Information for 20-AAAAAACCGA (Motif 17)

C T G A G T C A T G C A C T G A T G C A C G T A A G T C A T G C C T A G C G T A
Reverse Opposite:
G A C T G A T C A T C G T C A G C G A T A C G T A G C T A C G T A C G T G A C T
p-value:1e-14
log p-value:-3.255e+01
Information Content per bp:1.809
Number of Target Sequences with motif35.0
Percentage of Target Sequences with motif0.53%
Number of Background Sequences with motif42.5
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets107.7 +/- 56.1bp
Average Position of motif in Background91.1 +/- 62.9bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TIAR-1(RRM)/Caenorhabditis_elegans-RNCMPT00256-PBM/HughesRNA

Match Rank:1
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:AAAAAACCGA
AAAAAAN---
 C T G A G T C A T G C A C T G A T G C A C G T A A G T C A T G C C T A G C G T A
T G C A C G T A C G T A C G T A C G T A C G T A C T A G A C G T A C G T A C G T

RALY(RRM)/Homo_sapiens-RNCMPT00159-PBM/HughesRNA

Match Rank:2
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-AAAAAACCGA
CAAAAAA----
 A C G T C T G A G T C A T G C A C T G A T G C A C G T A A G T C A T G C C T A G C G T A
T G A C T G C A C G T A C G T A C G T A C G T A C G T A A C G T A C G T A C G T A C G T

CPEB4(RRM)/Homo_sapiens-RNCMPT00158-PBM/HughesRNA

Match Rank:3
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:AAAAAACCGA
AAAAAAG---
 C T G A G T C A T G C A C T G A T G C A C G T A A G T C A T G C C T A G C G T A
C G T A G T C A C G T A C G T A C G T A C G T A C T A G A C G T A C G T A C G T

hb/dmmpmm(SeSiMCMC)/fly

Match Rank:4
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:AAAAAACCGA
AAAAAA----
 C T G A G T C A T G C A C T G A T G C A C G T A A G T C A T G C C T A G C G T A
G C T A C G T A C G T A C T G A T C G A T C G A A C G T A C G T A C G T A C G T

PFI1435w(RRM)/Plasmodium_falciparum-RNCMPT00202-PBM/HughesRNA

Match Rank:5
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-AAAAAACCGA
CAAAAAA----
 A C G T C T G A G T C A T G C A C T G A T G C A C G T A A G T C A T G C C T A G C G T A
G T A C G T C A G T C A C G T A G T C A G T C A C G T A A C G T A C G T A C G T A C G T

TIA1(RRM)/Homo_sapiens-RNCMPT00165-PBM/HughesRNA

Match Rank:6
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-AAAAAACCGA
GAAAAAA----
 A C G T C T G A G T C A T G C A C T G A T G C A C G T A A G T C A T G C C T A G C G T A
T C A G G T C A C G T A C G T A C G T A C G T A C G T A A C G T A C G T A C G T A C G T

PABPC3(RRM)/Homo_sapiens-RNCMPT00153-PBM/HughesRNA

Match Rank:7
Score:0.74
Offset:1
Orientation:forward strand
Alignment:AAAAAACCGA
-GAAAACC--
 C T G A G T C A T G C A C T G A T G C A C G T A A G T C A T G C C T A G C G T A
A C G T C T A G C G T A C G T A C G T A C G T A G T A C G T A C A C G T A C G T

Ot_0262(RRM)/Ostreococcus_tauri-RNCMPT00262-PBM/HughesRNA

Match Rank:8
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-AAAAAACCGA
AAAAAAA----
 A C G T C T G A G T C A T G C A C T G A T G C A C G T A A G T C A T G C C T A G C G T A
T G C A T C G A G T C A C G T A C G T A G T C A T G C A A C G T A C G T A C G T A C G T

U2AF50(RRM)/Drosophila_melanogaster-RNCMPT00080-PBM/HughesRNA

Match Rank:9
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-AAAAAACCGA
GAAAAAA----
 A C G T C T G A G T C A T G C A C T G A T G C A C G T A A G T C A T G C C T A G C G T A
C T A G C T G A C T G A C G T A C G T A C G T A C T G A A C G T A C G T A C G T A C G T

hb/dmmpmm(Pollard)/fly

Match Rank:10
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--AAAAAACCGA
ATAAAAAA----
 A C G T A C G T C T G A G T C A T G C A C T G A T G C A C G T A A G T C A T G C C T A G C G T A
C G T A G A C T C T G A C G T A C T G A C T G A G T C A C G T A A C G T A C G T A C G T A C G T