Information for 6-BCGRTWDN (Motif 4)

A G C T A G T C A C T G C T G A G C A T C G T A C A G T C G A T
Reverse Opposite:
G C T A G T C A C G A T C G T A G A C T A G T C A C T G T C G A
p-value:1e-168
log p-value:-3.888e+02
Information Content per bp:1.567
Number of Target Sequences with motif10205.0
Percentage of Target Sequences with motif53.25%
Number of Background Sequences with motif13070.0
Percentage of Background Sequences with motif43.26%
Average Position of motif in Targets99.3 +/- 56.9bp
Average Position of motif in Background99.7 +/- 63.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.63
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

AT2G15740(C2H2)/col-AT2G15740-DAP-Seq(GSE60143)/Homer

Match Rank:1
Score:0.84
Offset:-2
Orientation:reverse strand
Alignment:--BCGRTWDN--
HATCGATWHNDH
 A C G T A C G T A G C T A G T C A C T G C T G A G C A T C G T A C A G T C G A T A C G T A C G T
G C T A C G T A G C A T A G T C C T A G C G T A G C A T C G A T G A C T A T G C C T A G G C T A

PF10_0214(RRM)/Plasmodium_falciparum-RNCMPT00240-PBM/HughesRNA

Match Rank:2
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:BCGRTWDN
TCGGAAT-
 A G C T A G T C A C T G C T G A G C A T C G T A C A G T C G A T
A C G T A G T C A C T G A C T G C G T A C G T A C G A T A C G T

Dref/dmmpmm(Pollard)/fly

Match Rank:3
Score:0.75
Offset:-3
Orientation:forward strand
Alignment:---BCGRTWDN-
TTATCGATAAAA
 A C G T A C G T A C G T A G C T A G T C A C T G C T G A G C A T C G T A C A G T C G A T A C G T
A G C T A C G T C G T A A C G T A G T C A C T G C G T A A C G T C G T A C G A T A C G T G C T A

pnr/MA0536.1/Jaspar

Match Rank:4
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--BCGRTWDN-
TATCGATAGTT
 A C G T A C G T A G C T A G T C A C T G C T G A G C A T C G T A C A G T C G A T A C G T
G A C T C G T A A G C T A G T C A C T G C G T A A C G T C G T A C A T G A G C T A G C T

DREF/Drosophila-Promoters/Homer

Match Rank:5
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---BCGRTWDN-
HTATCGATARBT
 A C G T A C G T A C G T A G C T A G T C A C T G C T G A G C A T C G T A C A G T C G A T A C G T
G A T C G C A T C T G A C A G T A G T C C A T G T G C A G C A T C G T A C T A G A G C T G C A T

BEAF-32/MA0529.1/Jaspar

Match Rank:6
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--BCGRTWDN-----
TATCGATAGTTTNNN
 A C G T A C G T A G C T A G T C A C T G C T G A G C A T C G T A C A G T C G A T A C G T A C G T A C G T A C G T A C G T
G C A T C G T A A G C T A G T C A C T G C G T A A G C T C G T A A C T G G A C T G C A T A C G T A G T C A C T G T G C A

HAP1(MacIsaac)/Yeast

Match Rank:7
Score:0.72
Offset:1
Orientation:forward strand
Alignment:BCGRTWDN---
-CGATAACNCC
 A G C T A G T C A C T G C T G A G C A T C G T A C A G T C G A T A C G T A C G T A C G T
A C G T A T G C C T A G C T G A G C A T T C G A C G T A A G T C A G C T A T G C T A G C

Unknown3/Arabidopsis-Promoters/Homer

Match Rank:8
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:BCGRTWDN--
CCGGTTTART
 A G C T A G T C A C T G C T G A G C A T C G T A C A G T C G A T A C G T A C G T
G A T C A T G C A T C G C A T G A C G T G A C T G A C T C T G A C T G A G C A T

BEAF-32B/dmmpmm(Pollard)/fly

Match Rank:9
Score:0.70
Offset:0
Orientation:forward strand
Alignment:BCGRTWDN
ACGATACT
 A G C T A G T C A C T G C T G A G C A T C G T A C A G T C G A T
C T A G A G T C A C T G C G T A A C G T C G T A A G C T A C G T

ASG1/MA0275.1/Jaspar

Match Rank:10
Score:0.69
Offset:0
Orientation:forward strand
Alignment:BCGRTWDN
CCGGAA--
 A G C T A G T C A C T G C T G A G C A T C G T A C A G T C G A T
A G T C A G T C A C T G A C T G T C G A C G T A A C G T A C G T