SUMMARISING RUN PARAMETERS
==========================
Input filename: Raw_Reads/H3K4me3_TwoCell.fq.gz
Trimming mode: single-end
Trim Galore version: 0.4.1
Cutadapt version: 1.10
Quality Phred score cutoff: 20
Quality encoding type selected: ASCII+33
Adapter sequence: 'AGATCGGAAGAGC' (Illumina TruSeq, Sanger iPCR; auto-detected)
Maximum trimming error rate: 0.1 (default)
Minimum required adapter overlap (stringency): 1 bp
Minimum required sequence length before a sequence gets removed: 20 bp
Output file will be GZIP compressed


This is cutadapt 1.10 with Python 2.7.12
Command line parameters: -f fastq -e 0.1 -q 20 -O 1 -a AGATCGGAAGAGC Raw_Reads/H3K4me3_TwoCell.fq.gz
Trimming 1 adapter with at most 10.0% errors in single-end mode ...
cutadapt: error: Line 3 in FASTQ file is expected to start with '+', but found ';'

gzip: stdout: Broken pipe