Tissue Rep Raw Reads Trimmed Reads Aligned Reads Filtered Reads bESC B 24,206,115 24,203,363 (100.0%) 21,528,791 ( 88.9%) 9,123,326 ( 42.4%) BL 29,266,201 29,262,102 (100.0%) 17,206,058 ( 58.8%) 9,728,765 ( 56.5%) Fib10K 20,697,494 20,663,119 ( 99.8%) 17,488,830 ( 84.6%) 11,957,368 ( 68.4%) TwoCell 28,522,205 28,518,352 (100.0%) 18,835,650 ( 66.0%) 10,996,649 ( 58.4%)