Tissue Rep Raw Reads Trimmed Reads Aligned Reads Filtered Reads bESC A 37,497,794 37,447,939 ( 99.9%) 25,942,003 ( 69.3%) 20,641,083 ( 79.6%) BL 25,531,617 25,525,396 (100.0%) 12,083,865 ( 47.3%) 8,726,309 ( 72.2%) Fib10K 17,055,886 16,992,449 ( 99.6%) 10,791,498 ( 63.5%) 8,549,284 ( 79.2%)