
                            [
                                484,
                                27.075546849493957
                            ],
                            [
                                494,
                                26.778905608484457
                            ],
                            [
                                504,
                                25.053712442742803
                            ],
                            [
                                514,
                                24.064644815771164
                            ],
                            [
                                524,
                                21.278102606212304
                            ],
                            [
                                534,
                                21.564325263737608
                            ],
                            [
                                544,
                                19.33885904424592
                            ],
                            [
                                554,
                                18.405227594257955
                            ],
                            [
                                564,
                                16.33569880984181
                            ],
                            [
                                574,
                                14.6609407822924
                            ],
                            [
                                584,
                                14.594051187684883
                            ],
                            [
                                594,
                                14.889840289938231
                            ],
                            [
                                601,
                                13.218665107016527
                            ]
                        ],
                        "color": "#d9534f"
                    }
                ]
            ],
            "config": {
                "id": "fastqc_per_base_sequence_quality_plot",
                "title": "FastQC: Mean Quality Scores",
                "ylab": "Phred Score",
                "xlab": "Position (bp)",
                "ymin": 0,
                "xDecimals": false,
                "tt_label": "<b>Base {point.x}</b>: {point.y:.2f}",
                "colors": {
                    "SRR6179179": "#d9534f"
                },
                "yPlotBands": [
                    {
                        "from": 28,
                        "to": 100,
                        "color": "#c3e6c3"
                    },
                    {
                        "from": 20,
                        "to": 28,
                        "color": "#e6dcc3"
                    },
                    {
                        "from": 0,
                        "to": 20,
                        "color": "#e6c3c3"
                    }
                ]
            }
        },
        "fastqc_per_sequence_quality_scores_plot": {
            "plot_type": "xy_line",
            "datasets": [
                [
                    {
                        "name": "SRR6179179",
                        "data": [
                            [
                                17.0,
                                10.0
                            ],
                            [
                                18.0,
                                44.0
                            ],
                            [
                                19.0,
                                192.0
                            ],
                            [
                                20.0,
                                561.0
                            ],
                            [
                                21.0,
                                1491.0
                            ],
                            [
                                22.0,
                                2828.0
                            ],
                            [
                                23.0,
                                4823.0
                            ],
                            [
                                24.0,
                                7650.0
                            ],
                            [
                                25.0,
                                10625.0
                            ],
                            [
                                26.0,
                                14088.0
                            ],
                            [
                                27.0,
                                17502.0
                            ],
                            [
                                28.0,
                                21890.0
                            ],
                            [
                                29.0,
                                27117.0
                            ],
                            [
                                30.0,
                                33303.0
                            ],
                            [
                                31.0,
                                40200.0
                            ],
                            [
                                32.0,
                                46474.0
                            ],
                            [
                                33.0,
                                45933.0
                            ],
                            [
                                34.0,
                                24413.0
                            ],
                            [
                                35.0,
                                3812.0
                            ],
                            [
                                36.0,
                                279.0
                            ],
                            [
                                37.0,
                                2.0
                            ]
                        ],
                        "color": "#5cb85c"
                    }
                ]
            ],
            "config": {
                "id": "fastqc_per_sequence_quality_scores_plot",
                "title": "FastQC: Per Sequence Quality Scores",
                "ylab": "Count",
                "xlab": "Mean Sequence Quality (Phred Score)",
                "ymin": 0,
                "xmin": 0,
                "xDecimals": false,
                "colors": {
                    "SRR6179179": "#5cb85c"
                },
                "tt_label": "<b>Phred {point.x}</b>: {point.y} reads",
                "xPlotBands": [
                    {
                        "from": 28,
                        "to": 100,
                        "color": "#c3e6c3"
                    },
                    {
                        "from": 20,
                        "to": 28,
                        "color": "#e6dcc3"
                    },
                    {
                        "from": 0,
                        "to": 20,
                        "color": "#e6c3c3"
                    }
                ]
            }
        },
        "fastqc_per_sequence_gc_content_plot": {
            "plot_type": "xy_line",
            "datasets": [
                [
                    {
                        "name": "SRR6179179",
                        "data": [
                            [
                                0.0,
                                0.0
                            ],
                            [
                                1.0,
                                0.0
                            ],
                            [
                                2.0,
                                0.0
                            ],
                            [
                                3.0,
                                0.0
                            ],
                            [
                                4.0,
                                0.0
                            ],
                            [
                                5.0,
                                0.0
                            ],
                            [
                                6.0,
                                0.0
                            ],
                            [
                                7.0,
                                0.0
                            ],
                            [
                                8.0,
                                0.0
                            ],
                            [
                                9.0,
                                0.0
                            ],
                            [
                                10.0,
                                0.0
                            ],
                            [
                                11.0,
                                0.0
                            ],
                            [
                                12.0,
                                0.0
                            ],
                            [
                                13.0,
                                0.0
                            ],
                            [
                                14.0,
                                0.0
                            ],
                            [
                                15.0,
                                0.0
                            ],
                            [
                                16.0,
                                0.0
                            ],
                            [
                                17.0,
                                0.0
                            ],
                            [
                                18.0,
                                0.0
                            ],
                            [
                                19.0,
                                0.0
                            ],
                            [
                                20.0,
                                0.0
                            ],
                            [
                                21.0,
                                0.0
                            ],
                            [
                                22.0,
                                0.0
                            ],
                            [
                                23.0,
                                0.0
                            ],
                            [
                                24.0,
                                0.0
                            ],
                            [
                                25.0,
                                0.0
                            ],
                            [
                                26.0,
                                0.0002826374406991517
                            ],
                            [
                                27.0,
                                0.0
                            ],
                            [
                                28.0,
                                0.0008479123220974551
                            ],
                            [
                                29.0,
                                0.002261099525593213
                            ],
                            [
                                30.0,
                                0.0014131872034957582
                            ],
                            [
                                31.0,
                                0.0028263744069915164
                            ],
                            [
                                32.0,
                                0.0036742867290889708
                            ],
                            [
                                33.0,
                                0.017523521323347415
                            ],
                            [
                                34.0,
                                0.24759039805245464
                            ],
                            [
                                35.0,
                                0.1028800284144919
                            ],
                            [
                                36.0,
                                0.03504704264669476
                            ],
                            [
                                37.0,
                                0.07122463505618624
                            ],
                            [
                                38.0,
                                0.028546381510614293
                            ],
                            [
                                39.0,
                                0.04352616586766928
                            ],
                            [
                                40.0,
                                0.10118420377029697
                            ],
                            [
                                41.0,
                                0.08592178197254244
                            ],
                            [
                                42.0,
                                0.18851917294633358
                            ],
                            [
                                43.0,
                                0.16732136489389782
                            ],
                            [
                                44.0,
                                0.0724022910590994
                            ],
                            [
                                45.0,
                                0.12695131711403682
                            ],
                            [
                                46.0,
                                0.4851471669600849
                            ],
                            [
                                47.0,
                                2.371563658666233
                            ],
                            [
                                48.0,
                                4.6918286218462955
                            ],
                            [
                                49.0,
                                4.789479857607985
                            ],
                            [
                                50.0,
                                6.179349472247958
                            ],
                            [
                                51.0,
                                9.756126284295338
                            ],
                            [
                                52.0,
                                9.79197413302395
                            ],
                            [
                                53.0,
                                9.970648101785605
                            ],
                            [
                                54.0,
                                15.055248553713982
                            ],
                            [
                                55.0,
                                15.783039963512968
                            ],
                            [
                                56.0,
                                10.602672525427877
                            ],
                            [
                                57.0,
                                5.671073141389957
                            ],
                            [
                                58.0,
                                1.7411408471869185
                            ],
                            [
                                59.0,
                                0.6405035468644076
                            ],
                            [
                                60.0,
                                0.5294741389097385
                            ],
                            [
                                61.0,
                                0.28970337671662705
                            ],
                            [
                                62.0,
                                0.10598904026218264
                            ],
                            [
                                63.0,
                                0.04324352842697013
                            ],
                            [
                                64.0,
                                0.025154732222224484
                            ],
                            [
                                65.0,
                                0.01582769667915251
                            ],
                            [
                                66.0,
                                0.009044398102372854
                            ],
                            [
                                67.0,
                                0.014979784357055055
                            ],
                            [
                                68.0,
                                0.03504704264669476
                            ],
                            [
                                69.0,
                                0.050874739325847206
                            ],
                            [
                                70.0,
                                0.03650733609030704
                            ],
                            [
                                71.0,
                                0.010174947865169464
                            ],
                            [
                                72.0,
                                0.002261099525593213
                            ],
                            [
                                73.0,
                                0.0005652748813983034
                            ],
                            [
                                74.0,
                                0.0005652748813983034
                            ],
                            [
                                75.0,
                                0.0002826374406991517
                            ],
                            [
                                76.0,
                                0.0002826374406991517
                            ],
                            [
                                77.0,
                                0.0002826374406991517
                            ],
                            [
                                78.0,
                                0.0
                            ],
                            [
                                79.0,
                                0.0
                            ],
                            [
                                80.0,
                                0.0
                            ],
                            [
                                81.0,
                                0.0
                            ],
                            [
                                82.0,
                                0.0
                            ],
                            [
                                83.0,
                                0.0
                            ],
                            [
                                84.0,
                                0.0
                            ],
                            [
                                85.0,
                                0.0
                            ],
                            [
                                86.0,
                                0.0
                            ],
                            [
                                87.0,
                                0.0
                            ],
                            [
                                88.0,
                                0.0
                            ],
                            [
                                89.0,
                                0.0
                            ],
                            [
                                90.0,
                                0.0
                            ],
                            [
                                91.0,
                                0.0
                            ],
                            [
                                92.0,
                                0.0
                            ],
                            [
                                93.0,
                                0.0
                            ],
                            [
                                94.0,
                                0.0
                            ],
                            [
                                95.0,
                                0.0
                            ],
                            [
                                96.0,
                                0.0
                            ],
                            [
                                97.0,
                                0.0
                            ],
                            [
                                98.0,
                                0.0
                            ],
                            [
                                99.0,
                                0.0
                            ],
                            [
                                100.0,
                                0.0
                            ]
                        ],
                        "color": "#d9534f"
                    }
                ],
                [
                    {
                        "name": "SRR6179179",
                        "data": [
                            [
                                0.0,
                                0.0
                            ],
                            [
                                1.0,
                                0.0
                            ],
                            [
                                2.0,
                                0.0
                            ],
                            [
                                3.0,
                                0.0
                            ],
                            [
                                4.0,
                                0.0
                            ],
                            [
                                5.0,
                                0.0
                            ],
                            [
                                6.0,
                                0.0
                            ],
                            [
                                7.0,
                                0.0
                            ],
                            [
                                8.0,
                                0.0
                            ],
                            [
                                9.0,
                                0.0
                            ],
                            [
                                10.0,
                                0.0
                            ],
                            [
                                11.0,
                                0.0
                            ],
                            [
                                12.0,
                                0.0
                            ],
                            [
                                13.0,
                                0.0
                            ],
                            [
                                14.0,
                                0.0
                            ],
                            [
                                15.0,
                                0.0
                            ],
                            [
                                16.0,
                                0.0
                            ],
                            [
                                17.0,
                                0.0
                            ],
                            [
                                18.0,
                                0.0
                            ],
                            [
                                19.0,
                                0.0
                            ],
                            [
                                20.0,
                                0.0
                            ],
                            [
                                21.0,
                                0.0
                            ],
                            [
                                22.0,
                                0.0
                            ],
                            [
                                23.0,
                                0.0
                            ],
                            [
                                24.0,
                                0.0
                            ],
                            [
                                25.0,
                                0.0
                            ],
                            [
                                26.0,
                                0.14285714285714285
                            ],
                            [
                                27.0,
                                0.0
                            ],
                            [
                                28.0,
                                0.42857142857142855
                            ],
                            [
                                29.0,
                                1.1428571428571426
                            ],
                            [
                                30.0,
                                0.7142857142857142
                            ],
                            [
                                31.0,
                                1.4285714285714282
                            ],
                            [
                                32.0,
                                1.8571428571428565
                            ],
                            [
                                33.0,
                                8.857142857142863
                            ],
                            [
                                34.0,
                                125.142857142856
                            ],
                            [
                                35.0,
                                52.00000000000035
                            ],
                            [
                                36.0,
                                17.71428571428569
                            ],
                            [
                                37.0,
                                36.00000000000001
                            ],
                            [
                                38.0,
                                14.428571428571415
                            ],
                            [
                                39.0,
                                21.99999999999996
                            ],
                            [
                                40.0,
                                51.14285714285747
                            ],
                            [
                                41.0,
                                43.428571428571594
                            ],
                            [
                                42.0,
                                95.285714285714
                            ],
                            [
                                43.0,
                                84.57142857142858
                            ],
                            [
                                44.0,
                                36.595238095238116
                            ],
                            [
                                45.0,
                                64.16666666666725
                            ],
                            [
                                46.0,
                                245.21428571428117
                            ],
                            [
                                47.0,
                                1198.6904761903588
                            ],
                            [
                                48.0,
                                2371.4523809525126
                            ],
                            [
                                49.0,
                                2420.8095238097226
                            ],
                            [
                                50.0,
                                3123.3095238106803
                            ],
                            [
                                51.0,
                                4931.166666667629
                            ],
                            [
                                52.0,
                                4949.285714286644
                            ],
                            [
                                53.0,
                                5039.595238096003
                            ],
                            [
                                54.0,
                                7609.57142856752
                            ],
                            [
                                55.0,
                                7977.428571423991
                            ],
                            [
                                56.0,
                                5359.047619047805
                            ],
                            [
                                57.0,
                                2866.404761905568
                            ],
                            [
                                58.0,
                                880.0476190475741
                            ],
                            [
                                59.0,
                                323.73809523810195
                            ],
                            [
                                60.0,
                                267.61904761904475
                            ],
                            [
                                61.0,
                                146.42857142856968
                            ],
                            [
                                62.0,
                                53.57142857142895
                            ],
                            [
                                63.0,
                                21.85714285714282
                            ],
                            [
                                64.0,
                                12.714285714285706
                            ],
                            [
                                65.0,
                                8.000000000000009
                            ],
                            [
                                66.0,
                                4.571428571428571
                            ],
                            [
                                67.0,
                                7.571428571428579
                            ],
                            [
                                68.0,
                                17.71428571428569
                            ],
                            [
                                69.0,
                                25.714285714285662
                            ],
                            [
                                70.0,
                                18.452380952380924
                            ],
                            [
                                71.0,
                                5.142857142857144
                            ],
                            [
                                72.0,
                                1.1428571428571426
                            ],
                            [
                                73.0,
                                0.2857142857142857
                            ],
                            [
                                74.0,
                                0.2857142857142857
                            ],
                            [
                                75.0,
                                0.14285714285714285
                            ],
                            [
                                76.0,
                                0.14285714285714285
                            ],
                            [
                                77.0,
                                0.14285714285714285
                            ],
                            [
                                78.0,
                                0.0
                            ],
                            [
                                79.0,
                                0.0
                            ],
                            [
                                80.0,
                                0.0
                            ],
                            [
                                81.0,
                                0.0
                            ],
                            [
                                82.0,
                                0.0
                            ],
                            [
                                83.0,
                                0.0
                            ],
                            [
                                84.0,
                                0.0
                            ],
                            [
                                85.0,
                                0.0
                            ],
                            [
                                86.0,
                                0.0
                            ],
                            [
                                87.0,
                                0.0
                            ],
                            [
                                88.0,
                                0.0
                            ],
                            [
                                89.0,
                                0.0
                            ],
                            [
                                90.0,
                                0.0
                            ],
                            [
                                91.0,
                                0.0
                            ],
                            [
                                92.0,
                                0.0
                            ],
                            [
                                93.0,
                                0.0
                            ],
                            [
                                94.0,
                                0.0
                            ],
                            [
                                95.0,
                                0.0
                            ],
                            [
                                96.0,
                                0.0
                            ],
                            [
                                97.0,
                                0.0
                            ],
                            [
                                98.0,
                                0.0
                            ],
                            [
                                99.0,
                                0.0
                            ],
                            [
                                100.0,
                                0.0
                            ]
                        ],
                        "color": "#d9534f"
                    }
                ]
            ],
            "config": {
                "id": "fastqc_per_sequence_gc_content_plot",
                "title": "FastQC: Per Sequence GC Content",
                "xlab": "% GC",
                "ylab": "Percentage",
                "ymin": 0,
                "xmax": 100,
                "xmin": 0,
                "yDecimals": false,
                "tt_label": "<b>{point.x}% GC</b>: {point.y}",
                "colors": {
                    "SRR6179179": "#d9534f"
                },
                "data_labels": [
                    {
                        "name": "Percentages",
                        "ylab": "Percentage"
                    },
                    {
                        "name": "Counts",
                        "ylab": "Count"
                    }
                ]
            }
        },
        "fastqc_per_base_n_content_plot": {
            "plot_type": "xy_line",
            "datasets": [
                [
                    {
                        "name": "SRR6179179",
                        "data": [
                            [
                                1,
                                0.0
                            ],
                            [
                                2,
                                0.0
                            ],
                            [
                                3,
                                0.0
                            ],
                            [
                                4,
                                0.0
                            ],
                            [
                                5,
                                0.0
                            ],
                            [
                                6,
                                0.0
                            ],
                            [
                                7,
                                0.0
                            ],
                            [
                                8,
                                0.0
                            ],
                            [
                                9,
                                0.0
                            ],
                            [
                                14,
                                0.0001648875302156399
                            ],
                            [
                                24,
                                0.0
                            ],
                            [
                                34,
                                0.0001648875302156399
                            ],
                            [
                                44,
                                0.0
                            ],
                            [
                                54,
                                6.595501208625596e-05
                            ],
                            [
                                64,
                                0.0035945481587009503
                            ],
                            [
                                74,
                                0.0
                            ],
                            [
                                84,
                                0.0
                            ],
                            [
                                94,
                                0.0
                            ],
                            [
                                104,
                                0.0
                            ],
                            [
                                114,
                                0.0004287075785606638
                            ],
                            [
                                124,
                                0.0
                            ],
                            [
                                134,
                                0.0
                            ],
                            [
                                144,
                                0.0
                            ],
                            [
                                154,
                                0.0
                            ],
                            [
                                164,
                                0.0
                            ],
                            [
                                174,
                                0.0
                            ],
                            [
                                184,
                                0.0
                            ],
                            [
                                194,
                                0.0
                            ],
                            [
                                204,
                                0.0
                            ],
                            [
                                214,
                                0.0
                            ],
                            [
                                224,
                                0.0
                            ],
                            [
                                234,
                                0.0
                            ],
                            [
                                244,
                                0.0
                            ],
                            [
                                254,
                                0.0015829202900701433
                            ],
                            [
                                264,
                                0.003891345713089102
                            ],
                            [
                                274,
                                0.0
                            ],
                            [
                                284,
                                0.0
                            ],
                            [
                                294,
                                0.0
                            ],
                            [
                                304,
                                0.0
                            ],
                            [
                                314,
                                0.0
                            ],
                            [
                                324,
                                0.0
                            ],
                            [
                                334,
                                0.0
                            ],
                            [
                                344,
                                0.0
                            ],
                            [
                                354,
                                0.0
                            ],
                            [
                                364,
                                0.0
                            ],
                            [
                                374,
                                0.0
                            ],
                            [
                                384,
                                0.0
                            ],
                            [
                                394,
                                0.0
                            ],
                            [
                                404,
                                0.0
                            ],
                            [
                                414,
                                0.0
                            ],
                            [
                                424,
                                0.0
                            ],
                            [
                                434,
                                0.0
                            ],
                            [
                                444,
                                0.0
                            ],
                            [
                                454,
                                0.0
                            ],
                            [
                                464,
                                0.0
                            ],
                            [
                                474,
                                0.0
                            ],
                            [
                                484,
                                0.0
                            ],
                            [
                                494,
                                0.0
                            ],
                            [
                                504,
                                0.0
                            ],
                            [
                                514,
                                0.0
                            ],
                            [
                                524,
                                0.0
                            ],
                            [
                                534,
                                0.0
                            ],
                            [
                                544,
                                0.0
                            ],
                            [
                                554,
                                0.0
                            ],
                            [
                                564,
                                0.003396683122442182
                            ],
                            [
                                574,
                                0.0
                            ],
                            [
                                584,
                                0.0
                            ],
                            [
                                594,
                                0.0
                            ],
                            [
                                601,
                                0.0
                            ]
                        ],
                        "color": "#5cb85c"
                    }
                ]
            ],
            "config": {
                "id": "fastqc_per_base_n_content_plot",
                "title": "FastQC: Per Base N Content",
                "ylab": "Percentage N-Count",
                "xlab": "Position in Read (bp)",
                "yCeiling": 100,
                "yMinRange": 5,
                "ymin": 0,
                "xmin": 0,
                "xDecimals": false,
                "colors": {
                    "SRR6179179": "#5cb85c"
                },
                "tt_label": "<b>Base {point.x}</b>: {point.y:.2f}%",
                "yPlotBands": [
                    {
                        "from": 20,
                        "to": 100,
                        "color": "#e6c3c3"
                    },
                    {
                        "from": 5,
                        "to": 20,
                        "color": "#e6dcc3"
                    },
                    {
                        "from": 0,
                        "to": 5,
                        "color": "#c3e6c3"
                    }
                ]
            }
        },
        "fastqc_sequence_length_distribution_plot": {
            "plot_type": "xy_line",
            "datasets": [
                [
                    {
                        "name": "SRR6179179",
                        "data": [
                            [
                                599,
                                188.0
                            ],
                            [
                                600,
                                196291.0
                            ],
                            [
                                601,
                                68.0
                            ],
                            [
                                602,
                                106690.0
                            ]
                        ],
                        "color": "#f0ad4e"
                    }
                ]
            ],
            "config": {
                "id": "fastqc_sequence_length_distribution_plot",
                "title": "FastQC: Sequence Length Distribution",
                "ylab": "Read Count",
                "xlab": "Sequence Length (bp)",
                "ymin": 0,
                "yMinTickInterval": 0.1,
                "xDecimals": false,
                "colors": {
                    "SRR6179179": "#f0ad4e"
                },
                "tt_label": "<b>{point.x} bp</b>: {point.y}"
            }
        },
        "fastqc_sequence_duplication_levels_plot": {
            "plot_type": "xy_line",
            "datasets": [
                [
                    {
                        "name": "SRR6179179",
                        "data": [
                            2.63853025851067,
                            0.9022645653399817,
                            0.6015097102266543,
                            0.453770483153441,
                            0.3495615640571566,
                            0.34428516309025614,
                            0.2908616033003888,
                            0.2585436473781234,
                            0.20182233698394325,
                            5.486467680395203,
                            2.192014826686717,
                            5.663227112786369,
                            4.766568723473719,
                            16.125670680029152,
                            7.041027315268256,
                            52.68387432931997
                        ],
                        "color": "#d9534f"
                    }
                ]
            ],
            "config": {
                "id": "fastqc_sequence_duplication_levels_plot",
                "title": "FastQC: Sequence Duplication Levels",
                "categories": [
                    1.0,
                    2.0,
                    3.0,
                    4.0,
                    5.0,
                    6.0,
                    7.0,
                    8.0,
                    9.0,
                    ">10",
                    ">50",
                    ">100",
                    ">500",
                    ">1k",
                    ">5k",
                    ">10k+"
                ],
                "ylab": "% of Library",
                "xlab": "Sequence Duplication Level",
                "ymax": 100,
                "ymin": 0,
                "yMinTickInterval": 0.1,
                "yLabelFormat": "{value:.0f}%",
                "colors": {
                    "SRR6179179": "#d9534f"
                },
                "tt_decimals": 2,
                "tt_suffix": "%"
            }
        },
        "fastqc_overrepresented_sequences_plot": {
            "plot_type": "bar_graph",
            "samples": [
                [
                    "SRR6179179"
                ]
            ],
            "datasets": [
                [
                    {
                        "name": "Top over-represented sequence",
                        "data": [
                            12.943671121927732
                        ]
                    },
                    {
                        "name": "Sum of remaining over-represented sequences",
                        "data": [
                            70.43731470763792
                        ]
                    }
                ]
            ],
            "config": {
                "id": "fastqc_overrepresented_sequences_plot",
                "title": "FastQC: Overrepresented sequences",
                "ymin": 0,
                "yCeiling": 100,
                "yMinRange": 20,
                "tt_decimals": 2,
                "tt_suffix": "%",
                "tt_percentages": false,
                "ylab_format": "{value}%",
                "cpswitch": false,
                "ylab": "Percentage of Total Sequences"
            }
        },
        "fastqc_adapter_content_plot": {
            "plot_type": "xy_line",
            "datasets": [
                [
                    {
                        "name": "SRR6179179 - nextera_transposase_sequence",
                        "data": [
                            [
                                1,
                                0.0
                            ],
                            [
                                2,
                                0.0
                            ],
                            [
                                3,
                                0.0
                            ],
                            [
                                4,
                                0.0
                            ],
                            [
                                5,
                                0.0
                            ],
                            [
                                6,
                                0.0
                            ],
                            [
                                7,
                                0.0
                            ],
                            [
                                8,
                                0.0
                            ],
                            [
                                9,
                                0.0
                            ],
                            [
                                14,
                                0.0
                            ],
                            [
                                24,
                                0.0006925276269056876
                            ],
                            [
                                34,
                                0.007090163799272517
                            ],
                            [
                                44,
                                0.00817842149869574
                            ],
                            [
                                54,
                                0.008574151571213275
                            ],
                            [
                                64,
                                0.008640106583299532
                            ],
                            [
                                74,
                                0.009431566728334603
                            ],
                            [
                                84,
                                0.011014487018404746
                            ],
                            [
                                94,
                                0.013784597526027498
                            ],
                            [
                                104,
                                0.014905832731493845
                            ],
                            [
                                114,
                                0.016422798009477733
                            ],
                            [
                                124,
                                0.019555661083574892
                            ],
                            [
                                134,
                                0.027800037594356886
                            ],
                            [
                                144,
                                0.04224418524124694
                            ],
                            [
                                154,
                                0.059491420901802886
                            ],
                            [
                                164,
                                0.08640106583299531
                            ],
                            [
                                174,
                                0.10862790490606358
                            ],
                            [
                                184,
                                0.12920586867697542
                            ],
                            [
                                194,
                                0.15199332535277688
                            ],
                            [
                                204,
                                0.17695729742742478
                            ],
                            [
                                214,
                                0.20584559272120484
                            ],
                            [
                                224,
                                0.237833773583039
                            ],
                            [
                                234,
                                0.2585766248841665
                            ],
                            [
                                244,
                                0.28086941896932094
                            ],
                            [
                                254,
                                0.2972592394727556
                            ],
                            [
                                264,
                                0.32842298268351156
                            ],
                            [
                                274,
                                0.37838390433885044
                            ],
                            [
                                284,
                                0.6648924768415464
                            ],
                            [
                                294,
                                0.7732895392053082
                            ],
                            [
                                304,
                                0.7733225167113512
                            ],
                            [
                                314,
                                0.7733225167113512
                            ],
                            [
                                324,
                                0.7733225167113512
                            ],
                            [
                                334,
                                0.7733225167113512
                            ],
                            [
                                344,
                                0.7733225167113512
                            ],
                            [
                                354,
                                0.7733225167113512
                            ],
                            [
                                364,
                                0.7733225167113512
                            ],
                            [
                                374,
                                0.7733225167113512
                            ],
                            [
                                384,
                                0.7733225167113512
                            ],
                            [
                                394,
                                0.773553359253653
                            ],
                            [
                                404,
                                0.7736522917717824
                            ],
                            [
                                414,
                                0.773784201795955
                            ],
                            [
                                424,
                                0.774278864386602
                            ],
                            [
                                434,
                                0.7745756619409899
                            ],
                            [
                                444,
                                0.7755320096162408
                            ],
                            [
                                454,
                                0.7766532448217072
                            ],
                            [
                                464,
                                0.7788627377265969
                            ],
                            [
                                474,
                                0.7807094780650119
                            ],
                            [
                                484,
                                0.7815668932221332
                            ],
                            [
                                494,
                                0.7827211059336425
                            ],
                            [
                                504,
                                0.784040206175368
                            ],
                            [
                                514,
                                0.7846338012841441
                            ],
                            [
                                524,
                                0.7857550364896105
                            ],
                            [
                                534,
                                0.786942226707163
                            ],
                            [
                                544,
                                0.7878326193703274
                            ],
                            [
                                554,
                                0.7878326193703274
                            ],
                            [
                                564,
                                0.7886570570214056
                            ],
                            [
                                574,
                                0.790536774865864
                            ],
                            [
                                584,
                                0.8081467630928942
                            ],
                            [
                                590,
                                0.8125657489026735
                            ]
                        ]
                    },
                    {
                        "name": "SRR6179179 - polya",
                        "data": [
                            [
                                1,
                                0.0
                            ],
                            [
                                2,
                                0.0
                            ],
                            [
                                3,
                                0.0
                            ],
                            [
                                4,
                                0.0
                            ],
                            [
                                5,
                                0.0
                            ],
                            [
                                6,
                                0.0
                            ],
                            [
                                7,
                                0.0
                            ],
                            [
                                8,
                                0.0
                            ],
                            [
                                9,
                                0.0
                            ],
                            [
                                14,
                                0.0
                            ],
                            [
                                24,
                                0.0
                            ],
                            [
                                34,
                                0.0
                            ],
                            [
                                44,
                                0.0
                            ],
                            [
                                54,
                                0.0
                            ],
                            [
                                64,
                                0.00019786503625876788
                            ],
                            [
                                74,
                                0.0008244376510781994
                            ],
                            [
                                84,
                                0.0042870757856066375
                            ],
                            [
                                94,
                                0.005935951087763036
                            ],
                            [
                                104,
                                0.008903926631644556
                            ],
                            [
                                114,
                                0.010486846921714697
                            ],
                            [
                                124,
                                0.011542127115094794
                            ],
                            [
                                134,
                                0.01173999215135356
                            ],
                            [
                                144,
                                0.012201677235957355
                            ],
                            [
                                154,
                                0.013883530044156881
                            ],
                            [
                                164,
                                0.015796225394658307
                            ],
                            [
                                174,
                                0.016356842997391482
                            ],
                            [
                                184,
                                0.017873808275375366
                            ],
                            [
                                194,
                                0.021468356434076317
                            ],
                            [
                                204,
                                0.028327677691046944
                            ],
                            [
                                214,
                                0.03436256129693936
                            ],
                            [
                                224,
                                0.0437281730131877
                            ],
                            [
                                234,
                                0.055534120176627524
                            ],
                            [
                                244,
                                0.06407529424179768
                            ],
                            [
                                254,
                                0.07383663603056353
                            ],
                            [
                                264,
                                0.08725848099011664
                            ],
                            [
                                274,
                                0.0955688125129849
                            ],
                            [
                                284,
                                0.11298093570375647
                            ],
                            [
                                294,
                                0.11964239192446831
                            ],
                            [
                                304,
                                0.11970834693655455
                            ],
                            [
                                314,
                                0.11970834693655455
                            ],
                            [
                                324,
                                0.11970834693655455
                            ],
                            [
                                334,
                                0.1203678970574171
                            ],
                            [
                                344,
                                0.12135722223871095
                            ],
                            [
                                354,
                                0.12135722223871095
                            ],
                            [
                                364,
                                0.12135722223871095
                            ],
                            [
                                374,
                                0.12135722223871095
                            ],
                            [
                                384,
                                0.12135722223871095
                            ],
                            [
                                394,
                                0.12158806478101285
                            ],
                            [
                                404,
                                0.12267632248043611
                            ],
                            [
                                414,
                                0.12323694008316928
                            ],
                            [
                                424,
                                0.12333587260129866
                            ],
                            [
                                434,
                                0.12333587260129866
                            ],
                            [
                                444,
                                0.12333587260129866
                            ],
                            [
                                454,
                                0.12333587260129866
                            ],
                            [
                                464,
                                0.12359969264964368
                            ],
                            [
                                474,
                                0.12366564766172994
                            ],
                            [
                                484,
                                0.12366564766172994
                            ],
                            [
                                494,
                                0.12396244521611807
                            ],
                            [
                                504,
                                0.12406137773424748
                            ],
                            [
                                514,
                                0.12472092785511005
                            ],
                            [
                                524,
                                0.1252815454578432
                            ],
                            [
                                534,
                                0.12590811807266267
                            ],
                            [
                                544,
                                0.12640278066330954
                            ],
                            [
                                554,
                                0.12706233078417212
                            ],
                            [
                                564,
                                0.12762294838690533
                            ],
                            [
                                574,
                                0.12815058848359534
                            ],
                            [
                                584,
                                0.12897502613467357
                            ],
                            [
                                590,
                                0.1292718236890617
                            ]
                        ]
                    }
                ]
            ],
            "config": {
                "id": "fastqc_adapter_content_plot",
                "title": "FastQC: Adapter Content",
                "ylab": "% of Sequences",
                "xlab": "Position (bp)",
                "yCeiling": 100,
                "yMinRange": 5,
                "ymin": 0,
                "xDecimals": false,
                "tt_label": "<b>Base {point.x}</b>: {point.y:.2f}%",
                "hide_empty": true,
                "yPlotBands": [
                    {
                        "from": 20,
                        "to": 100,
                        "color": "#e6c3c3"
                    },
                    {
                        "from": 5,
                        "to": 20,
                        "color": "#e6dcc3"
                    },
                    {
                        "from": 0,
                        "to": 5,
                        "color": "#c3e6c3"
                    }
                ]
            }
        },
        "fastqc-status-check-heatmap": {
            "plot_type": "heatmap",
            "data": [
                [
                    0,
                    0,
                    1
                ],
                [
                    1,
                    0,
                    0.25
                ],
                [
                    2,
                    0,
                    1
                ],
                [
                    3,
                    0,
                    1
                ],
                [
                    4,
                    0,
                    0.25
                ],
                [
                    5,
                    0,
                    0.25
                ],
                [
                    6,
                    0,
                    1
                ],
                [
                    7,
                    0,
                    0.5
                ],
                [
                    8,
                    0,
                    0.25
                ],
                [
                    9,
                    0,
                    0.25
                ],
                [
                    10,
                    0,
                    1
                ]
            ],
            "xcats": [
                "Basic Statistics",
                "Per Base Sequence Quality",
                "Per Tile Sequence Quality",
                "Per Sequence Quality Scores",
                "Per Base Sequence Content",
                "Per Sequence GC Content",
                "Per Base N Content",
                "Sequence Length Distribution",
                "Sequence Duplication Levels",
                "Overrepresented Sequences",
                "Adapter Content"
            ],
            "ycats": [
                "SRR6179179"
            ],
            "config": {
                "id": "fastqc-status-check-heatmap",
                "title": "FastQC: Status Checks",
                "xTitle": "Section Name",
                "yTitle": "Sample",
                "min": 0,
                "max": 1,
                "square": false,
                "colstops": [
                    [
                        0,
                        "#ffffff"
                    ],
                    [
                        0.25,
                        "#d9534f"
                    ],
                    [
                        0.5,
                        "#fee391"
                    ],
                    [
                        1,
                        "#5cb85c"
                    ]
                ],
                "decimalPlaces": 1,
                "legend": false,
                "datalabels": false,
                "xcats_samples": false
            }
        }
    },
    "report_saved_raw_data": {
        "multiqc_fastqc": {
            "SRR6179179": {
                "Filename": "SRR6179179",
                "File type": "Conventional base calls",
                "Encoding": "Sanger / Illumina 1.9",
                "Total Sequences": 303237.0,
                "Total Bases": "182.1 Mbp",
                "Sequences flagged as poor quality": 0.0,
                "Sequence length": "599-602",
                "%GC": 52.0,
                "total_deduplicated_percentage": 3.9668642019278653,
                "avg_sequence_length": 600.7032782938758,
                "median_sequence_length": 600,
                "basic_statistics": "pass",
                "per_base_sequence_quality": "fail",
                "per_tile_sequence_quality": "pass",
                "per_sequence_quality_scores": "pass",
                "per_base_sequence_content": "fail",
                "per_sequence_gc_content": "fail",
                "per_base_n_content": "pass",
                "sequence_length_distribution": "warn",
                "sequence_duplication_levels": "fail",
                "overrepresented_sequences": "fail",
                "adapter_content": "pass"
            }
        },
        "multiqc_general_stats": {
            "SRR6179179": {
                "FastQC_mqc-generalstats-fastqc-percent_duplicates": 96.03313579807214,
                "FastQC_mqc-generalstats-fastqc-percent_gc": 52.0,
                "FastQC_mqc-generalstats-fastqc-avg_sequence_length": 600.7032782938758,
                "FastQC_mqc-generalstats-fastqc-median_sequence_length": 600,
                "FastQC_mqc-generalstats-fastqc-percent_fails": 45.45454545454545,
                "FastQC_mqc-generalstats-fastqc-total_sequences": 303237.0
            }
        }
    },
    "config_analysis_dir_abs": [
        "/home/baumlerc/dissertation-project/seqs/qc/fastqc/PRJNA414360/SRR6179179_fastqc.zip"
    ],
    "config_analysis_dir": [
        "qc/fastqc/PRJNA414360/SRR6179179_fastqc.zip"
    ],
    "config_creation_date": "2023-09-14, 14:26 PDT",
    "config_git_hash": null,
    "config_intro_text": null,
    "config_report_comment": null,
    "config_report_header_info": null,
    "config_script_path": "/home/baumlerc/miniconda3/e535cf4f6134cf51c3e2bd2adb07af7f_/lib/python3.11/site-packages/multiqc/utils",
    "config_short_version": "1.15",
    "config_subtitle": null,
    "config_title": null,
    "config_version": "1.15"
}
