Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 19165)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 30227)	% of Background Sequences with Motif
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-6317	-1.455e+04	0.0000	6200.0	32.35%	426.2	1.41%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-4532	-1.044e+04	0.0000	6330.0	33.03%	906.7	3.00%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-143	-3.310e+02	0.0000	3223.0	16.82%	3230.0	10.69%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-107	-2.478e+02	0.0000	6453.0	33.67%	7991.9	26.45%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-101	-2.334e+02	0.0000	2303.0	12.02%	2295.8	7.60%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-100	-2.306e+02	0.0000	4045.0	21.11%	4625.1	15.31%
SeqBias: CG bias	SSSSSSSSSS	1e-75	-1.731e+02	0.0000	15804.0	82.46%	23274.8	77.04%
E2FA(E2FDP)/colamp-E2FA-DAP-Seq(GSE60143)/Homer	WWTGGCGCCAWWWNN	1e-56	-1.301e+02	0.0000	947.0	4.94%	857.7	2.84%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-56	-1.293e+02	0.0000	6545.0	34.15%	8723.7	28.88%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-49	-1.143e+02	0.0000	1910.0	9.97%	2131.1	7.05%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-41	-9.492e+01	0.0000	419.0	2.19%	316.8	1.05%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-39	-9.159e+01	0.0000	2480.0	12.94%	3006.7	9.95%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-38	-8.843e+01	0.0000	130.0	0.68%	51.0	0.17%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-37	-8.709e+01	0.0000	1202.0	6.27%	1286.2	4.26%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-36	-8.301e+01	0.0000	2583.0	13.48%	3193.2	10.57%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-33	-7.818e+01	0.0000	610.0	3.18%	564.9	1.87%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-32	-7.489e+01	0.0000	4191.0	21.87%	5571.3	18.44%
SeqBias: A/T bias	WWWWWWWWWW	1e-31	-7.334e+01	0.0000	12002.0	62.62%	17653.7	58.44%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-31	-7.224e+01	0.0000	1016.0	5.30%	1091.6	3.61%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-30	-7.042e+01	0.0000	1096.0	5.72%	1202.2	3.98%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-29	-6.876e+01	0.0000	1215.0	6.34%	1366.4	4.52%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-29	-6.860e+01	0.0000	606.0	3.16%	581.6	1.93%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-29	-6.707e+01	0.0000	147.0	0.77%	77.4	0.26%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-28	-6.645e+01	0.0000	1387.0	7.24%	1607.5	5.32%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-28	-6.573e+01	0.0000	1205.0	6.29%	1364.6	4.52%
SeqBias: polyA-repeat	AAAAAAAAAA	1e-28	-6.469e+01	0.0000	16807.0	87.70%	25650.3	84.91%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-27	-6.389e+01	0.0000	637.0	3.32%	631.5	2.09%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-26	-6.129e+01	0.0000	6196.0	32.33%	8690.6	28.77%
SeqBias: polyC-repeat	CCCCCCCCCC	1e-26	-6.067e+01	0.0000	19076.0	99.54%	29845.8	98.79%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-23	-5.515e+01	0.0000	184.0	0.96%	123.4	0.41%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-23	-5.468e+01	0.0000	3164.0	16.51%	4202.8	13.91%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-23	-5.457e+01	0.0000	1648.0	8.60%	2022.6	6.70%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-23	-5.395e+01	0.0000	1994.0	10.40%	2514.7	8.32%
AT2G15740(C2H2)/col-AT2G15740-DAP-Seq(GSE60143)/Homer	DHNDWATCGATD	1e-23	-5.362e+01	0.0000	1169.0	6.10%	1364.4	4.52%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-23	-5.322e+01	0.0000	1428.0	7.45%	1722.7	5.70%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-22	-5.234e+01	0.0000	1582.0	8.25%	1941.9	6.43%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-21	-5.035e+01	0.0000	2073.0	10.82%	2648.9	8.77%
At1g75490(AP2EREBP)/colamp-At1g75490-DAP-Seq(GSE60143)/Homer	CACCGMCT	1e-20	-4.819e+01	0.0000	5285.0	27.58%	7427.8	24.59%
DEL2(E2FDP)/col-DEL2-DAP-Seq(GSE60143)/Homer	WTTTCSCGCC	1e-20	-4.764e+01	0.0000	936.0	4.88%	1073.2	3.55%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-20	-4.668e+01	0.0000	442.0	2.31%	433.3	1.43%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e-20	-4.606e+01	0.0000	13802.0	72.02%	20829.9	68.95%
DREB19(AP2EREBP)/colamp-DREB19-DAP-Seq(GSE60143)/Homer	AATGTCGGTK	1e-19	-4.581e+01	0.0000	1299.0	6.78%	1580.0	5.23%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-19	-4.560e+01	0.0000	898.0	4.69%	1030.0	3.41%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-18	-4.304e+01	0.0000	1718.0	8.96%	2185.9	7.24%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-18	-4.151e+01	0.0000	3975.0	20.74%	5514.3	18.25%
NAP(NAC)/col-NAP-DAP-Seq(GSE60143)/Homer	ARGTTACGTRTN	1e-17	-4.140e+01	0.0000	1498.0	7.82%	1882.3	6.23%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-17	-4.011e+01	0.0000	10976.0	57.27%	16367.7	54.18%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-17	-3.978e+01	0.0000	2668.0	13.92%	3586.9	11.87%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-17	-3.960e+01	0.0000	1425.0	7.44%	1789.6	5.92%
At5g18450(AP2EREBP)/col-At5g18450-DAP-Seq(GSE60143)/Homer	CACCGCTT	1e-17	-3.951e+01	0.0000	6162.0	32.15%	8857.7	29.32%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-17	-3.918e+01	0.0000	960.0	5.01%	1142.7	3.78%
bZIP18(bZIP)/colamp-bZIP18-DAP-Seq(GSE60143)/Homer	KGMCAGCTND	1e-16	-3.831e+01	0.0000	10354.0	54.03%	15405.3	50.99%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-16	-3.780e+01	0.0000	170.0	0.89%	131.7	0.44%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-15	-3.562e+01	0.0000	594.0	3.10%	662.9	2.19%
At3g60580(C2H2)/col-At3g60580-DAP-Seq(GSE60143)/Homer	WTTYTACT	1e-14	-3.320e+01	0.0000	8041.0	41.96%	11843.2	39.20%
RRTF1(AP2EREBP)/colamp-RRTF1-DAP-Seq(GSE60143)/Homer	CCGCCGCHATTT	1e-14	-3.261e+01	0.0000	893.0	4.66%	1081.3	3.58%
ABR1(AP2EREBP)/colamp-ABR1-DAP-Seq(GSE60143)/Homer	AAATGGCGGCGG	1e-13	-3.112e+01	0.0000	3791.0	19.78%	5341.8	17.68%
Tal1	CATCTG	1e-13	-3.090e+01	0.0000	2586.0	13.49%	3540.4	11.72%
TGA5(bZIP)/col-TGA5-DAP-Seq(GSE60143)/Homer	NNGATGACGTCATCN	1e-13	-3.014e+01	0.0000	174.0	0.91%	148.5	0.49%
AT3G10030(Trihelix)/colamp-AT3G10030-DAP-Seq(GSE60143)/Homer	GCCGTTAA	1e-12	-2.936e+01	0.0000	1301.0	6.79%	1675.2	5.55%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e-12	-2.905e+01	0.0000	274.0	1.43%	270.7	0.90%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-12	-2.900e+01	0.0000	1494.0	7.80%	1955.1	6.47%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-12	-2.891e+01	0.0000	3031.0	15.82%	4222.9	13.98%
RAP211(AP2EREBP)/colamp-RAP211-DAP-Seq(GSE60143)/Homer	RGCCGGCYWW	1e-12	-2.843e+01	0.0000	6461.0	33.71%	9456.8	31.30%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-12	-2.794e+01	0.0000	2028.0	10.58%	2742.1	9.08%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-12	-2.790e+01	0.0000	1251.0	6.53%	1613.4	5.34%
dHNF4(NR)/Fly-HNF4-ChIP-Seq(GSE73675)/Homer	GGTCCAAAGTCCAMT	1e-12	-2.788e+01	0.0000	71.0	0.37%	42.1	0.14%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-12	-2.781e+01	0.0000	2401.0	12.53%	3294.1	10.90%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e-11	-2.763e+01	0.0000	572.0	2.98%	664.5	2.20%
bZIP50(bZIP)/colamp-bZIP50-DAP-Seq(GSE60143)/Homer	GATGACGTCA	1e-11	-2.750e+01	0.0000	1519.0	7.93%	2002.7	6.63%
NAM(NAC)/col-NAM-DAP-Seq(GSE60143)/Homer	RGTTRCGTRW	1e-11	-2.711e+01	0.0000	2215.0	11.56%	3025.7	10.02%
ANAC047(NAC)/colamp-ANAC047-DAP-Seq(GSE60143)/Homer	WACACGTAACTT	1e-11	-2.621e+01	0.0000	1151.0	6.01%	1481.3	4.90%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-11	-2.597e+01	0.0000	3343.0	17.44%	4722.7	15.63%
ERF7(AP2EREBP)/col-ERF7-DAP-Seq(GSE60143)/Homer	ATGRCGGCGG	1e-11	-2.588e+01	0.0000	4871.0	25.42%	7045.8	23.32%
ATAF1(NAC)/col-ATAF1-DAP-Seq(GSE60143)/Homer	YACGTMAY	1e-11	-2.586e+01	0.0000	5373.0	28.04%	7815.6	25.87%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-11	-2.575e+01	0.0000	1372.0	7.16%	1802.6	5.97%
NLP7(RWPRK)/col-NLP7-DAP-Seq(GSE60143)/Homer	TGRCCYTTCR	1e-11	-2.570e+01	0.0000	2904.0	15.15%	4065.5	13.46%
AT1G71450(AP2EREBP)/col-AT1G71450-DAP-Seq(GSE60143)/Homer	DHDWTGTCGGTG	1e-11	-2.550e+01	0.0000	4475.0	23.35%	6445.8	21.34%
AT5G05550(Trihelix)/col-AT5G05550-DAP-Seq(GSE60143)/Homer	HDNHDTCKCCGGMGA	1e-11	-2.538e+01	0.0000	3481.0	18.16%	4937.2	16.34%
TGA3(bZIP)/colamp-TGA3-DAP-Seq(GSE60143)/Homer	WTGATGACGTCATCW	1e-10	-2.520e+01	0.0000	123.0	0.64%	99.4	0.33%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-10	-2.520e+01	0.0000	2473.0	12.90%	3427.0	11.34%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-10	-2.516e+01	0.0000	531.0	2.77%	619.6	2.05%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-10	-2.498e+01	0.0000	509.0	2.66%	590.3	1.95%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-10	-2.486e+01	0.0000	229.0	1.19%	225.3	0.75%
ERF115(AP2EREBP)/colamp-ERF115-DAP-Seq(GSE60143)/Homer	WTKRCGGCGB	1e-10	-2.463e+01	0.0000	6048.0	31.56%	8872.4	29.37%
DREB2(AP2EREBP)/col-DREB2-DAP-Seq(GSE60143)/Homer	TMACCGACATWA	1e-10	-2.434e+01	0.0000	884.0	4.61%	1113.7	3.69%
TGA10(bZIP)/colamp-TGA10-DAP-Seq(GSE60143)/Homer	ATGACGTC	1e-10	-2.431e+01	0.0000	886.0	4.62%	1116.7	3.70%
AT1G28160(AP2EREBP)/colamp-AT1G28160-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e-10	-2.427e+01	0.0000	7217.0	37.66%	10689.8	35.38%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e-10	-2.403e+01	0.0000	360.0	1.88%	395.5	1.31%
ERF13(AP2EREBP)/colamp-ERF13-DAP-Seq(GSE60143)/Homer	TYAGCCGCCATT	1e-10	-2.400e+01	0.0000	4360.0	22.75%	6289.3	20.82%
At2g33710(AP2EREBP)/colamp-At2g33710-DAP-Seq(GSE60143)/Homer	WTKGCGGCKR	1e-10	-2.364e+01	0.0000	6294.0	32.84%	9267.7	30.68%
LBD18(LOBAS2)/colamp-LBD18-DAP-Seq(GSE60143)/Homer	CKGAWWTTCHGS	1e-10	-2.358e+01	0.0000	4157.0	21.69%	5985.2	19.81%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-10	-2.355e+01	0.0000	2210.0	11.53%	3051.8	10.10%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-10	-2.338e+01	0.0000	664.0	3.46%	810.4	2.68%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-10	-2.335e+01	0.0000	6714.0	35.03%	9922.1	32.84%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-10	-2.334e+01	0.0000	1873.0	9.77%	2554.9	8.46%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-10	-2.328e+01	0.0000	3735.0	19.49%	5347.6	17.70%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-10	-2.315e+01	0.0000	1215.0	6.34%	1594.9	5.28%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-9	-2.286e+01	0.0000	600.0	3.13%	724.4	2.40%
ERF105(AP2EREBP)/colamp-ERF105-DAP-Seq(GSE60143)/Homer	TGGCGGCT	1e-9	-2.249e+01	0.0000	5914.0	30.86%	8697.4	28.79%
MYB101(MYB)/colamp-MYB101-DAP-Seq(GSE60143)/Homer	TAACNRMY	1e-9	-2.240e+01	0.0000	3944.0	20.58%	5676.9	18.79%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-9	-2.238e+01	0.0000	3294.0	17.19%	4690.0	15.52%
ERF4(AP2EREBP)/colamp-ERF4-DAP-Seq(GSE60143)/Homer	WDWTGGCGGCGG	1e-9	-2.234e+01	0.0000	4278.0	22.32%	6186.6	20.48%
AT1G12630(AP2EREBP)/colamp-AT1G12630-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e-9	-2.196e+01	0.0000	1121.0	5.85%	1467.2	4.86%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e-9	-2.194e+01	0.0000	2865.0	14.95%	4048.2	13.40%
LBD23(LOBAS2)/colamp-LBD23-DAP-Seq(GSE60143)/Homer	GCGNAWWWTNCGCYW	1e-9	-2.183e+01	0.0000	3040.0	15.86%	4313.3	14.28%
ERF11(AP2EREBP)/col-ERF11-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e-9	-2.173e+01	0.0000	4034.0	21.05%	5822.4	19.27%
ERF9(AP2EREBP)/colamp-ERF9-DAP-Seq(GSE60143)/Homer	AWATGGCGGCGG	1e-9	-2.162e+01	0.0000	1800.0	9.39%	2462.8	8.15%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-9	-2.158e+01	0.0000	3152.0	16.45%	4485.3	14.85%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-9	-2.152e+01	0.0000	161.0	0.84%	150.1	0.50%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-9	-2.146e+01	0.0000	209.0	1.09%	209.4	0.69%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-9	-2.130e+01	0.0000	1162.0	6.06%	1531.3	5.07%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e-9	-2.127e+01	0.0000	2687.0	14.02%	3788.1	12.54%
ERF10(AP2EREBP)/col-ERF10-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e-9	-2.118e+01	0.0000	3467.0	18.09%	4967.4	16.44%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-9	-2.114e+01	0.0000	1734.0	9.05%	2369.8	7.84%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-9	-2.094e+01	0.0000	970.0	5.06%	1257.8	4.16%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-8	-2.046e+01	0.0000	6334.0	33.05%	9379.9	31.05%
At5g08750(C3H)/col-At5g08750-DAP-Seq(GSE60143)/Homer	NWDTTGCGGCTR	1e-8	-2.032e+01	0.0000	1006.0	5.25%	1313.7	4.35%
AZF1(C2H2)/colamp-AZF1-DAP-Seq(GSE60143)/Homer	DKSWCACT	1e-8	-2.020e+01	0.0000	8353.0	43.58%	12529.5	41.47%
ERF8(AP2EREBP)/colamp-ERF8-DAP-Seq(GSE60143)/Homer	CGCCGYCATW	1e-8	-2.006e+01	0.0000	4191.0	21.87%	6085.2	20.14%
CRF10(AP2EREBP)/col100-CRF10-DAP-Seq(GSE60143)/Homer	DCCGCCGYHA	1e-8	-1.964e+01	0.0000	6140.0	32.04%	9092.9	30.10%
AT4G18450(AP2EREBP)/col-AT4G18450-DAP-Seq(GSE60143)/Homer	ATGGCGGCKG	1e-8	-1.951e+01	0.0000	2587.0	13.50%	3658.2	12.11%
RAP212(AP2EREBP)/col-RAP212-DAP-Seq(GSE60143)/Homer	CGCCGCCATTTT	1e-8	-1.944e+01	0.0000	3226.0	16.83%	4624.2	15.31%
RAP26(AP2EREBP)/colamp-RAP26-DAP-Seq(GSE60143)/Homer	HDATGGCGGCGG	1e-8	-1.897e+01	0.0000	4832.0	25.21%	7084.8	23.45%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-8	-1.870e+01	0.0000	1290.0	6.73%	1738.3	5.75%
DEAR2(AP2EREBP)/colamp-DEAR2-DAP-Seq(GSE60143)/Homer	HCACCGACAWHD	1e-8	-1.848e+01	0.0000	2264.0	11.81%	3185.7	10.55%
ERF15(AP2EREBP)/colamp-ERF15-DAP-Seq(GSE60143)/Homer	WDHAGCMGCCAT	1e-7	-1.828e+01	0.0000	7487.0	39.07%	11210.3	37.11%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e-7	-1.821e+01	0.0000	5366.0	28.00%	7919.9	26.22%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-7	-1.805e+01	0.0000	559.0	2.92%	692.4	2.29%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-7	-1.786e+01	0.0000	1712.0	8.93%	2368.7	7.84%
MYB3R1(MYB)/col-MYB3R1-DAP-Seq(GSE60143)/Homer	WWDTDACCGTTR	1e-7	-1.786e+01	0.0000	485.0	2.53%	590.2	1.95%
At5g65130(AP2EREBP)/colamp-At5g65130-DAP-Seq(GSE60143)/Homer	CCRCCGACAWTN	1e-7	-1.771e+01	0.0000	884.0	4.61%	1156.0	3.83%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-7	-1.754e+01	0.0000	731.0	3.81%	938.6	3.11%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-7	-1.698e+01	0.0000	1459.0	7.61%	2002.2	6.63%
MYB41(MYB)/col-MYB41-DAP-Seq(GSE60143)/Homer	BYTYACCTAA	1e-7	-1.673e+01	0.0000	493.0	2.57%	607.5	2.01%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e-7	-1.670e+01	0.0000	286.0	1.49%	324.9	1.08%
At1g36060(AP2EREBP)/colamp-At1g36060-DAP-Seq(GSE60143)/Homer	NNWWKGTCGGTG	1e-7	-1.655e+01	0.0000	1362.0	7.11%	1863.2	6.17%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-7	-1.630e+01	0.0000	2525.0	13.18%	3604.3	11.93%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-7	-1.630e+01	0.0000	391.0	2.04%	468.5	1.55%
ERF2(AP2EREBP)/colamp-ERF2-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e-6	-1.590e+01	0.0000	4319.0	22.54%	6345.7	21.01%
ESE1(AP2EREBP)/col-ESE1-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e-6	-1.588e+01	0.0000	4616.0	24.09%	6802.2	22.52%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-6	-1.578e+01	0.0000	1046.0	5.46%	1406.8	4.66%
ERF5(AP2EREBP)/colamp-ERF5-DAP-Seq(GSE60143)/Homer	DCMGCCGCCA	1e-6	-1.550e+01	0.0000	2829.0	14.76%	4075.9	13.49%
TGA9(bZIP)/colamp-TGA9-DAP-Seq(GSE60143)/Homer	VTGACGTC	1e-6	-1.545e+01	0.0000	1873.0	9.77%	2634.1	8.72%
MYB3R5(MYB)/col-MYB3R5-DAP-Seq(GSE60143)/Homer	THYAACGGTHAWAWT	1e-6	-1.534e+01	0.0000	131.0	0.68%	128.3	0.42%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-6	-1.531e+01	0.0000	528.0	2.76%	664.8	2.20%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-6	-1.503e+01	0.0000	3045.0	15.89%	4410.2	14.60%
ERF3(AP2EREBP)/colamp-ERF3-DAP-Seq(GSE60143)/Homer	ATGGCGGCGG	1e-6	-1.501e+01	0.0000	3422.0	17.86%	4985.1	16.50%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e-6	-1.461e+01	0.0000	173.0	0.90%	183.1	0.61%
SOL1(CPP)/colamp-SOL1-DAP-Seq(GSE60143)/Homer	ATTTAAATHN	1e-6	-1.459e+01	0.0000	1905.0	9.94%	2692.9	8.91%
HuR(?)/HEK293-HuR-CLIP-Seq(GSE87887)/Homer	BTTTGGTTTG	1e-6	-1.454e+01	0.0000	5416.0	28.26%	8062.0	26.69%
ESE3(AP2EREBP)/col-ESE3-DAP-Seq(GSE60143)/Homer	GACGGTGG	1e-6	-1.448e+01	0.0000	5979.0	31.20%	8935.5	29.58%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-6	-1.447e+01	0.0000	4004.0	20.89%	5885.5	19.48%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-6	-1.443e+01	0.0000	3234.0	16.87%	4707.4	15.58%
CEJ1(AP2EREBP)/col-CEJ1-DAP-Seq(GSE60143)/Homer	WWTGTCGGTG	1e-6	-1.430e+01	0.0000	1874.0	9.78%	2649.5	8.77%
TCX2(CPP)/colamp-TCX2-DAP-Seq(GSE60143)/Homer	NNWWTTYRAAHN	1e-6	-1.408e+01	0.0000	1978.0	10.32%	2808.6	9.30%
AT5G47660(Trihelix)/colamp-AT5G47660-DAP-Seq(GSE60143)/Homer	AWTTTTACCG	1e-6	-1.402e+01	0.0000	2117.0	11.05%	3018.9	9.99%
At1g19210(AP2EREBP)/colamp-At1g19210-DAP-Seq(GSE60143)/Homer	HCACCGACCAHN	1e-6	-1.399e+01	0.0000	2546.0	13.28%	3667.7	12.14%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-5	-1.346e+01	0.0000	912.0	4.76%	1230.3	4.07%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-5	-1.344e+01	0.0000	1839.0	9.60%	2607.9	8.63%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-5	-1.337e+01	0.0000	932.0	4.86%	1260.5	4.17%
At5g04390(C2H2)/col200-At5g04390-DAP-Seq(GSE60143)/Homer	AGTGANDN	1e-5	-1.325e+01	0.0000	8629.0	45.02%	13099.0	43.36%
ERF1(AP2EREBP)/colamp-ERF1-DAP-Seq(GSE60143)/Homer	GGCGGCTR	1e-5	-1.322e+01	0.0000	3790.0	19.78%	5579.0	18.47%
JGL(C2H2)/col-JGL-DAP-Seq(GSE60143)/Homer	ACYTTCAGTT	1e-5	-1.288e+01	0.0000	2569.0	13.40%	3719.0	12.31%
ERF104(AP2EREBP)/col-ERF104-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e-5	-1.283e+01	0.0000	5257.0	27.43%	7848.4	25.98%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-5	-1.281e+01	0.0000	1070.0	5.58%	1468.7	4.86%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-5	-1.270e+01	0.0000	499.0	2.60%	639.8	2.12%
SeqBias: G/A bias	RRRRRRRRRR	1e-5	-1.268e+01	0.0000	19143.0	99.89%	30129.2	99.73%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-5	-1.252e+01	0.0000	463.0	2.42%	589.1	1.95%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-5	-1.247e+01	0.0000	1436.0	7.49%	2015.5	6.67%
MYB77(MYB)/col-MYB77-DAP-Seq(GSE60143)/Homer	NYAACBGYMC	1e-5	-1.245e+01	0.0000	2733.0	14.26%	3974.5	13.16%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-5	-1.236e+01	0.0000	385.0	2.01%	480.3	1.59%
MYB3R4(MYB)/col-MYB3R4-DAP-Seq(GSE60143)/Homer	AWWTAACCGTTR	1e-5	-1.229e+01	0.0000	281.0	1.47%	336.9	1.12%
TGA2(bZIP)/colamp-TGA2-DAP-Seq(GSE60143)/Homer	ACGTCAYCHH	1e-5	-1.215e+01	0.0000	917.0	4.78%	1249.1	4.13%
SHN3(AP2EREBP)/col-SHN3-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e-5	-1.212e+01	0.0000	2887.0	15.06%	4214.0	13.95%
MYB105(MYB)/colamp-MYB105-DAP-Seq(GSE60143)/Homer	RATWCCGTTA	1e-5	-1.210e+01	0.0000	1024.0	5.34%	1407.7	4.66%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-5	-1.206e+01	0.0000	864.0	4.51%	1172.9	3.88%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-5	-1.205e+01	0.0000	124.0	0.65%	128.4	0.43%
MYB81(MYB)/col-MYB81-DAP-Seq(GSE60143)/Homer	NWAACSGWTWNN	1e-5	-1.205e+01	0.0000	2495.0	13.02%	3618.8	11.98%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-5	-1.200e+01	0.0000	108.0	0.56%	108.2	0.36%
CRF4(AP2EREBP)/colamp-CRF4-DAP-Seq(GSE60143)/Homer	CGCCGCCA	1e-5	-1.195e+01	0.0000	3344.0	17.45%	4916.1	16.27%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-5	-1.191e+01	0.0000	790.0	4.12%	1065.6	3.53%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-5	-1.186e+01	0.0000	4657.0	24.30%	6939.5	22.97%
LEP(AP2EREBP)/col-LEP-DAP-Seq(GSE60143)/Homer	CDCCGCCGTC	1e-5	-1.170e+01	0.0000	2431.0	12.68%	3526.6	11.67%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-5	-1.162e+01	0.0000	1012.0	5.28%	1394.2	4.62%
SPL5(SBP)/colamp-SPL5-DAP-Seq(GSE60143)/Homer	NNHGTACGGHNN	1e-5	-1.160e+01	0.0000	1001.0	5.22%	1378.7	4.56%
CAMTA5(CAMTA)/col-CAMTA5-DAP-Seq(GSE60143)/Homer	ACGCGTTTTANACRC	1e-4	-1.145e+01	0.0001	583.0	3.04%	768.0	2.54%
MYB55(MYB)/colamp-MYB55-DAP-Seq(GSE60143)/Homer	YACCWAMC	1e-4	-1.143e+01	0.0001	1514.0	7.90%	2145.0	7.10%
MYB99(MYB)/colamp-MYB99-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e-4	-1.133e+01	0.0001	1243.0	6.49%	1740.5	5.76%
MYB56(MYB)/colamp-MYB56-DAP-Seq(GSE60143)/Homer	HTAACGRMHY	1e-4	-1.125e+01	0.0001	1375.0	7.17%	1938.7	6.42%
ERF73(AP2EREBP)/col-ERF73-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e-4	-1.118e+01	0.0001	4215.0	21.99%	6270.6	20.76%
bHLH28(bHLH)/col-bHLH28-DAP-Seq(GSE60143)/Homer	NHHTGTACGGAH	1e-4	-1.114e+01	0.0001	649.0	3.39%	866.9	2.87%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-4	-1.095e+01	0.0001	661.0	3.45%	885.4	2.93%
GT2(Trihelix)/colamp-GT2-DAP-Seq(GSE60143)/Homer	AMGGTAAAWWWN	1e-4	-1.083e+01	0.0001	1517.0	7.92%	2156.5	7.14%
EMB1789(C3H)/col-EMB1789-DAP-Seq(GSE60143)/Homer	TWTTTACCGYND	1e-4	-1.080e+01	0.0001	554.0	2.89%	731.5	2.42%
SeqBias: TA-repeat	TATATATATA	1e-4	-1.077e+01	0.0001	3398.0	17.73%	5020.6	16.62%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e-4	-1.067e+01	0.0001	339.0	1.77%	425.5	1.41%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e-4	-1.059e+01	0.0001	1373.0	7.16%	1943.2	6.43%
AT3G57600(AP2EREBP)/col-AT3G57600-DAP-Seq(GSE60143)/Homer	GGCGGTGG	1e-4	-1.055e+01	0.0001	3941.0	20.56%	5860.9	19.40%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-4	-1.049e+01	0.0001	59.0	0.31%	52.5	0.17%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-4	-1.048e+01	0.0001	624.0	3.26%	835.2	2.76%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e-4	-1.037e+01	0.0001	694.0	3.62%	938.6	3.11%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-4	-1.029e+01	0.0002	1659.0	8.66%	2377.6	7.87%
MYB65(MYB)/colamp-MYB65-DAP-Seq(GSE60143)/Homer	RACNGTTA	1e-4	-1.029e+01	0.0002	2089.0	10.90%	3028.0	10.02%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e-4	-1.006e+01	0.0002	5596.0	29.20%	8434.1	27.92%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-4	-9.829e+00	0.0002	131.0	0.68%	144.3	0.48%
LBD19(LOBAS2)/colamp-LBD19-DAP-Seq(GSE60143)/Homer	CCKGAAWTTCMGGAW	1e-4	-9.725e+00	0.0003	2890.0	15.08%	4260.5	14.10%
MYB51(MYB)/col-MYB51-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e-4	-9.591e+00	0.0003	1234.0	6.44%	1747.3	5.78%
LBD13(LOBAS2)/colamp-LBD13-DAP-Seq(GSE60143)/Homer	KCCGTNWTTTBCGGC	1e-4	-9.555e+00	0.0003	2475.0	12.91%	3628.9	12.01%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-4	-9.518e+00	0.0003	948.0	4.95%	1321.9	4.38%
STZ(C2H2)/colamp-STZ-DAP-Seq(GSE60143)/Homer	HNBTCACT	1e-4	-9.381e+00	0.0004	9002.0	46.97%	13780.6	45.62%
SPL13(SBP)/col-SPL13-DAP-Seq(GSE60143)/Homer	WAHTGTACGGAH	1e-4	-9.277e+00	0.0004	200.0	1.04%	239.5	0.79%
SPL14(SBP)/col-SPL14-DAP-Seq(GSE60143)/Homer	NNWHTGTACGGAHNH	1e-4	-9.225e+00	0.0004	342.0	1.78%	438.6	1.45%
MYB70(MYB)/col-MYB70-DAP-Seq(GSE60143)/Homer	WTAACNGTTA	1e-4	-9.215e+00	0.0004	2441.0	12.74%	3582.4	11.86%
SeqBias: GA-repeat	GAGAGAGAGA	1e-3	-9.199e+00	0.0004	10541.0	55.00%	16211.0	53.66%
AT2G20110(CPP)/colamp-AT2G20110-DAP-Seq(GSE60143)/Homer	ATTYAAATHY	1e-3	-9.167e+00	0.0004	1878.0	9.80%	2725.7	9.02%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-3	-9.132e+00	0.0005	4701.0	24.53%	7066.5	23.39%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-3	-9.116e+00	0.0005	401.0	2.09%	523.7	1.73%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-3	-8.993e+00	0.0005	458.0	2.39%	606.4	2.01%
TGA4(bZIP)/colamp-TGA4-DAP-Seq(GSE60143)/Homer	RTGACGTCAKCW	1e-3	-8.956e+00	0.0005	403.0	2.10%	527.0	1.74%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-3	-8.772e+00	0.0006	400.0	2.09%	525.0	1.74%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-3	-8.716e+00	0.0007	2031.0	10.60%	2965.4	9.82%
MYB3(MYB)/Arabidopsis-MYB3-ChIP-Seq(GSE80564)/Homer	GKTAGGTRGG	1e-3	-8.490e+00	0.0009	2405.0	12.55%	3540.3	11.72%
SeqBias: C/A-bias	MMMMMMMMMM	1e-3	-8.333e+00	0.0010	19094.0	99.63%	30044.0	99.45%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e-3	-8.225e+00	0.0011	107.0	0.56%	118.4	0.39%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e-3	-8.007e+00	0.0014	500.0	2.61%	675.3	2.24%
MYB73(MYB)/col-MYB73-DAP-Seq(GSE60143)/Homer	NNNNHAACNGHHDHN	1e-3	-7.967e+00	0.0014	3186.0	16.62%	4750.8	15.73%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e-3	-7.902e+00	0.0015	21.0	0.11%	14.6	0.05%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-3	-7.902e+00	0.0015	1281.0	6.68%	1840.2	6.09%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-3	-7.878e+00	0.0015	279.0	1.46%	357.8	1.18%
MYB67(MYB)/col-MYB67-DAP-Seq(GSE60143)/Homer	YYYACCTAAC	1e-3	-7.839e+00	0.0016	1293.0	6.75%	1859.5	6.16%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-3	-7.737e+00	0.0017	1178.0	6.15%	1687.7	5.59%
ANAC079(NAC)/colamp-ANAC079-DAP-Seq(GSE60143)/Homer	TACACGCAACCT	1e-3	-7.729e+00	0.0017	654.0	3.41%	904.5	2.99%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-3	-7.705e+00	0.0018	67.0	0.35%	68.4	0.23%
PUCHI(AP2EREBP)/colamp-PUCHI-DAP-Seq(GSE60143)/Homer	GCGCCGTY	1e-3	-7.691e+00	0.0018	4516.0	23.56%	6815.0	22.56%
MYB58(MYB)/colamp-MYB58-DAP-Seq(GSE60143)/Homer	YYYACCWACC	1e-3	-7.602e+00	0.0020	1253.0	6.54%	1802.9	5.97%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-3	-7.471e+00	0.0022	1415.0	7.38%	2049.9	6.79%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-3	-7.459e+00	0.0022	342.0	1.78%	450.2	1.49%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e-3	-7.426e+00	0.0023	905.0	4.72%	1281.9	4.24%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e-3	-7.419e+00	0.0023	975.0	5.09%	1386.9	4.59%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-3	-7.362e+00	0.0024	1520.0	7.93%	2210.1	7.32%
TGA6(bZIP)/colamp-TGA6-DAP-Seq(GSE60143)/Homer	TGACGTCABC	1e-3	-7.231e+00	0.0028	876.0	4.57%	1240.9	4.11%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-3	-7.139e+00	0.0030	2975.0	15.52%	4443.1	14.71%
CELF2(RRM)/JSL1-CELF2-CLIP-Seq(GSE71264)/Homer	RGTGTCAG	1e-3	-7.089e+00	0.0032	634.0	3.31%	881.9	2.92%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e-3	-7.008e+00	0.0034	16.0	0.08%	10.9	0.04%
TGA1(bZIP)/colamp-TGA1-DAP-Seq(GSE60143)/Homer	TGACGTCAKC	1e-3	-7.004e+00	0.0034	555.0	2.90%	765.9	2.54%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-3	-6.984e+00	0.0035	431.0	2.25%	583.5	1.93%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-2	-6.895e+00	0.0038	116.0	0.61%	135.2	0.45%
MYB88(MYB)/col-MYB88-DAP-Seq(GSE60143)/Homer	HNACGCTCCT	1e-2	-6.761e+00	0.0043	6004.0	31.33%	9157.2	30.31%
SPL15(SBP)/colamp-SPL15-DAP-Seq(GSE60143)/Homer	WDWMMGTACADW	1e-2	-6.721e+00	0.0044	2439.0	12.73%	3627.7	12.01%
MYB92(MYB)/colamp-MYB92-DAP-Seq(GSE60143)/Homer	GGTAGGTR	1e-2	-6.712e+00	0.0045	1386.0	7.23%	2017.6	6.68%
AT2G28810(C2C2dof)/colamp-AT2G28810-DAP-Seq(GSE60143)/Homer	VAAAAAGTWA	1e-2	-6.583e+00	0.0051	3496.0	18.24%	5261.7	17.42%
MYB17(MYB)/colamp-MYB17-DAP-Seq(GSE60143)/Homer	GGTAGGTGRG	1e-2	-6.548e+00	0.0052	663.0	3.46%	930.2	3.08%
bHLH157(bHLH)/col-bHLH157-DAP-Seq(GSE60143)/Homer	KACACGTCTCTY	1e-2	-6.506e+00	0.0054	337.0	1.76%	450.8	1.49%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-2	-6.492e+00	0.0055	350.0	1.83%	469.2	1.55%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-2	-6.485e+00	0.0055	2398.0	12.51%	3569.5	11.82%
HY5(bZIP)/colamp-HY5-DAP-Seq(GSE60143)/Homer	RRTSACGTSD	1e-2	-6.438e+00	0.0057	1456.0	7.60%	2128.9	7.05%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e-2	-6.413e+00	0.0059	2564.0	13.38%	3826.5	12.67%
AT1G47655(C2C2dof)/colamp-AT1G47655-DAP-Seq(GSE60143)/Homer	YHACTTTTTS	1e-2	-6.395e+00	0.0059	5528.0	28.84%	8426.0	27.89%
AT5G23930(mTERF)/col-AT5G23930-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e-2	-6.324e+00	0.0064	6990.0	36.47%	10713.7	35.46%
AtGRF6(GRF)/col-AtGRF6-DAP-Seq(GSE60143)/Homer	NTGTCAGADNNNNNN	1e-2	-6.259e+00	0.0068	1905.0	9.94%	2817.7	9.33%
ANAC038(NAC)/col-ANAC038-DAP-Seq(GSE60143)/Homer	ACACGTWAYC	1e-2	-6.234e+00	0.0069	3374.0	17.61%	5081.9	16.82%
CAMTA1(CAMTA)/col-CAMTA1-DAP-Seq(GSE60143)/Homer	WWAACGCGTT	1e-2	-6.049e+00	0.0083	1403.0	7.32%	2054.6	6.80%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-2	-5.912e+00	0.0095	289.0	1.51%	385.8	1.28%
ANAC046(NAC)/colamp-ANAC046-DAP-Seq(GSE60143)/Homer	ACACGYWAYC	1e-2	-5.899e+00	0.0095	3088.0	16.11%	4648.0	15.39%
GTL1(Trihelix)/colamp-GTL1-DAP-Seq(GSE60143)/Homer	WWTTTACCKY	1e-2	-5.853e+00	0.0099	1577.0	8.23%	2323.2	7.69%
ATHB15(HB)/col-ATHB15-DAP-Seq(GSE60143)/Homer	GYAATSATTA	1e-2	-5.679e+00	0.0118	376.0	1.96%	514.3	1.70%
DEL1(E2FDP)/colamp-DEL1-DAP-Seq(GSE60143)/Homer	TTCCCGCCAA	1e-2	-5.662e+00	0.0120	7.0	0.04%	3.0	0.01%
At4g31060(AP2EREBP)/colamp-At4g31060-DAP-Seq(GSE60143)/Homer	CACCGACAAW	1e-2	-5.620e+00	0.0124	719.0	3.75%	1025.2	3.39%
ZML1(C2C2gata)/colamp-ZML1-DAP-Seq(GSE60143)/Homer	ATCWYRACCGTTSRW	1e-2	-5.510e+00	0.0138	20.0	0.10%	16.6	0.05%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-2	-5.464e+00	0.0144	172.0	0.90%	220.1	0.73%
AT4G26030(C2H2)/col-AT4G26030-DAP-Seq(GSE60143)/Homer	BYYACCWACY	1e-2	-5.449e+00	0.0146	1295.0	6.76%	1900.3	6.29%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-2	-5.357e+00	0.0159	1227.0	6.40%	1799.0	5.95%
AT5G66940(C2C2dof)/col-AT5G66940-DAP-Seq(GSE60143)/Homer	NNHACTTTWT	1e-2	-5.355e+00	0.0159	3042.0	15.87%	4590.2	15.19%
ATHB20(Homeobox)/colamp-ATHB20-DAP-Seq(GSE60143)/Homer	CAATHATT	1e-2	-5.333e+00	0.0162	547.0	2.85%	771.2	2.55%
NGA4(ABI3VP1)/col-NGA4-DAP-Seq(GSE60143)/Homer	TKNTCAGGTG	1e-2	-5.331e+00	0.0162	4795.0	25.02%	7315.1	24.21%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-2	-5.325e+00	0.0162	335.0	1.75%	457.1	1.51%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-2	-5.248e+00	0.0174	925.0	4.83%	1341.7	4.44%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-2	-5.108e+00	0.0200	352.0	1.84%	484.3	1.60%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-2	-5.101e+00	0.0201	1283.0	6.69%	1888.8	6.25%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-2	-5.022e+00	0.0216	415.0	2.17%	578.7	1.92%
BIM3(bHLH)/col-BIM3-DAP-Seq(GSE60143)/Homer	TWVTCACGTGAB	1e-2	-4.891e+00	0.0246	236.0	1.23%	316.8	1.05%
SPL3(SBP)/colamp-SPL3-DAP-Seq(GSE60143)/Homer	WDTTGTACGGAH	1e-2	-4.814e+00	0.0264	86.0	0.45%	103.6	0.34%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-2	-4.785e+00	0.0271	114.0	0.59%	142.8	0.47%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-2	-4.743e+00	0.0282	1274.0	6.65%	1882.0	6.23%
ATY13(MYB)/col-ATY13-DAP-Seq(GSE60143)/Homer	YYYAACYRHH	1e-2	-4.738e+00	0.0282	5127.0	26.75%	7853.1	25.99%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e-2	-4.693e+00	0.0294	469.0	2.45%	662.9	2.19%
MYB30(MYB)/colamp-MYB30-DAP-Seq(GSE60143)/Homer	AGGTAGTTGG	1e-2	-4.656e+00	0.0304	1318.0	6.88%	1950.9	6.46%
dof24(C2C2dof)/col-dof24-DAP-Seq(GSE60143)/Homer	TWMCTTTTTG	1e-2	-4.636e+00	0.0309	3147.0	16.42%	4773.3	15.80%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-2	-4.611e+00	0.0316	1203.0	6.28%	1776.0	5.88%
EPR1(MYBrelated)/colamp-EPR1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e-1	-4.577e+00	0.0325	448.0	2.34%	632.4	2.09%
LHY1(MYBrelated)/col-LHY1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e-1	-4.577e+00	0.0325	448.0	2.34%	632.4	2.09%
ASHR1(ND)/col-ASHR1-DAP-Seq(GSE60143)/Homer	NTGGTGAN	1e-1	-4.555e+00	0.0331	1883.0	9.83%	2820.4	9.34%
DREB26(AP2EREBP)/col-DREB26-DAP-Seq(GSE60143)/Homer	CCACCGACAH	1e-1	-4.551e+00	0.0331	692.0	3.61%	999.5	3.31%
PHV(HB)/col-PHV-DAP-Seq(GSE60143)/Homer	RTAATSATTA	1e-1	-4.545e+00	0.0332	431.0	2.25%	607.7	2.01%
OBP3(C2C2dof)/col-OBP3-DAP-Seq(GSE60143)/Homer	NYWACTTTTT	1e-1	-4.500e+00	0.0346	4770.0	24.89%	7304.4	24.18%
MYB40(MYB)/col-MYB40-DAP-Seq(GSE60143)/Homer	TGGTAGGTRARA	1e-1	-4.380e+00	0.0389	415.0	2.17%	585.5	1.94%
CBF3(AP2EREBP)/colamp-CBF3-DAP-Seq(GSE60143)/Homer	YNRCCGACATNN	1e-1	-4.363e+00	0.0394	745.0	3.89%	1082.2	3.58%
SPL1(SBP)/colamp-SPL1-DAP-Seq(GSE60143)/Homer	HYGTACDTWH	1e-1	-4.308e+00	0.0415	3149.0	16.43%	4786.3	15.84%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-1	-4.289e+00	0.0422	208.0	1.09%	280.1	0.93%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-1	-4.235e+00	0.0443	918.0	4.79%	1347.0	4.46%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-1	-4.226e+00	0.0446	704.0	3.67%	1022.0	3.38%
ASL18(LOBAS2)/colamp-ASL18-DAP-Seq(GSE60143)/Homer	CCGGAAAWTCMGGAR	1e-1	-4.210e+00	0.0452	3073.0	16.03%	4672.0	15.46%
AT1G76870(Trihelix)/col-AT1G76870-DAP-Seq(GSE60143)/Homer	AAAACCRGWW	1e-1	-4.154e+00	0.0476	571.0	2.98%	822.3	2.72%
At4g28140(AP2EREBP)/colamp-At4g28140-DAP-Seq(GSE60143)/Homer	DCCACCGACCAW	1e-1	-4.151e+00	0.0476	694.0	3.62%	1008.2	3.34%
At3g11280(MYBrelated)/col-At3g11280-DAP-Seq(GSE60143)/Homer	GATAAGRT	1e-1	-4.146e+00	0.0477	1012.0	5.28%	1492.6	4.94%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-1	-4.136e+00	0.0480	3656.0	19.08%	5580.9	18.47%
ARF16(ARF)/col-ARF16-DAP-Seq(GSE60143)/Homer	ATTTTACGAT	1e-1	-3.996e+00	0.0551	205.0	1.07%	278.4	0.92%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e-1	-3.980e+00	0.0558	5561.0	29.02%	8560.0	28.33%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-1	-3.980e+00	0.0558	283.0	1.48%	393.4	1.30%
BBX31(Orphan)/col-BBX31-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e-1	-3.971e+00	0.0559	2345.0	12.24%	3549.9	11.75%
dof45(C2C2dof)/col-dof45-DAP-Seq(GSE60143)/Homer	NVAWAAAGTN	1e-1	-3.943e+00	0.0573	3741.0	19.52%	5719.4	18.93%
ANAC070(NAC)/colamp-ANAC070-DAP-Seq(GSE60143)/Homer	CTTRHDNHNBAAGHW	1e-1	-3.927e+00	0.0581	1394.0	7.27%	2082.8	6.89%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-1	-3.917e+00	0.0585	1505.0	7.85%	2253.8	7.46%
WRKY8(WRKY)/colamp-WRKY8-DAP-Seq(GSE60143)/Homer	CGTTGACTTT	1e-1	-3.906e+00	0.0589	95.0	0.50%	120.1	0.40%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-1	-3.884e+00	0.0600	130.0	0.68%	170.8	0.57%
At1g76110(ARID)/colamp-At1g76110-DAP-Seq(GSE60143)/Homer	ATTTAATG	1e-1	-3.852e+00	0.0618	939.0	4.90%	1386.6	4.59%
AT1G20910(ARID)/col-AT1G20910-DAP-Seq(GSE60143)/Homer	THAATTRAWN	1e-1	-3.777e+00	0.0664	2054.0	10.72%	3104.5	10.28%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-1	-3.737e+00	0.0689	83.0	0.43%	104.4	0.35%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-1	-3.722e+00	0.0697	1038.0	5.42%	1540.9	5.10%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-1	-3.700e+00	0.0710	1525.0	7.96%	2289.5	7.58%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-1	-3.690e+00	0.0715	1395.0	7.28%	2089.5	6.92%
MYB119(MYB)/colamp-MYB119-DAP-Seq(GSE60143)/Homer	YRACCGTTACDD	1e-1	-3.663e+00	0.0733	524.0	2.73%	758.1	2.51%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-1	-3.604e+00	0.0774	200.0	1.04%	274.3	0.91%
At5g05790(MYBrelated)/col-At5g05790-DAP-Seq(GSE60143)/Homer	AYCTTATC	1e-1	-3.604e+00	0.0774	1071.0	5.59%	1593.6	5.27%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e-1	-3.587e+00	0.0783	285.0	1.49%	400.9	1.33%
CDF3(C2C2dof)/colamp-CDF3-DAP-Seq(GSE60143)/Homer	AAAAGTRM	1e-1	-3.563e+00	0.0799	2660.0	13.88%	4050.3	13.41%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-1	-3.560e+00	0.0800	6167.0	32.18%	9527.3	31.54%
FEA4(bZIP)/Corn-FEA4-ChIP-Seq(GSE61954)/Homer	TGACGTCACS	1e-1	-3.463e+00	0.0878	1707.0	8.91%	2576.6	8.53%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-1	-3.457e+00	0.0880	1780.0	9.29%	2689.5	8.90%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-1	-3.454e+00	0.0880	72.0	0.38%	90.8	0.30%
AT2G31460(REMB3)/col-AT2G31460-DAP-Seq(GSE60143)/Homer	WNWARWDGAAATGAT	1e-1	-3.423e+00	0.0906	439.0	2.29%	633.2	2.10%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-1	-3.375e+00	0.0947	422.0	2.20%	609.0	2.02%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-1	-3.348e+00	0.0971	1178.0	6.15%	1763.3	5.84%
bZIP44(bZIP)/colamp-bZIP44-DAP-Seq(GSE60143)/Homer	NDTGCCACGTCAGCH	1e-1	-3.345e+00	0.0971	27.0	0.14%	29.5	0.10%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-1	-3.334e+00	0.0978	178.0	0.93%	245.0	0.81%
LBD2(LOBAS2)/colamp-LBD2-DAP-Seq(GSE60143)/Homer	TCCGAWTTTTTCGGN	1e-1	-3.324e+00	0.0986	450.0	2.35%	651.2	2.16%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-1	-3.314e+00	0.0992	1864.0	9.73%	2823.5	9.35%
AT3G52440(C2C2dof)/colamp-AT3G52440-DAP-Seq(GSE60143)/Homer	DTHACTTTTT	1e-1	-3.297e+00	0.1006	3366.0	17.56%	5158.4	17.08%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-1	-3.262e+00	0.1039	493.0	2.57%	717.4	2.37%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-1	-3.234e+00	0.1065	157.0	0.82%	214.9	0.71%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-1	-3.229e+00	0.1067	144.0	0.75%	195.5	0.65%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e-1	-3.208e+00	0.1087	124.0	0.65%	166.6	0.55%
MYB10(MYB)/col-MYB10-DAP-Seq(GSE60143)/Homer	YCCACCTACCHH	1e-1	-3.208e+00	0.1087	437.0	2.28%	633.5	2.10%
bZIP69(bZIP)/col-bZIP69-DAP-Seq(GSE60143)/Homer	GACAGCTGKCAW	1e-1	-3.195e+00	0.1094	213.0	1.11%	297.3	0.98%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-1	-3.183e+00	0.1105	221.0	1.15%	309.2	1.02%
At4g01280(MYBrelated)/colamp-At4g01280-DAP-Seq(GSE60143)/Homer	AAATATCT	1e-1	-3.136e+00	0.1155	654.0	3.41%	964.1	3.19%
OBP1(C2C2dof)/col-OBP1-DAP-Seq(GSE60143)/Homer	NHHACTTTWT	1e-1	-3.123e+00	0.1167	4362.0	22.76%	6720.2	22.24%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e-1	-3.113e+00	0.1175	45.0	0.23%	54.8	0.18%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-1	-3.108e+00	0.1178	573.0	2.99%	841.5	2.79%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e-1	-3.107e+00	0.1178	401.0	2.09%	580.4	1.92%
JKD(C2H2)/col-JKD-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTT	1e-1	-3.092e+00	0.1189	215.0	1.12%	301.3	1.00%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-1	-3.082e+00	0.1198	135.0	0.70%	183.1	0.61%
MYB118(MYB)/colamp-MYB118-DAP-Seq(GSE60143)/Homer	TAWCCGTTAC	1e-1	-3.081e+00	0.1198	530.0	2.77%	776.1	2.57%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-1	-3.026e+00	0.1260	1269.0	6.62%	1911.7	6.33%
Adof1(C2C2dof)/col-Adof1-DAP-Seq(GSE60143)/Homer	NRWAAAGYDV	1e-1	-2.989e+00	0.1303	4224.0	22.04%	6510.5	21.55%
bHLH10(bHLH)/colamp-bHLH10-DAP-Seq(GSE60143)/Homer	YACCGACA	1e-1	-2.945e+00	0.1358	541.0	2.82%	795.8	2.63%
AT5G63260(C3H)/col-AT5G63260-DAP-Seq(GSE60143)/Homer	RAAAAAGTRA	1e-1	-2.940e+00	0.1362	3443.0	17.97%	5292.4	17.52%
AT3G12130(C3H)/colamp-AT3G12130-DAP-Seq(GSE60143)/Homer	TMACTTTTTV	1e-1	-2.939e+00	0.1362	3598.0	18.77%	5534.7	18.32%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e-1	-2.926e+00	0.1373	77.0	0.40%	100.9	0.33%
WRKY30(WRKY)/colamp-WRKY30-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e-1	-2.890e+00	0.1420	229.0	1.19%	324.7	1.07%
HAT1(Homeobox)/col-HAT1-DAP-Seq(GSE60143)/Homer	SCAATCATTGNN	1e-1	-2.878e+00	0.1432	188.0	0.98%	263.5	0.87%
VIP1(bZIP)/col-VIP1-DAP-Seq(GSE60143)/Homer	NTTGACAGCTGTCAN	1e-1	-2.865e+00	0.1448	322.0	1.68%	464.5	1.54%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-1	-2.850e+00	0.1465	1473.0	7.69%	2231.2	7.39%
WRKY21(WRKY)/colamp-WRKY21-DAP-Seq(GSE60143)/Homer	DCGTTGACTTTT	1e-1	-2.794e+00	0.1545	82.0	0.43%	108.1	0.36%
WRKY46(WRKY)/colamp-WRKY46-DAP-Seq(GSE60143)/Homer	AAAGTCAACGSN	1e-1	-2.790e+00	0.1548	49.0	0.26%	61.9	0.20%
ATY19(MYB)/col-ATY19-DAP-Seq(GSE60143)/Homer	YYCACCWACCAT	1e-1	-2.772e+00	0.1571	914.0	4.77%	1370.0	4.53%
At5g62940(C2C2dof)/col-At5g62940-DAP-Seq(GSE60143)/Homer	WHWHHACTTTTT	1e-1	-2.767e+00	0.1575	5071.0	26.46%	7846.1	25.97%
Rap210(AP2EREBP)/col-Rap210-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e-1	-2.752e+00	0.1594	1120.0	5.84%	1688.5	5.59%
AT1G76880(Trihelix)/col-AT1G76880-DAP-Seq(GSE60143)/Homer	ACGGTAAAAW	1e-1	-2.740e+00	0.1609	458.0	2.39%	672.8	2.23%
At3g45610(C2C2dof)/col-At3g45610-DAP-Seq(GSE60143)/Homer	TWACTTTTTS	1e-1	-2.734e+00	0.1614	2166.0	11.30%	3310.7	10.96%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-1	-2.703e+00	0.1662	430.0	2.24%	630.1	2.09%
AT3G60490(AP2EREBP)/colamp-AT3G60490-DAP-Seq(GSE60143)/Homer	NNRCCGACANNNNNN	1e-1	-2.690e+00	0.1677	525.0	2.74%	775.8	2.57%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e-1	-2.663e+00	0.1718	488.0	2.55%	719.7	2.38%
At1g22810(AP2EREBP)/colamp-At1g22810-DAP-Seq(GSE60143)/Homer	BCACCGACANNN	1e-1	-2.656e+00	0.1727	859.0	4.48%	1288.1	4.26%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-1	-2.651e+00	0.1730	91.0	0.47%	122.6	0.41%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-1	-2.638e+00	0.1749	181.0	0.94%	255.4	0.85%
At1g77640(AP2EREBP)/col-At1g77640-DAP-Seq(GSE60143)/Homer	TGTCGGTGGA	1e-1	-2.625e+00	0.1767	441.0	2.30%	649.0	2.15%
WRKY25(WRKY)/colamp-WRKY25-DAP-Seq(GSE60143)/Homer	NNNNHRGTCAAMNNN	1e-1	-2.597e+00	0.1811	960.0	5.01%	1445.0	4.78%
GRF9(GRF)/colamp-GRF9-DAP-Seq(GSE60143)/Homer	NWCTGACANNNNNNN	1e-1	-2.589e+00	0.1823	1450.0	7.57%	2203.7	7.29%
MYB93(MYB)/colamp-MYB93-DAP-Seq(GSE60143)/Homer	GGTAGGTGRD	1e-1	-2.570e+00	0.1851	1409.0	7.35%	2140.7	7.09%
RKD2(RWPRK)/colamp-RKD2-DAP-Seq(GSE60143)/Homer	GACKTTTCRDCTTCC	1e-1	-2.543e+00	0.1897	893.0	4.66%	1343.9	4.45%
WRKY47(WRKY)/colamp-WRKY47-DAP-Seq(GSE60143)/Homer	WAAGTCAACGBT	1e-1	-2.536e+00	0.1906	197.0	1.03%	280.4	0.93%
WRKY50(WRKY)/col-WRKY50-DAP-Seq(GSE60143)/Homer	NNTTGACTWNNGNNN	1e-1	-2.501e+00	0.1968	795.0	4.15%	1194.0	3.95%
HSFA6A(HSF)/col-HSFA6A-DAP-Seq(GSE60143)/Homer	RGAAGNTTCTAGAAN	1e-1	-2.493e+00	0.1979	33.0	0.17%	40.5	0.13%
MGP(C2H2)/colamp-MGP-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTW	1e-1	-2.477e+00	0.2005	261.0	1.36%	378.0	1.25%
AGL16(MADS)/col-AGL16-DAP-Seq(GSE60143)/Homer	TWCCHWATWDGGAAA	1e-1	-2.474e+00	0.2007	99.0	0.52%	135.3	0.45%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e-1	-2.459e+00	0.2033	103.0	0.54%	141.3	0.47%
SRS7(SRS)/colamp-SRS7-DAP-Seq(GSE60143)/Homer	HATAGGTTTH	1e-1	-2.431e+00	0.2084	3975.0	20.74%	6146.1	20.34%
AT3G10113(MYBrelated)/col-AT3G10113-DAP-Seq(GSE60143)/Homer	WNAAATATCWWN	1e-1	-2.415e+00	0.2112	508.0	2.65%	754.6	2.50%
MYB96(MYB)/colamp-MYB96-DAP-Seq(GSE60143)/Homer	WGGTRGTTGG	1e-1	-2.412e+00	0.2114	990.0	5.17%	1496.5	4.95%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-1	-2.402e+00	0.2130	186.0	0.97%	265.5	0.88%
DDF2(AP2EREBP)/col-DDF2-DAP-Seq(GSE60143)/Homer	GATGTCGRCR	1e-1	-2.360e+00	0.2215	69.0	0.36%	92.9	0.31%
ANAC045(NAC)/col-ANAC045-DAP-Seq(GSE60143)/Homer	DNCKTVNNNNNNAMG	1e-1	-2.317e+00	0.2306	2771.0	14.46%	4269.7	14.13%
At1g14580(C2H2)/colamp-At1g14580-DAP-Seq(GSE60143)/Homer	CASAAAAMGACAAAA	1e-1	-2.314e+00	0.2307	192.0	1.00%	275.2	0.91%
MYB98(MYB)/col-MYB98-DAP-Seq(GSE60143)/Homer	NWDCCGTTAC	1e-1	-2.307e+00	0.2319	536.0	2.80%	799.1	2.65%
dof43(C2C2dof)/colamp-dof43-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e0	-2.300e+00	0.2328	2107.0	10.99%	3234.8	10.71%
REM19(REM)/colamp-REM19-DAP-Seq(GSE60143)/Homer	AAAAAAAA	1e0	-2.296e+00	0.2331	320.0	1.67%	469.5	1.55%
WRKY33(WRKY)/col-WRKY33-DAP-Seq(GSE60143)/Homer	CGTTGACYAW	1e0	-2.283e+00	0.2357	658.0	3.43%	987.7	3.27%
bZIP42(bZIP)/colamp-bZIP42-DAP-Seq(GSE60143)/Homer	GCCACGTCAGCA	1e0	-2.281e+00	0.2357	6.0	0.03%	5.5	0.02%
VND6(NAC)/col-VND6-DAP-Seq(GSE60143)/Homer	DCTTNHTTTTYAMGY	1e0	-2.253e+00	0.2417	1384.0	7.22%	2111.4	6.99%
ATHB18(Homeobox)/colamp-ATHB18-DAP-Seq(GSE60143)/Homer	YCAATSATTG	1e0	-2.238e+00	0.2446	206.0	1.07%	297.5	0.98%
AT1G23810(Orphan)/col-AT1G23810-DAP-Seq(GSE60143)/Homer	TTCTAGAAGSTTCTA	1e0	-2.219e+00	0.2487	35.0	0.18%	44.6	0.15%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-2.212e+00	0.2499	256.0	1.34%	373.0	1.23%
DAG2(C2C2dof)/col-DAG2-DAP-Seq(GSE60143)/Homer	WWTTHACTTTTT	1e0	-2.179e+00	0.2576	2263.0	11.81%	3482.1	11.53%
At4g16750(AP2EREBP)/col-At4g16750-DAP-Seq(GSE60143)/Homer	HACCGACAHA	1e0	-2.169e+00	0.2594	1267.0	6.61%	1932.8	6.40%
TINY(AP2EREBP)/col-TINY-DAP-Seq(GSE60143)/Homer	NNCACCGACA	1e0	-2.162e+00	0.2607	497.0	2.59%	742.6	2.46%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-2.126e+00	0.2695	138.0	0.72%	196.2	0.65%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-2.126e+00	0.2695	142.0	0.74%	202.9	0.67%
At1g64620(C2C2dof)/colamp-At1g64620-DAP-Seq(GSE60143)/Homer	CACTTTTT	1e0	-2.120e+00	0.2700	2264.0	11.81%	3486.8	11.54%
TRP2(MYBrelated)/colamp-TRP2-DAP-Seq(GSE60143)/Homer	TAAACCCT	1e0	-2.112e+00	0.2715	199.0	1.04%	288.7	0.96%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-2.096e+00	0.2751	1156.0	6.03%	1762.1	5.83%
At4g32800(AP2EREBP)/colamp-At4g32800-DAP-Seq(GSE60143)/Homer	DYCACCGACAHWWWH	1e0	-2.071e+00	0.2813	198.0	1.03%	287.0	0.95%
WRKY15(WRKY)/col-WRKY15-DAP-Seq(GSE60143)/Homer	VGTTGACTWW	1e0	-2.029e+00	0.2929	805.0	4.20%	1221.0	4.04%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-2.027e+00	0.2929	224.0	1.17%	327.3	1.08%
MYB33(MYB)/col-MYB33-DAP-Seq(GSE60143)/Homer	DDTYNGTTAN	1e0	-2.005e+00	0.2985	2588.0	13.50%	3997.5	13.23%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e0	-1.998e+00	0.2998	1914.0	9.99%	2945.9	9.75%
NST1(NAC)/colamp-NST1-DAP-Seq(GSE60143)/Homer	WRCTTRWWNWWYAAG	1e0	-1.998e+00	0.2998	1011.0	5.28%	1540.5	5.10%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-1.939e+00	0.3164	3812.0	19.89%	5917.0	19.59%
At5g08520(MYBrelated)/colamp-At5g08520-DAP-Seq(GSE60143)/Homer	ADBSTTATCY	1e0	-1.934e+00	0.3173	1264.0	6.60%	1935.4	6.41%
AT1G10720(BSD)/col-AT1G10720-DAP-Seq(GSE60143)/Homer	TTCTAGAAKCTTCTA	1e0	-1.926e+00	0.3192	22.0	0.11%	27.0	0.09%
RAP21(AP2EREBP)/colamp-RAP21-DAP-Seq(GSE60143)/Homer	BCACCGACAHNN	1e0	-1.924e+00	0.3192	286.0	1.49%	424.0	1.40%
AT3G16280(AP2EREBP)/colamp-AT3G16280-DAP-Seq(GSE60143)/Homer	HCACCGACAHHDHHN	1e0	-1.901e+00	0.3258	570.0	2.97%	860.4	2.85%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-1.879e+00	0.3322	19.0	0.10%	23.9	0.08%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-1.871e+00	0.3339	1481.0	7.73%	2275.8	7.53%
HSFB4(HSF)/col-HSFB4-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-1.869e+00	0.3339	31.0	0.16%	40.3	0.13%
WRKY43(WRKY)/colamp-WRKY43-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTT	1e0	-1.865e+00	0.3346	252.0	1.31%	372.6	1.23%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.852e+00	0.3381	280.0	1.46%	415.0	1.37%
CUC3(NAC)/col-CUC3-DAP-Seq(GSE60143)/Homer	TRCKTGWNNNACAMG	1e0	-1.847e+00	0.3388	368.0	1.92%	550.8	1.82%
WRKY27(WRKY)/colamp-WRKY27-DAP-Seq(GSE60143)/Homer	NHGTTGACYTWD	1e0	-1.835e+00	0.3424	739.0	3.86%	1123.6	3.72%
ANAC042(NAC)/col-ANAC042-DAP-Seq(GSE60143)/Homer	CGTNDHNDHNACGKY	1e0	-1.824e+00	0.3453	2881.0	15.03%	4464.8	14.78%
ANAC083(NAC)/col-ANAC083-DAP-Seq(GSE60143)/Homer	CKTRWNNNWYAMGTA	1e0	-1.824e+00	0.3453	862.0	4.50%	1314.5	4.35%
STOP1(C2H2)/colamp-STOP1-DAP-Seq(GSE60143)/Homer	DTATCTGGKGRAGGT	1e0	-1.819e+00	0.3453	572.0	2.98%	865.0	2.86%
At2g44940(AP2EREBP)/colamp-At2g44940-DAP-Seq(GSE60143)/Homer	NYACCGACAHNNNNN	1e0	-1.809e+00	0.3480	348.0	1.82%	520.2	1.72%
HDG1(Homeobox)/col100-HDG1-DAP-Seq(GSE60143)/Homer	DDYAATTAATGH	1e0	-1.808e+00	0.3480	694.0	3.62%	1054.9	3.49%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-1.807e+00	0.3480	1159.0	6.05%	1776.4	5.88%
HAT2(Homeobox)/colamp-HAT2-DAP-Seq(GSE60143)/Homer	CYAATSATTR	1e0	-1.806e+00	0.3480	919.0	4.80%	1403.1	4.64%
MYB44(MYB)/colamp-MYB44-DAP-Seq(GSE60143)/Homer	CVGTTWWKTCNGTTA	1e0	-1.782e+00	0.3542	95.0	0.50%	135.8	0.45%
AT3G42860(zfGRF)/col-AT3G42860-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e0	-1.779e+00	0.3544	202.0	1.05%	297.4	0.98%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e0	-1.778e+00	0.3544	3299.0	17.21%	5121.6	16.95%
WRKY75(WRKY)/col-WRKY75-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e0	-1.777e+00	0.3544	787.0	4.11%	1199.7	3.97%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-1.772e+00	0.3547	41.0	0.21%	55.6	0.18%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-1.766e+00	0.3559	1515.0	7.91%	2332.4	7.72%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e0	-1.745e+00	0.3626	394.0	2.06%	592.6	1.96%
CBF1(AP2EREBP)/colamp-CBF1-DAP-Seq(GSE60143)/Homer	YRCCGACATN	1e0	-1.741e+00	0.3632	1137.0	5.93%	1744.8	5.78%
bHLH74(bHLH)/col-bHLH74-DAP-Seq(GSE60143)/Homer	DRATCACGTGAB	1e0	-1.733e+00	0.3655	612.0	3.19%	929.4	3.08%
RVE1(MYBrelated)/col-RVE1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-1.723e+00	0.3681	648.0	3.38%	985.7	3.26%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-1.722e+00	0.3681	1410.0	7.36%	2170.4	7.18%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-1.704e+00	0.3735	234.0	1.22%	347.4	1.15%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-1.702e+00	0.3737	177.0	0.92%	260.1	0.86%
AT4G27900(C2C2COlike)/col-AT4G27900-DAP-Seq(GSE60143)/Homer	TCTCVACCGTTSATT	1e0	-1.685e+00	0.3790	6.0	0.03%	6.9	0.02%
At1g13300(G2like)/col-At1g13300-DAP-Seq(GSE60143)/Homer	GAATCTWAGATTCYN	1e0	-1.660e+00	0.3871	9.0	0.05%	10.5	0.03%
GT1(Trihelix)/col-GT1-DAP-Seq(GSE60143)/Homer	TTAACCATGGTTAAD	1e0	-1.660e+00	0.3871	9.0	0.05%	10.1	0.03%
WRKY31(WRKY)/colamp-WRKY31-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWK	1e0	-1.657e+00	0.3873	541.0	2.82%	821.0	2.72%
AT2G28920(ND)/col-AT2G28920-DAP-Seq(GSE60143)/Homer	WAGATATTTWTW	1e0	-1.656e+00	0.3873	298.0	1.55%	446.9	1.48%
WRKY71(WRKY)/col-WRKY71-DAP-Seq(GSE60143)/Homer	CKTTGACYWW	1e0	-1.651e+00	0.3881	579.0	3.02%	880.3	2.91%
NUC(C2H2)/col-NUC-DAP-Seq(GSE60143)/Homer	HAVAAAACGACAAAA	1e0	-1.630e+00	0.3954	94.0	0.49%	135.4	0.45%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.612e+00	0.4018	28.0	0.15%	37.3	0.12%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-1.610e+00	0.4018	248.0	1.29%	370.8	1.23%
WRKY18(WRKY)/col-WRKY18-DAP-Seq(GSE60143)/Homer	NNNTTGACYWNNNNN	1e0	-1.610e+00	0.4018	1354.0	7.06%	2087.4	6.91%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-1.595e+00	0.4058	136.0	0.71%	199.2	0.66%
bZIP68(bZIP)/col-bZIP68-DAP-Seq(GSE60143)/Homer	WGCCACGTGK	1e0	-1.585e+00	0.4089	585.0	3.05%	891.9	2.95%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-1.563e+00	0.4171	781.0	4.08%	1196.3	3.96%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-1.558e+00	0.4184	600.0	3.13%	915.9	3.03%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-1.557e+00	0.4184	36.0	0.19%	49.2	0.16%
GATA15(C2C2gata)/col-GATA15-DAP-Seq(GSE60143)/Homer	KATGATCA	1e0	-1.534e+00	0.4268	1507.0	7.86%	2329.5	7.71%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-1.528e+00	0.4286	8.0	0.04%	9.2	0.03%
MYB107(MYB)/col-MYB107-DAP-Seq(GSE60143)/Homer	RGTWGGTRRR	1e0	-1.519e+00	0.4312	2015.0	10.51%	3124.2	10.34%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-1.505e+00	0.4363	648.0	3.38%	991.4	3.28%
bHLH80(bHLH)/col-bHLH80-DAP-Seq(GSE60143)/Homer	NNNNDCAASTTGHNN	1e0	-1.504e+00	0.4363	1018.0	5.31%	1568.0	5.19%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-1.484e+00	0.4439	1560.0	8.14%	2414.3	7.99%
SPL11(SBP)/col100-SPL11-DAP-Seq(GSE60143)/Homer	YTGTACTTBH	1e0	-1.475e+00	0.4469	975.0	5.09%	1501.4	4.97%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.458e+00	0.4537	176.0	0.92%	262.4	0.87%
IDD2(C2H2)/colamp-IDD2-DAP-Seq(GSE60143)/Homer	HAVAAAAMGACAAAA	1e0	-1.437e+00	0.4623	134.0	0.70%	198.5	0.66%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-1.433e+00	0.4633	761.0	3.97%	1169.6	3.87%
WRKY28(WRKY)/col-WRKY28-DAP-Seq(GSE60143)/Homer	BGTTGACTWH	1e0	-1.426e+00	0.4652	1095.0	5.71%	1690.2	5.59%
WRKY6(WRKY)/colamp-WRKY6-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWD	1e0	-1.404e+00	0.4745	675.0	3.52%	1036.9	3.43%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.373e+00	0.4888	2937.0	15.32%	4577.9	15.15%
AT3G25990(Trihelix)/colamp-AT3G25990-DAP-Seq(GSE60143)/Homer	TTAACCATAG	1e0	-1.371e+00	0.4888	786.0	4.10%	1210.4	4.01%
At5g52660(MYBrelated)/colamp-At5g52660-DAP-Seq(GSE60143)/Homer	HAAAAATATCTW	1e0	-1.362e+00	0.4922	471.0	2.46%	720.0	2.38%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.335e+00	0.5042	105.0	0.55%	155.8	0.52%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-1.313e+00	0.5144	74.0	0.39%	108.8	0.36%
AT1G24250(Orphan)/col-AT1G24250-DAP-Seq(GSE60143)/Homer	KTDGTTGGTDGTTGG	1e0	-1.290e+00	0.5256	332.0	1.73%	506.2	1.68%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-1.288e+00	0.5256	1367.0	7.13%	2121.3	7.02%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-1.285e+00	0.5259	58.0	0.30%	84.8	0.28%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-1.284e+00	0.5259	22.0	0.11%	30.8	0.10%
WRKY42(WRKY)/colamp-WRKY42-DAP-Seq(GSE60143)/Homer	NAAAGTCAACGN	1e0	-1.276e+00	0.5283	266.0	1.39%	404.9	1.34%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-1.259e+00	0.5365	545.0	2.84%	838.1	2.77%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-1.251e+00	0.5395	334.0	1.74%	510.3	1.69%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-1.248e+00	0.5400	6.0	0.03%	7.3	0.02%
ATHB5(HB)/colamp-ATHB5-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-1.241e+00	0.5428	1103.0	5.76%	1710.3	5.66%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-1.239e+00	0.5429	290.0	1.51%	442.8	1.47%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e0	-1.234e+00	0.5442	3561.0	18.58%	5566.5	18.43%
WRKY20(WRKY)/col-WRKY20-DAP-Seq(GSE60143)/Homer	CKTTGACYWD	1e0	-1.232e+00	0.5444	599.0	3.13%	923.5	3.06%
SPL9(SBP)/colamp-SPL9-DAP-Seq(GSE60143)/Homer	BTGTACTT	1e0	-1.228e+00	0.5453	3660.0	19.10%	5722.8	18.94%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-1.226e+00	0.5457	3094.0	16.14%	4833.1	16.00%
WRKY14(WRKY)/colamp-WRKY14-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTN	1e0	-1.217e+00	0.5492	356.0	1.86%	545.5	1.81%
VRN1(ABI3VP1)/col-VRN1-DAP-Seq(GSE60143)/Homer	TTTTTTTTTT	1e0	-1.214e+00	0.5501	3.0	0.02%	3.2	0.01%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e0	-1.175e+00	0.5705	408.0	2.13%	627.8	2.08%
CCA(Myb)/Arabidopsis-CCA.GFP-ChIP-Seq(GSE70533)/Homer	AGATATYTTT	1e0	-1.166e+00	0.5748	922.0	4.81%	1430.5	4.74%
AT1G44830(AP2EREBP)/col-AT1G44830-DAP-Seq(GSE60143)/Homer	NCCACCGACA	1e0	-1.162e+00	0.5756	842.0	4.39%	1305.0	4.32%
EIN3(EIL)/col-EIN3-DAP-Seq(GSE60143)/Homer	ARATTCAATGWATYT	1e0	-1.148e+00	0.5829	141.0	0.74%	213.5	0.71%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-1.144e+00	0.5838	212.0	1.11%	323.5	1.07%
WRKY55(WRKY)/col-WRKY55-DAP-Seq(GSE60143)/Homer	NCGTTGACTT	1e0	-1.141e+00	0.5843	922.0	4.81%	1431.4	4.74%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e0	-1.138e+00	0.5848	248.0	1.29%	379.2	1.26%
AT5G22990(C2H2)/col-AT5G22990-DAP-Seq(GSE60143)/Homer	WCGAHDTCGWHN	1e0	-1.119e+00	0.5949	131.0	0.68%	198.2	0.66%
AT5G59990(C2C2COlike)/colamp-AT5G59990-DAP-Seq(GSE60143)/Homer	TCTCAACCGTTCATT	1e0	-1.115e+00	0.5965	24.0	0.13%	34.8	0.12%
SeqBias: CG-repeat	CGCGCGCGCG	1e0	-1.114e+00	0.5965	6950.0	36.26%	10908.6	36.11%
COG1(C2C2dof)/col-COG1-DAP-Seq(GSE60143)/Homer	DAAAAAGTGA	1e0	-1.106e+00	0.5993	1958.0	10.22%	3057.7	10.12%
SMB(NAC)/colamp-SMB-DAP-Seq(GSE60143)/Homer	CTTVNNNNDBAAGHW	1e0	-1.094e+00	0.6055	1095.0	5.71%	1704.8	5.64%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-1.090e+00	0.6065	300.0	1.57%	461.9	1.53%
WRKY29(WRKY)/colamp-WRKY29-DAP-Seq(GSE60143)/Homer	MGTTGACTTT	1e0	-1.067e+00	0.6195	837.0	4.37%	1301.8	4.31%
At4g38000(C2C2dof)/col-At4g38000-DAP-Seq(GSE60143)/Homer	WWWTWACTTTTT	1e0	-1.059e+00	0.6230	1437.0	7.50%	2242.6	7.42%
At1g49010(MYBrelated)/col-At1g49010-DAP-Seq(GSE60143)/Homer	RGATAASNTT	1e0	-1.056e+00	0.6241	2261.0	11.80%	3536.9	11.71%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-1.055e+00	0.6241	63.0	0.33%	94.5	0.31%
IDD4(C2H2)/col-IDD4-DAP-Seq(GSE60143)/Homer	TTTGTCTTTWTB	1e0	-1.052e+00	0.6243	1014.0	5.29%	1579.6	5.23%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.048e+00	0.6256	673.0	3.51%	1045.2	3.46%
ANL2(HB)/col-ANL2-DAP-Seq(GSE60143)/Homer	CATTAATTGC	1e0	-1.047e+00	0.6256	749.0	3.91%	1164.4	3.85%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e0	-1.017e+00	0.6423	1064.0	5.55%	1659.5	5.49%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.007e+00	0.6478	223.0	1.16%	344.0	1.14%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-9.918e-01	0.6564	535.0	2.79%	831.6	2.75%
CDM1(C3H)/colamp-CDM1-DAP-Seq(GSE60143)/Homer	CCGAWAWTWTCGGAN	1e0	-9.850e-01	0.6596	136.0	0.71%	208.5	0.69%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e0	-9.843e-01	0.6596	1428.0	7.45%	2232.6	7.39%
MYB61(MYB)/colamp-MYB61-DAP-Seq(GSE60143)/Homer	HCYACCTACC	1e0	-9.758e-01	0.6631	1886.0	9.84%	2952.8	9.77%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-9.740e-01	0.6631	742.0	3.87%	1157.0	3.83%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e0	-9.631e-01	0.6690	1105.0	5.77%	1726.8	5.72%
SND2(NAC)/colamp-SND2-DAP-Seq(GSE60143)/Homer	CTTVWNNNWBAAGNW	1e0	-9.576e-01	0.6715	651.0	3.40%	1014.6	3.36%
CBF2(AP2EREBP)/colamp-CBF2-DAP-Seq(GSE60143)/Homer	YBRCCGACATNNNNN	1e0	-9.477e-01	0.6769	682.0	3.56%	1063.1	3.52%
WRKY22(WRKY)/colamp-WRKY22-DAP-Seq(GSE60143)/Homer	WWAAAGTCAACK	1e0	-9.410e-01	0.6802	463.0	2.42%	720.2	2.38%
ZIM(C2C2gata)/col-ZIM-DAP-Seq(GSE60143)/Homer	ATCSRACGGTYRAGA	1e0	-9.348e-01	0.6831	14.0	0.07%	20.7	0.07%
AIL7(AP2EREBP)/colamp-AIL7-DAP-Seq(GSE60143)/Homer	KCACRAWTYYCGAGG	1e0	-9.345e-01	0.6831	512.0	2.67%	797.1	2.64%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-9.334e-01	0.6831	869.0	4.53%	1357.9	4.49%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-9.267e-01	0.6848	91.0	0.47%	139.1	0.46%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-9.249e-01	0.6848	2247.0	11.72%	3523.6	11.66%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-9.239e-01	0.6848	10.0	0.05%	14.9	0.05%
bZIP28(bZIP)/col-bZIP28-DAP-Seq(GSE60143)/Homer	TGCCACGTSABH	1e0	-9.231e-01	0.6848	439.0	2.29%	683.9	2.26%
dof42(C2C2dof)/col-dof42-DAP-Seq(GSE60143)/Homer	AAAAAGGC	1e0	-9.135e-01	0.6887	820.0	4.28%	1281.3	4.24%
ATHB33(ZFHD)/col-ATHB33-DAP-Seq(GSE60143)/Homer	NGTRATTAAK	1e0	-9.120e-01	0.6887	1835.0	9.57%	2876.9	9.52%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-9.114e-01	0.6887	595.0	3.10%	928.1	3.07%
bHLH130(bHLH)/col-bHLH130-DAP-Seq(GSE60143)/Homer	GCAACTTG	1e0	-9.004e-01	0.6939	740.0	3.86%	1156.2	3.83%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-8.879e-01	0.7013	2741.0	14.30%	4303.9	14.25%
AtHB32(ZFHD)/col200-AtHB32-DAP-Seq(GSE60143)/Homer	CGAATTAT	1e0	-8.775e-01	0.7074	1597.0	8.33%	2504.3	8.29%
WRKY24(WRKY)/colamp-WRKY24-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e0	-8.726e-01	0.7095	680.0	3.55%	1063.9	3.52%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-8.677e-01	0.7117	249.0	1.30%	387.8	1.28%
PIF7(bHLH)/col-PIF7-DAP-Seq(GSE60143)/Homer	CCACGTGGNH	1e0	-8.589e-01	0.7167	465.0	2.43%	727.0	2.41%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-8.564e-01	0.7171	2402.0	12.53%	3772.8	12.49%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-8.493e-01	0.7196	71.0	0.37%	109.6	0.36%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-8.493e-01	0.7196	71.0	0.37%	109.6	0.36%
HSF7(HSF)/colamp-HSF7-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-8.492e-01	0.7196	174.0	0.91%	270.6	0.90%
HSFC1(HSF)/col-HSFC1-DAP-Seq(GSE60143)/Homer	HTTCTAGAADCTTCT	1e0	-8.492e-01	0.7196	174.0	0.91%	270.2	0.89%
HSF21(HSF)/col-HSF21-DAP-Seq(GSE60143)/Homer	CTTCTAGAAGMTTYW	1e0	-8.273e-01	0.7316	74.0	0.39%	114.8	0.38%
ANAC071(NAC)/col-ANAC071-DAP-Seq(GSE60143)/Homer	DNCKTNDNNNHNAAG	1e0	-8.180e-01	0.7371	978.0	5.10%	1534.5	5.08%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-8.125e-01	0.7398	434.0	2.26%	679.6	2.25%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-8.023e-01	0.7461	202.0	1.05%	315.2	1.04%
TCP3(TCP)/colamp-TCP3-DAP-Seq(GSE60143)/Homer	WGTGGTCCCAAHWWW	1e0	-7.894e-01	0.7544	233.0	1.22%	364.0	1.21%
ATHB6(Homeobox)/Arabidopsis-HB6-ChIP-Seq(GSE80564)/Homer	CAATNATTBN	1e0	-7.894e-01	0.7544	848.0	4.42%	1331.8	4.41%
WRKY11(WRKY)/col-WRKY11-DAP-Seq(GSE60143)/Homer	SCGTTGACTTTN	1e0	-7.853e-01	0.7548	87.0	0.45%	135.9	0.45%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-7.834e-01	0.7549	1027.0	5.36%	1613.1	5.34%
At5g58900(MYBrelated)/colamp-At5g58900-DAP-Seq(GSE60143)/Homer	WWWTYTTATCTWWWW	1e0	-7.830e-01	0.7549	1640.0	8.56%	2578.8	8.54%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-7.802e-01	0.7549	828.0	4.32%	1300.5	4.30%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-7.781e-01	0.7549	1131.0	5.90%	1777.7	5.88%
AT2G01818(PLATZ)/col-AT2G01818-DAP-Seq(GSE60143)/Homer	TCTAGAABSTTC	1e0	-7.774e-01	0.7549	136.0	0.71%	212.7	0.70%
DDF1(AP2EREBP)/col-DDF1-DAP-Seq(GSE60143)/Homer	GCCGACAT	1e0	-7.707e-01	0.7577	611.0	3.19%	959.4	3.18%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-7.577e-01	0.7662	207.0	1.08%	324.2	1.07%
REM16(ABI3VP1)/col-REM16-DAP-Seq(GSE60143)/Homer	DTTTTTSCCGSMAAA	1e0	-7.556e-01	0.7666	1.0	0.01%	0.0	0.00%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-7.510e-01	0.7687	163.0	0.85%	255.4	0.85%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-7.449e-01	0.7721	964.0	5.03%	1516.7	5.02%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e0	-7.434e-01	0.7721	84.0	0.44%	131.0	0.43%
AT5G60130(ABI3VP1)/col-AT5G60130-DAP-Seq(GSE60143)/Homer	WTTYTAAGVAAA	1e0	-7.398e-01	0.7733	2573.0	13.43%	4051.3	13.41%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-7.370e-01	0.7741	4358.0	22.74%	6864.4	22.72%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-7.368e-01	0.7741	2781.0	14.51%	4379.1	14.50%
MYB113(MYB)/col-MYB113-DAP-Seq(GSE60143)/Homer	HNDAWTCMGTTAYWN	1e0	-7.355e-01	0.7741	690.0	3.60%	1085.3	3.59%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-7.296e-01	0.7757	190.0	0.99%	298.6	0.99%
VND2(NAC)/col-VND2-DAP-Seq(GSE60143)/Homer	DNCKTNNNNNNNAAG	1e0	-7.292e-01	0.7757	1065.0	5.56%	1676.7	5.55%
WRKY45(WRKY)/col-WRKY45-DAP-Seq(GSE60143)/Homer	HNNNKTTGACTWWNH	1e0	-7.256e-01	0.7761	303.0	1.58%	476.7	1.58%
GBF5(bZIP)/colamp-GBF5-DAP-Seq(GSE60143)/Homer	WKNWSACGTGGCAWN	1e0	-7.246e-01	0.7761	423.0	2.21%	665.5	2.20%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-7.228e-01	0.7761	562.0	2.93%	884.0	2.93%
IDD5(C2H2)/colamp-IDD5-DAP-Seq(GSE60143)/Homer	TTTTGTCTTTTTBTK	1e0	-7.130e-01	0.7819	801.0	4.18%	1261.0	4.17%
ERF38(AP2EREBP)/col-ERF38-DAP-Seq(GSE60143)/Homer	CACCGACA	1e0	-7.086e-01	0.7840	877.0	4.58%	1381.7	4.57%
WRKY65(WRKY)/colamp-WRKY65-DAP-Seq(GSE60143)/Homer	AWWWAGTCAACG	1e0	-7.038e-01	0.7864	333.0	1.74%	524.2	1.74%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-7.013e-01	0.7871	3341.0	17.43%	5265.9	17.43%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-6.992e-01	0.7873	1008.0	5.26%	1588.0	5.26%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-6.961e-01	0.7884	2993.0	15.62%	4717.8	15.62%
VND4(NAC)/colamp-VND4-DAP-Seq(GSE60143)/Homer	WRCTTGWANWWCAAG	1e0	-6.933e-01	0.7892	787.0	4.11%	1240.6	4.11%
AGL95(ND)/col-AGL95-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-6.867e-01	0.7932	84.0	0.44%	132.6	0.44%
At5g22890(C2H2)/col-At5g22890-DAP-Seq(GSE60143)/Homer	NSAGGTKWTATCTGD	1e0	-6.857e-01	0.7932	32.0	0.17%	50.1	0.17%
bHLH122(bHLH)/col100-bHLH122-DAP-Seq(GSE60143)/Homer	NDDCAASTTGHHNWW	1e0	-6.823e-01	0.7939	864.0	4.51%	1362.0	4.51%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-6.808e-01	0.7939	1398.0	7.29%	2204.8	7.30%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-6.792e-01	0.7939	108.0	0.56%	170.6	0.56%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-6.771e-01	0.7940	366.0	1.91%	577.9	1.91%
TSO1(CPP)/col-TSO1-DAP-Seq(GSE60143)/Homer	RAATTTRAAW	1e0	-6.740e-01	0.7951	113.0	0.59%	178.9	0.59%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-6.725e-01	0.7951	49.0	0.26%	77.4	0.26%
WRKY3(WRKY)/col-WRKY3-DAP-Seq(GSE60143)/Homer	NCKTTGACYDDN	1e0	-6.650e-01	0.7996	476.0	2.48%	751.7	2.49%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-6.549e-01	0.8064	2048.0	10.69%	3231.3	10.70%
VND1(NAC)/col-VND1-DAP-Seq(GSE60143)/Homer	CTTRWDNHWYAAGYW	1e0	-6.400e-01	0.8171	877.0	4.58%	1385.9	4.59%
PTF1(TCP)/colamp-PTF1-DAP-Seq(GSE60143)/Homer	RDDGGGACCACA	1e0	-6.365e-01	0.8186	103.0	0.54%	163.5	0.54%
 Ik-1	NHTTGGGAATRCC	1e0	-6.344e-01	0.8189	19165.0	100.00%	30210.2	100.00%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-6.343e-01	0.8189	170.0	0.89%	269.3	0.89%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-6.309e-01	0.8191	132.0	0.69%	209.0	0.69%
WRKY26(WRKY)/colamp-WRKY26-DAP-Seq(GSE60143)/Homer	CGTTGACTWDKN	1e0	-6.280e-01	0.8201	411.0	2.14%	650.6	2.15%
HSFB3(HSF)/colamp-HSFB3-DAP-Seq(GSE60143)/Homer	TTCTAGAAGMTTHTW	1e0	-6.246e-01	0.8214	41.0	0.21%	65.1	0.22%
ABF1(bZIP)/Arabidopsis-ABF1-ChIP-Seq(GSE80564)/Homer	CACGTGGC	1e0	-6.228e-01	0.8216	1908.0	9.96%	3013.6	9.98%
ATHB7(Homeobox)/col-ATHB7-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-6.089e-01	0.8317	758.0	3.96%	1199.6	3.97%
ARF2(ARF)/col-ARF2-DAP-Seq(GSE60143)/Homer	TTGTCGGMWN	1e0	-6.032e-01	0.8351	4329.0	22.59%	6834.3	22.62%
LOB(LOBAS2)/col-LOB-DAP-Seq(GSE60143)/Homer	CGCCGKAWWTTHCGS	1e0	-6.026e-01	0.8351	892.0	4.65%	1411.7	4.67%
O2(bZIP)/Corn-O2-ChIP-Seq(GSE63991)/Homer	GCTGACGTGGCA	1e0	-5.857e-01	0.8470	267.0	1.39%	424.4	1.40%
ATHB13(Homeobox)/col-ATHB13-DAP-Seq(GSE60143)/Homer	CAATAATT	1e0	-5.852e-01	0.8470	1363.0	7.11%	2156.7	7.14%
MYB94(MYB)/col-MYB94-DAP-Seq(GSE60143)/Homer	WGGTRGTTGGKA	1e0	-5.659e-01	0.8611	396.0	2.07%	629.6	2.08%
ANAC016(NAC)/col-ANAC016-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAMG	1e0	-5.656e-01	0.8611	974.0	5.08%	1543.9	5.11%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-5.568e-01	0.8661	603.0	3.15%	957.9	3.17%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-5.522e-01	0.8687	26.0	0.14%	42.5	0.14%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-5.440e-01	0.8744	1659.0	8.66%	2627.2	8.70%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	-5.430e-01	0.8744	8.0	0.04%	13.8	0.05%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e0	-5.407e-01	0.8745	1455.0	7.59%	2305.9	7.63%
IDD7(C2H2)/col-IDD7-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTN	1e0	-5.392e-01	0.8745	423.0	2.21%	673.7	2.23%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-5.390e-01	0.8745	167.0	0.87%	267.0	0.88%
HDG7(HB)/col-HDG7-DAP-Seq(GSE60143)/Homer	WGCATTTAATGC	1e0	-5.330e-01	0.8770	250.0	1.30%	399.4	1.32%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-5.234e-01	0.8825	309.0	1.61%	493.7	1.63%
M1BP(Zf)/S2R+-M1BP-ChIP-Seq(GSE49842)/Homer	CAGTGTGACCGT	1e0	-5.234e-01	0.8825	309.0	1.61%	493.4	1.63%
CRC(C2C2YABBY)/col-CRC-DAP-Seq(GSE60143)/Homer	TWATSATA	1e0	-5.196e-01	0.8844	1259.0	6.57%	1997.9	6.61%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-5.114e-01	0.8903	448.0	2.34%	714.7	2.37%
HAT5(Homeobox)/colamp-HAT5-DAP-Seq(GSE60143)/Homer	DCAATWATTG	1e0	-5.083e-01	0.8916	162.0	0.85%	260.2	0.86%
DEAR5(AP2EREBP)/col-DEAR5-DAP-Seq(GSE60143)/Homer	NDWTGTCGGTGRWDN	1e0	-5.057e-01	0.8925	272.0	1.42%	436.0	1.44%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-5.005e-01	0.8958	3529.0	18.41%	5585.2	18.49%
GBF6(bZIP)/colamp-GBF6-DAP-Seq(GSE60143)/Homer	WWTGMCACGTCABCW	1e0	-4.988e-01	0.8958	297.0	1.55%	475.6	1.57%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-4.977e-01	0.8958	6.0	0.03%	10.9	0.04%
AGL15(MADS)/col-AGL15-DAP-Seq(GSE60143)/Homer	TTTCCHWATWDGGAA	1e0	-4.976e-01	0.8958	153.0	0.80%	246.8	0.82%
ATHB6(Homeobox)/col-ATHB6-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-4.928e-01	0.8969	1427.0	7.45%	2265.5	7.50%
TBP3(MYBrelated)/col-TBP3-DAP-Seq(GSE60143)/Homer	VYTAGGGCAN	1e0	-4.925e-01	0.8969	754.0	3.93%	1200.3	3.97%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-4.868e-01	0.8994	393.0	2.05%	628.5	2.08%
VND3(NAC)/colamp-VND3-DAP-Seq(GSE60143)/Homer	TRCTTGWDNHWCAAG	1e0	-4.863e-01	0.8994	743.0	3.88%	1183.7	3.92%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-4.808e-01	0.9020	333.0	1.74%	533.9	1.77%
AT1G77200(AP2EREBP)/colamp-AT1G77200-DAP-Seq(GSE60143)/Homer	ACCGACAHWD	1e0	-4.714e-01	0.9091	1257.0	6.56%	1998.3	6.61%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-4.686e-01	0.9102	118.0	0.62%	191.7	0.63%
AT3G58630(Trihelix)/col-AT3G58630-DAP-Seq(GSE60143)/Homer	TCTCCGGCGA	1e0	-4.673e-01	0.9102	410.0	2.14%	656.9	2.17%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e0	-4.640e-01	0.9115	173.0	0.90%	279.6	0.93%
CUC2(NAC)/colamp-CUC2-DAP-Seq(GSE60143)/Homer	TRCKTGTNNNWCAMG	1e0	-4.620e-01	0.9119	362.0	1.89%	580.9	1.92%
OBP4(C2C2dof)/col-OBP4-DAP-Seq(GSE60143)/Homer	WTTHACTTTTTB	1e0	-4.602e-01	0.9122	1841.0	9.61%	2923.5	9.68%
HSFA6B(HSF)/colamp-HSFA6B-DAP-Seq(GSE60143)/Homer	NTTCTAGAANHTTCT	1e0	-4.577e-01	0.9129	472.0	2.46%	755.9	2.50%
AT3G09735(S1Falike)/col-AT3G09735-DAP-Seq(GSE60143)/Homer	TTCTAGAANMTTCTA	1e0	-4.564e-01	0.9129	370.0	1.93%	593.6	1.97%
HSFA1E(HSF)/col-HSFA1E-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-4.528e-01	0.9146	66.0	0.34%	108.7	0.36%
bZIP53(bZIP)/colamp-bZIP53-DAP-Seq(GSE60143)/Homer	NDNHSACGTGKMNNN	1e0	-4.526e-01	0.9146	497.0	2.59%	795.0	2.63%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-4.521e-01	0.9146	611.0	3.19%	976.7	3.23%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-4.500e-01	0.9146	199.0	1.04%	321.5	1.06%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-4.424e-01	0.9185	150.0	0.78%	243.6	0.81%
GBF3(bZIP)/Arabidopsis-GBF3-ChIP-Seq(GSE80564)/Homer	TGCCACGTSAYC	1e0	-4.373e-01	0.9217	543.0	2.83%	869.4	2.88%
GT3a(Trihelix)/col-GT3a-DAP-Seq(GSE60143)/Homer	WNACACGTGTYWWAW	1e0	-4.315e-01	0.9256	233.0	1.22%	376.5	1.25%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-4.301e-01	0.9256	617.0	3.22%	987.3	3.27%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-4.198e-01	0.9337	387.0	2.02%	622.6	2.06%
BIM1(bHLH)/colamp-BIM1-DAP-Seq(GSE60143)/Homer	NNNNNNVTCACGTGM	1e0	-4.193e-01	0.9337	202.0	1.05%	327.8	1.09%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-4.159e-01	0.9344	1043.0	5.44%	1664.3	5.51%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-4.128e-01	0.9358	71.0	0.37%	117.2	0.39%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e0	-4.113e-01	0.9359	469.0	2.45%	753.3	2.49%
ANAC087(NAC)/col-ANAC087-DAP-Seq(GSE60143)/Homer	WVCKTGHNNNWCAMG	1e0	-4.089e-01	0.9367	327.0	1.71%	528.0	1.75%
TCP1(TCP)/col-TCP1-DAP-Seq(GSE60143)/Homer	GGGGGCCCMMCN	1e0	-4.018e-01	0.9419	468.0	2.44%	752.5	2.49%
ANAC092(NAC)/colamp-ANAC092-DAP-Seq(GSE60143)/Homer	WRCKTGWNNNWCAMG	1e0	-3.801e-01	0.9611	437.0	2.28%	705.0	2.33%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-3.792e-01	0.9611	120.0	0.63%	197.9	0.66%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-3.773e-01	0.9611	6797.0	35.47%	10764.7	35.63%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-3.598e-01	0.9763	64.0	0.33%	107.4	0.36%
ABF2(bZIP)/col-ABF2-DAP-Seq(GSE60143)/Homer	KGMCACGTGDCMHHH	1e0	-3.577e-01	0.9769	334.0	1.74%	541.0	1.79%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-3.554e-01	0.9777	67.0	0.35%	112.3	0.37%
bZIP16(bZIP)/colamp-bZIP16-DAP-Seq(GSE60143)/Homer	TGCCACGTGD	1e0	-3.483e-01	0.9831	457.0	2.38%	738.1	2.44%
NAC2(NAC)/colamp-NAC2-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e0	-3.462e-01	0.9837	718.0	3.75%	1154.1	3.82%
MYB62(MYB)/colamp-MYB62-DAP-Seq(GSE60143)/Homer	NTACCTAACT	1e0	-3.380e-01	0.9903	1616.0	8.43%	2581.4	8.54%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-3.335e-01	0.9933	1026.0	5.35%	1645.4	5.45%
AT3G51470(DBP)/col-AT3G51470-DAP-Seq(GSE60143)/Homer	TTWHGGTGCACC	1e0	-3.320e-01	0.9933	2439.0	12.73%	3886.6	12.87%
WRKY7(WRKY)/colamp-WRKY7-DAP-Seq(GSE60143)/Homer	AAAAGTCAACGSHWD	1e0	-3.301e-01	0.9937	1.0	0.01%	2.6	0.01%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-3.171e-01	1.0000	475.0	2.48%	769.3	2.55%
AREB3(bZIP)/col-AREB3-DAP-Seq(GSE60143)/Homer	NKGMCACGTGDCMNN	1e0	-3.016e-01	1.0000	468.0	2.44%	760.0	2.52%
AtIDD11(C2H2)/colamp-AtIDD11-DAP-Seq(GSE60143)/Homer	TTTGTCGTTT	1e0	-2.965e-01	1.0000	409.0	2.13%	665.8	2.20%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-2.953e-01	1.0000	3567.0	18.61%	5678.0	18.79%
SND3(NAC)/col-SND3-DAP-Seq(GSE60143)/Homer	CTTNHNNNDNAAGNH	1e0	-2.952e-01	1.0000	796.0	4.15%	1283.1	4.25%
AT1G69570(C2C2dof)/col-AT1G69570-DAP-Seq(GSE60143)/Homer	WAAAAGTGHH	1e0	-2.863e-01	1.0000	1684.0	8.79%	2696.7	8.93%
Knotted(Homeobox)/Corn-KN1-ChIP-Seq(GSE39161)/Homer	GAYGNGACRGGN	1e0	-2.698e-01	1.0000	2259.0	11.79%	3611.3	11.95%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-2.684e-01	1.0000	647.0	3.38%	1048.6	3.47%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-2.656e-01	1.0000	94.0	0.49%	159.6	0.53%
NTM2(NAC)/col-NTM2-DAP-Seq(GSE60143)/Homer	CTTRTNNNAYAAGBH	1e0	-2.636e-01	1.0000	561.0	2.93%	911.8	3.02%
At3g09600(MYBrelated)/colamp-At3g09600-DAP-Seq(GSE60143)/Homer	AAAATATCTT	1e0	-2.586e-01	1.0000	482.0	2.52%	785.9	2.60%
WIP5(C2H2)/colamp-WIP5-DAP-Seq(GSE60143)/Homer	TDTTCTCMAGGT	1e0	-2.545e-01	1.0000	1528.0	7.97%	2453.9	8.12%
AGL6(MADS)/col-AGL6-DAP-Seq(GSE60143)/Homer	TTWCCWWAWWDGGWA	1e0	-2.529e-01	1.0000	120.0	0.63%	202.1	0.67%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-2.528e-01	1.0000	35.0	0.18%	62.0	0.21%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-2.506e-01	1.0000	79.0	0.41%	135.4	0.45%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	-2.413e-01	1.0000	19161.0	99.98%	30205.7	99.99%
ANAC057(NAC)/colamp-ANAC057-DAP-Seq(GSE60143)/Homer	DVCKTGNNNNNCAMG	1e0	-2.412e-01	1.0000	843.0	4.40%	1364.4	4.52%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-2.375e-01	1.0000	4098.0	21.38%	6531.2	21.62%
MYB63(MYB)/col-MYB63-DAP-Seq(GSE60143)/Homer	BHYACCWACCHH	1e0	-2.313e-01	1.0000	496.0	2.59%	810.9	2.68%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-2.251e-01	1.0000	543.0	2.83%	886.1	2.93%
LMI1(HB)/colamp-LMI1-DAP-Seq(GSE60143)/Homer	AATTATTG	1e0	-2.247e-01	1.0000	868.0	4.53%	1406.5	4.66%
TCP17(TCP)/col-TCP17-DAP-Seq(GSE60143)/Homer	GTGGTCCCCA	1e0	-2.207e-01	1.0000	41.0	0.21%	73.1	0.24%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e0	-2.169e-01	1.0000	1049.0	5.47%	1696.9	5.62%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-2.105e-01	1.0000	29.0	0.15%	53.5	0.18%
ANAC075(NAC)/col-ANAC075-DAP-Seq(GSE60143)/Homer	CTTSWWNWWSAAGYT	1e0	-2.064e-01	1.0000	367.0	1.91%	605.1	2.00%
CBF4(AP2EREBP)/colamp-CBF4-DAP-Seq(GSE60143)/Homer	NRCCGACDWNNNNNN	1e0	-2.060e-01	1.0000	1006.0	5.25%	1629.5	5.39%
At2g41835(C2H2)/col-At2g41835-DAP-Seq(GSE60143)/Homer	TTTGAAAA	1e0	-1.999e-01	1.0000	588.0	3.07%	961.9	3.18%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.973e-01	1.0000	780.0	4.07%	1269.2	4.20%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-1.891e-01	1.0000	104.0	0.54%	179.8	0.60%
AT1G01250(AP2EREBP)/col-AT1G01250-DAP-Seq(GSE60143)/Homer	YCACCGACAHTW	1e0	-1.888e-01	1.0000	157.0	0.82%	266.9	0.88%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-1.888e-01	1.0000	405.0	2.11%	668.9	2.21%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e0	-1.851e-01	1.0000	2694.0	14.06%	4319.8	14.30%
ANAC053(NAC)/colamp-ANAC053-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e0	-1.842e-01	1.0000	537.0	2.80%	881.7	2.92%
ANAC058(NAC)/col-ANAC058-DAP-Seq(GSE60143)/Homer	TWCTTGTDNNACAAG	1e0	-1.838e-01	1.0000	588.0	3.07%	963.9	3.19%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-1.805e-01	1.0000	617.0	3.22%	1010.8	3.35%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-1.799e-01	1.0000	39.0	0.20%	71.5	0.24%
WRKY40(WRKY)/colamp-WRKY40-DAP-Seq(GSE60143)/Homer	AHWAGTCAAC	1e0	-1.789e-01	1.0000	400.0	2.09%	661.6	2.19%
ATHB25(ZFHD)/colamp-ATHB25-DAP-Seq(GSE60143)/Homer	TAATTAVB	1e0	-1.765e-01	1.0000	1498.0	7.82%	2419.4	8.01%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-1.736e-01	1.0000	502.0	2.62%	826.3	2.74%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-1.723e-01	1.0000	867.0	4.52%	1412.9	4.68%
ANAC013(NAC)/col-ANAC013-DAP-Seq(GSE60143)/Homer	CTTGNNNNNCAAGNA	1e0	-1.691e-01	1.0000	452.0	2.36%	746.9	2.47%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-1.658e-01	1.0000	589.0	3.07%	967.5	3.20%
GATA20(C2C2gata)/colamp-GATA20-DAP-Seq(GSE60143)/Homer	TNGATCNDNM	1e0	-1.608e-01	1.0000	2447.0	12.77%	3933.3	13.02%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e0	-1.606e-01	1.0000	361.0	1.88%	600.8	1.99%
TCP16(TCP)/colamp-TCP16-DAP-Seq(GSE60143)/Homer	GTGGDCCYNNNNNNN	1e0	-1.538e-01	1.0000	703.0	3.67%	1152.8	3.82%
LCL1(MYBrelated)/colamp-LCL1-DAP-Seq(GSE60143)/Homer	NAAAATATCTWHWWN	1e0	-1.461e-01	1.0000	149.0	0.78%	256.3	0.85%
DEAR3(AP2EREBP)/colamp-DEAR3-DAP-Seq(GSE60143)/Homer	BCACCGACAWNNNNN	1e0	-1.410e-01	1.0000	438.0	2.29%	728.0	2.41%
AT4G00250(GeBP)/col-AT4G00250-DAP-Seq(GSE60143)/Homer	WDTGGATAAKRT	1e0	-1.385e-01	1.0000	566.0	2.95%	934.4	3.09%
At1g19000(MYBrelated)/colamp-At1g19000-DAP-Seq(GSE60143)/Homer	WWTGGATAADDT	1e0	-1.360e-01	1.0000	863.0	4.50%	1413.0	4.68%
MYB83(MYB)/colamp-MYB83-DAP-Seq(GSE60143)/Homer	CACCAACCWH	1e0	-1.338e-01	1.0000	2295.0	11.97%	3699.7	12.25%
SeqBias: CA-repeat	CACACACACA	1e0	-1.296e-01	1.0000	8307.0	43.34%	13221.0	43.76%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-1.269e-01	1.0000	101.0	0.53%	178.5	0.59%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e0	-1.240e-01	1.0000	1394.0	7.27%	2266.0	7.50%
AS2(LOBAS2)/col-AS2-DAP-Seq(GSE60143)/Homer	CCGDAAWWHMCGSCG	1e0	-1.237e-01	1.0000	360.0	1.88%	603.4	2.00%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e0	-1.219e-01	1.0000	1348.0	7.03%	2192.0	7.26%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.203e-01	1.0000	713.0	3.72%	1174.3	3.89%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-1.179e-01	1.0000	72.0	0.38%	130.3	0.43%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-1.178e-01	1.0000	523.0	2.73%	868.9	2.88%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.176e-01	1.0000	426.0	2.22%	711.5	2.36%
At2g03500(G2like)/col-At2g03500-DAP-Seq(GSE60143)/Homer	WWAGAATATTCT	1e0	-1.149e-01	1.0000	194.0	1.01%	333.9	1.11%
HSF6(HSF)/col-HSF6-DAP-Seq(GSE60143)/Homer	TTYTAGAAGCTTCTA	1e0	-1.149e-01	1.0000	194.0	1.01%	334.0	1.11%
ANAC020(NAC)/col-ANAC020-DAP-Seq(GSE60143)/Homer	DVCKTGHNNNDCAAG	1e0	-1.147e-01	1.0000	667.0	3.48%	1101.6	3.65%
bZIP48(bZIP)/colamp-bZIP48-DAP-Seq(GSE60143)/Homer	DDWWKVTSACGTGGC	1e0	-1.103e-01	1.0000	445.0	2.32%	743.2	2.46%
SVP(MADS)/col-SVP-DAP-Seq(GSE60143)/Homer	ANTTWCCHAATTTGG	1e0	-1.095e-01	1.0000	498.0	2.60%	829.3	2.75%
WUS1(Homeobox)/colamp-WUS1-DAP-Seq(GSE60143)/Homer	CAWTCATTCA	1e0	-1.092e-01	1.0000	419.0	2.19%	701.8	2.32%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-1.071e-01	1.0000	1303.0	6.80%	2124.7	7.03%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e0	-1.068e-01	1.0000	310.0	1.62%	524.4	1.74%
AT5G02460(C2C2dof)/col-AT5G02460-DAP-Seq(GSE60143)/Homer	CHCCTTTT	1e0	-1.064e-01	1.0000	2827.0	14.75%	4555.3	15.08%
ANAC094(NAC)/col-ANAC094-DAP-Seq(GSE60143)/Homer	DVCGTRNNNNNYACG	1e0	-1.007e-01	1.0000	1187.0	6.19%	1941.0	6.42%
ATHB34(ZFHD)/colamp-ATHB34-DAP-Seq(GSE60143)/Homer	TRATTARS	1e0	-9.549e-02	1.0000	1077.0	5.62%	1765.4	5.84%
ATHB24(ZFHD)/colamp-ATHB24-DAP-Seq(GSE60143)/Homer	TAATTAAS	1e0	-9.486e-02	1.0000	1014.0	5.29%	1664.3	5.51%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-9.476e-02	1.0000	1113.0	5.81%	1823.6	6.04%
At2g45680(TCP)/colamp-At2g45680-DAP-Seq(GSE60143)/Homer	GTGGGNCCCACNDND	1e0	-9.430e-02	1.0000	54.0	0.28%	101.5	0.34%
WRKY17(WRKY)/colamp-WRKY17-DAP-Seq(GSE60143)/Homer	GCGTTGACTTTT	1e0	-9.180e-02	1.0000	6.0	0.03%	15.2	0.05%
ANAC096(NAC)/colamp-ANAC096-DAP-Seq(GSE60143)/Homer	TACTTGWNNNWCAAG	1e0	-8.771e-02	1.0000	698.0	3.64%	1157.1	3.83%
ATHB53(HB)/col-ATHB53-DAP-Seq(GSE60143)/Homer	CAATAATT	1e0	-8.307e-02	1.0000	586.0	3.06%	977.1	3.23%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-8.256e-02	1.0000	240.0	1.25%	413.6	1.37%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e0	-8.204e-02	1.0000	1804.0	9.41%	2934.0	9.71%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-8.165e-02	1.0000	2325.0	12.13%	3767.0	12.47%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-8.109e-02	1.0000	235.0	1.23%	406.0	1.34%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-7.998e-02	1.0000	1501.0	7.83%	2450.6	8.11%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-7.790e-02	1.0000	2981.0	15.55%	4813.6	15.93%
Replumless(BLH)/Arabidopsis-RPL.GFP-ChIP-Seq(GSE78727)/Homer	HGTCWHATCA	1e0	-7.562e-02	1.0000	1253.0	6.54%	2055.0	6.80%
ABI5(bZIP)/col-ABI5-DAP-Seq(GSE60143)/Homer	GCCACGTG	1e0	-7.533e-02	1.0000	852.0	4.45%	1409.4	4.67%
AT5G56840(MYBrelated)/colamp-AT5G56840-DAP-Seq(GSE60143)/Homer	TGGATAAGGT	1e0	-7.117e-02	1.0000	1351.0	7.05%	2213.7	7.33%
AT5G61620(MYBrelated)/colamp-AT5G61620-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e0	-7.011e-02	1.0000	1589.0	8.29%	2595.4	8.59%
PLT1(AP2EREBP)/colamp-PLT1-DAP-Seq(GSE60143)/Homer	GCACGAWTYCCGAGG	1e0	-6.754e-02	1.0000	80.0	0.42%	148.0	0.49%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-6.461e-02	1.0000	744.0	3.88%	1238.1	4.10%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-6.398e-02	1.0000	206.0	1.07%	360.2	1.19%
AT1G19040(NAC)/col-AT1G19040-DAP-Seq(GSE60143)/Homer	CTTGNDNHNCAAGYW	1e0	-6.241e-02	1.0000	99.0	0.52%	181.8	0.60%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-6.151e-02	1.0000	13.0	0.07%	30.9	0.10%
ANAC062(NAC)/colamp-ANAC062-DAP-Seq(GSE60143)/Homer	TACTTANTNWNYAAG	1e0	-5.732e-02	1.0000	361.0	1.88%	617.6	2.04%
CUC1(NAC)/col-CUC1-DAP-Seq(GSE60143)/Homer	TACTTGTNNNACAAG	1e0	-5.537e-02	1.0000	426.0	2.22%	724.9	2.40%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-5.523e-02	1.0000	3593.0	18.75%	5801.7	19.20%
FAR1(FAR1)/col-FAR1-DAP-Seq(GSE60143)/Homer	TKNNNYYCACGCGCY	1e0	-5.417e-02	1.0000	341.0	1.78%	585.0	1.94%
ATHB40(HB)/col-ATHB40-DAP-Seq(GSE60143)/Homer	HCAATWATTG	1e0	-5.366e-02	1.0000	880.0	4.59%	1462.0	4.84%
bZIP3(bZIP)/col-bZIP3-DAP-Seq(GSE60143)/Homer	DWKNHSACGTGGCAD	1e0	-5.281e-02	1.0000	668.0	3.49%	1119.1	3.70%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-5.262e-02	1.0000	1436.0	7.49%	2358.5	7.81%
ANAC028(NAC)/col-ANAC028-DAP-Seq(GSE60143)/Homer	WRCTTGNNNNNCAAG	1e0	-5.250e-02	1.0000	745.0	3.89%	1244.9	4.12%
ANAC050(NAC)/colamp-ANAC050-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAAG	1e0	-5.240e-02	1.0000	575.0	3.00%	968.9	3.21%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-5.215e-02	1.0000	2536.0	13.23%	4119.6	13.64%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-4.887e-02	1.0000	688.0	3.59%	1153.9	3.82%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-4.744e-02	1.0000	419.0	2.19%	715.8	2.37%
KAN2(G2like)/colamp-KAN2-DAP-Seq(GSE60143)/Homer	ATATTCTY	1e0	-4.588e-02	1.0000	1527.0	7.97%	2508.9	8.30%
NTM1(NAC)/col-NTM1-DAP-Seq(GSE60143)/Homer	ACTTRTARAASAAGT	1e0	-4.585e-02	1.0000	522.0	2.72%	884.5	2.93%
AT2G20400(G2like)/colamp-AT2G20400-DAP-Seq(GSE60143)/Homer	DNVGAATATTCBNHN	1e0	-4.533e-02	1.0000	108.0	0.56%	199.6	0.66%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-4.515e-02	1.0000	200.0	1.04%	354.5	1.17%
At1g69690(TCP)/colamp-At1g69690-DAP-Seq(GSE60143)/Homer	NHGTGGGGCCCACHW	1e0	-4.391e-02	1.0000	210.0	1.10%	372.0	1.23%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-4.334e-02	1.0000	434.0	2.26%	741.3	2.45%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-4.089e-02	1.0000	2867.0	14.96%	4656.7	15.41%
ATHB23(ZFHD)/col-ATHB23-DAP-Seq(GSE60143)/Homer	HTAATTARNN	1e0	-4.042e-02	1.0000	1216.0	6.34%	2011.7	6.66%
ANAC103(NAC)/col-ANAC103-DAP-Seq(GSE60143)/Homer	AACTTGNWNWNCAAG	1e0	-4.025e-02	1.0000	370.0	1.93%	637.1	2.11%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-3.962e-02	1.0000	1023.0	5.34%	1700.2	5.63%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-3.861e-02	1.0000	1557.0	8.12%	2561.4	8.48%
GATA11(C2C2gata)/col-GATA11-DAP-Seq(GSE60143)/Homer	DDHYYAGATCTR	1e0	-3.560e-02	1.0000	462.0	2.41%	790.0	2.62%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-3.516e-02	1.0000	171.0	0.89%	308.9	1.02%
GATA12(C2C2gata)/col-GATA12-DAP-Seq(GSE60143)/Homer	YAGATCTRAW	1e0	-3.379e-02	1.0000	637.0	3.32%	1077.8	3.57%
HSF3(HSF)/colamp-HSF3-DAP-Seq(GSE60143)/Homer	NTTCTAGAAKCTTCT	1e0	-3.287e-02	1.0000	908.0	4.74%	1518.8	5.03%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-3.224e-02	1.0000	642.0	3.35%	1086.3	3.60%
At5g47390(MYBrelated)/col-At5g47390-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e0	-3.138e-02	1.0000	1374.0	7.17%	2272.7	7.52%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-3.060e-02	1.0000	1754.0	9.15%	2884.6	9.55%
MYB13(MYB)/col-MYB13-DAP-Seq(GSE60143)/Homer	HYCACCWACCHH	1e0	-3.029e-02	1.0000	664.0	3.46%	1123.1	3.72%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-2.804e-02	1.0000	1750.0	9.13%	2880.0	9.53%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-2.705e-02	1.0000	855.0	4.46%	1436.3	4.75%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-2.664e-02	1.0000	1467.0	7.65%	2426.7	8.03%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-2.638e-02	1.0000	1619.0	8.45%	2671.3	8.84%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-2.465e-02	1.0000	104.0	0.54%	197.4	0.65%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-2.273e-02	1.0000	1892.0	9.87%	3114.8	10.31%
AGL25(MADS)/colamp-AGL25-DAP-Seq(GSE60143)/Homer	TTTCCATWTWTGGAA	1e0	-2.201e-02	1.0000	44.0	0.23%	92.8	0.31%
BZR1(BZR)/col-BZR1-DAP-Seq(GSE60143)/Homer	NNCRCACGTGCG	1e0	-2.177e-02	1.0000	218.0	1.14%	392.8	1.30%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-2.162e-02	1.0000	160.0	0.83%	294.8	0.98%
GATA19(C2C2gata)/colamp-GATA19-DAP-Seq(GSE60143)/Homer	ATCSGATCVG	1e0	-2.073e-02	1.0000	65.0	0.34%	130.4	0.43%
ATHB21(HB)/colamp-ATHB21-DAP-Seq(GSE60143)/Homer	YCAATWAT	1e0	-2.016e-02	1.0000	492.0	2.57%	848.9	2.81%
SGR5(C2H2)/colamp-SGR5-DAP-Seq(GSE60143)/Homer	TTTGTCTTTTTT	1e0	-1.983e-02	1.0000	777.0	4.05%	1315.6	4.35%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-1.919e-02	1.0000	2981.0	15.55%	4864.5	16.10%
AT2G33550(Trihelix)/colamp-AT2G33550-DAP-Seq(GSE60143)/Homer	TTTAAGGGCAYTTTT	1e0	-1.882e-02	1.0000	2545.0	13.28%	4167.7	13.80%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e0	-1.801e-02	1.0000	1108.0	5.78%	1855.6	6.14%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-1.667e-02	1.0000	934.0	4.87%	1574.4	5.21%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.631e-02	1.0000	123.0	0.64%	233.3	0.77%
AGL13(MADS)/col-AGL13-DAP-Seq(GSE60143)/Homer	TWCCAWWTWTGGWAA	1e0	-1.609e-02	1.0000	35.0	0.18%	77.8	0.26%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-1.515e-02	1.0000	2385.0	12.44%	3917.1	12.97%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-1.459e-02	1.0000	596.0	3.11%	1024.8	3.39%
BAM8(BES1)/col-BAM8-DAP-Seq(GSE60143)/Homer	NNWSACACGTGTSWN	1e0	-1.328e-02	1.0000	218.0	1.14%	397.2	1.31%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.293e-02	1.0000	2318.0	12.09%	3814.6	12.63%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.273e-02	1.0000	2428.0	12.67%	3991.0	13.21%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-1.268e-02	1.0000	867.0	4.52%	1470.9	4.87%
At5g29000(G2like)/col-At5g29000-DAP-Seq(GSE60143)/Homer	RGAATATTCYHH	1e0	-1.182e-02	1.0000	225.0	1.17%	410.9	1.36%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e0	-1.156e-02	1.0000	495.0	2.58%	861.1	2.85%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.087e-02	1.0000	64.0	0.33%	132.6	0.44%
GATA1(C2C2gata)/colamp-GATA1-DAP-Seq(GSE60143)/Homer	DDWWYYAGATCTRRW	1e0	-1.086e-02	1.0000	368.0	1.92%	651.9	2.16%
ANAC004(NAC)/colamp-ANAC004-DAP-Seq(GSE60143)/Homer	WNCTTVYNNNRBAAG	1e0	-1.080e-02	1.0000	344.0	1.79%	611.6	2.02%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.004e-02	1.0000	632.0	3.30%	1089.9	3.61%
FUS3(ABI3VP1)/col-FUS3-DAP-Seq(GSE60143)/Homer	DNNWTNTGCATGKNN	1e0	-9.786e-03	1.0000	1683.0	8.78%	2799.3	9.27%
GATA14(C2C2gata)/col-GATA14-DAP-Seq(GSE60143)/Homer	AYCAGATCTG	1e0	-9.174e-03	1.0000	759.0	3.96%	1299.1	4.30%
TCP7(TCP)/col-TCP7-DAP-Seq(GSE60143)/Homer	GTGGGSCCCACHHNN	1e0	-8.872e-03	1.0000	716.0	3.74%	1229.6	4.07%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-8.738e-03	1.0000	251.0	1.31%	457.3	1.51%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-8.486e-03	1.0000	380.0	1.98%	674.5	2.23%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-8.252e-03	1.0000	2418.0	12.62%	3987.8	13.20%
RAV1(RAV)/colamp-RAV1-DAP-Seq(GSE60143)/Homer	TWWTTTCTGTTG	1e0	-8.045e-03	1.0000	848.0	4.42%	1447.5	4.79%
ANAC017(NAC)/colamp-ANAC017-DAP-Seq(GSE60143)/Homer	TMCTTGNNNNNCAAG	1e0	-7.644e-03	1.0000	97.0	0.51%	193.5	0.64%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-6.213e-03	1.0000	2656.0	13.86%	4377.1	14.49%
BPC6(BBRBPC)/col-BPC6-DAP-Seq(GSE60143)/Homer	YTYTCTCTCTCTCTA	1e0	-5.654e-03	1.0000	16.0	0.08%	44.9	0.15%
ANAC005(NAC)/col-ANAC005-DAP-Seq(GSE60143)/Homer	WVCTTVTWNHABAAG	1e0	-5.630e-03	1.0000	500.0	2.61%	879.5	2.91%
GATA4(C2C2gata)/col-GATA4-DAP-Seq(GSE60143)/Homer	DDWTYAGATCTR	1e0	-5.606e-03	1.0000	851.0	4.44%	1458.9	4.83%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-5.486e-03	1.0000	609.0	3.18%	1060.3	3.51%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-5.180e-03	1.0000	2995.0	15.63%	4926.4	16.31%
bZIP52(bZIP)/colamp-bZIP52-DAP-Seq(GSE60143)/Homer	NDNHCAGCTGTCANN	1e0	-5.180e-03	1.0000	2406.0	12.55%	3981.0	13.18%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e0	-5.088e-03	1.0000	432.0	2.25%	767.1	2.54%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-4.867e-03	1.0000	1102.0	5.75%	1871.8	6.20%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-4.666e-03	1.0000	291.0	1.52%	531.7	1.76%
ANAC011(NAC)/col-ANAC011-DAP-Seq(GSE60143)/Homer	TDCTTGYRNNDCAAG	1e0	-4.431e-03	1.0000	363.0	1.89%	653.6	2.16%
At1g68670(G2like)/colamp-At1g68670-DAP-Seq(GSE60143)/Homer	WNWWHNRAAGATTCT	1e0	-4.210e-03	1.0000	445.0	2.32%	791.2	2.62%
MYB49(MYB)/col-MYB49-DAP-Seq(GSE60143)/Homer	ARKTAGGTRR	1e0	-3.971e-03	1.0000	1161.0	6.06%	1971.2	6.52%
TF3A(C2H2)/col-TF3A-DAP-Seq(GSE60143)/Homer	NNDDGAGGAGGWNNN	1e0	-3.844e-03	1.0000	1971.0	10.28%	3286.1	10.88%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-3.722e-03	1.0000	85.0	0.44%	176.2	0.58%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e0	-3.708e-03	1.0000	504.0	2.63%	891.5	2.95%
At1g72010(TCP)/colamp-At1g72010-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e0	-3.695e-03	1.0000	680.0	3.55%	1183.4	3.92%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e0	-3.611e-03	1.0000	1634.0	8.53%	2742.3	9.08%
AT5G25475(ABI3VP1)/col-AT5G25475-DAP-Seq(GSE60143)/Homer	RNNRNCAAGCADNDB	1e0	-3.558e-03	1.0000	2051.0	10.70%	3417.6	11.31%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-3.535e-03	1.0000	339.0	1.77%	615.2	2.04%
PLT3(AP2EREBP)/col-PLT3-DAP-Seq(GSE60143)/Homer	GCACGNWTHYCGAGG	1e0	-3.213e-03	1.0000	54.0	0.28%	120.9	0.40%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-3.145e-03	1.0000	11.0	0.06%	35.2	0.12%
TCP20(TCP)/col-TCP20-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e0	-3.053e-03	1.0000	568.0	2.96%	1000.7	3.31%
AT1G04880(ARID)/colamp-AT1G04880-DAP-Seq(GSE60143)/Homer	AAACTATATADTATA	1e0	-2.851e-03	1.0000	65.0	0.34%	141.1	0.47%
AT3G10580(MYBrelated)/colamp-AT3G10580-DAP-Seq(GSE60143)/Homer	TACCTAACWNHW	1e0	-2.664e-03	1.0000	390.0	2.03%	704.1	2.33%
MYB4(MYB)/col200-MYB4-DAP-Seq(GSE60143)/Homer	WAGKTAGGTARR	1e0	-2.505e-03	1.0000	620.0	3.24%	1089.5	3.61%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-2.379e-03	1.0000	336.0	1.75%	614.9	2.04%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e0	-2.286e-03	1.0000	1316.0	6.87%	2234.5	7.40%
FRS9(ND)/col-FRS9-DAP-Seq(GSE60143)/Homer	RGAGAGAGAAAG	1e0	-2.149e-03	1.0000	255.0	1.33%	477.3	1.58%
MYB39(MYB)/col-MYB39-DAP-Seq(GSE60143)/Homer	WWAARKTAGGTGRAA	1e0	-1.944e-03	1.0000	123.0	0.64%	248.7	0.82%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-1.935e-03	1.0000	1047.0	5.46%	1797.8	5.95%
BPC1(BBRBPC)/colamp-BPC1-DAP-Seq(GSE60143)/Homer	GARGAGAGAGAA	1e0	-1.853e-03	1.0000	608.0	3.17%	1073.6	3.55%
bHLH34(bHLH)/colamp-bHLH34-DAP-Seq(GSE60143)/Homer	HGWGRHWGACACGTG	1e0	-1.722e-03	1.0000	505.0	2.64%	902.9	2.99%
At1g74840(MYBrelated)/col100-At1g74840-DAP-Seq(GSE60143)/Homer	YHTTATCCAWWT	1e0	-1.713e-03	1.0000	720.0	3.76%	1260.6	4.17%
At3g12730(G2like)/colamp-At3g12730-DAP-Seq(GSE60143)/Homer	AAGATTCT	1e0	-1.687e-03	1.0000	1539.0	8.03%	2603.7	8.62%
MS188(MYB)/colamp-MS188-DAP-Seq(GSE60143)/Homer	WARKTAGGTRRA	1e0	-1.463e-03	1.0000	738.0	3.85%	1292.3	4.28%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-1.394e-03	1.0000	528.0	2.76%	943.0	3.12%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-1.366e-03	1.0000	3900.0	20.35%	6414.0	21.23%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e0	-1.327e-03	1.0000	826.0	4.31%	1439.1	4.76%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-1.281e-03	1.0000	431.0	2.25%	781.1	2.59%
At5g66730(C2H2)/colamp-At5g66730-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTK	1e0	-1.116e-03	1.0000	261.0	1.36%	493.3	1.63%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e0	-1.098e-03	1.0000	417.0	2.18%	759.6	2.51%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-1.074e-03	1.0000	280.0	1.46%	526.1	1.74%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-1.027e-03	1.0000	196.0	1.02%	381.5	1.26%
bHLH18(bHLH)/col-bHLH18-DAP-Seq(GSE60143)/Homer	CACGTGTTYCACGTG	1e0	-8.630e-04	1.0000	18.0	0.09%	54.7	0.18%
MYB121(MYB)/col-MYB121-DAP-Seq(GSE60143)/Homer	YNTACCTAACWW	1e0	-7.310e-04	1.0000	299.0	1.56%	562.5	1.86%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-5.710e-04	1.0000	637.0	3.32%	1136.5	3.76%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e0	-5.470e-04	1.0000	4332.0	22.60%	7129.6	23.60%
AGL63(MADS)/col-AGL63-DAP-Seq(GSE60143)/Homer	TTCCAAWWWTGG	1e0	-5.150e-04	1.0000	879.0	4.59%	1540.2	5.10%
GATA6(C2C2gata)/col200-GATA6-DAP-Seq(GSE60143)/Homer	TAGATCTARAHH	1e0	-4.510e-04	1.0000	133.0	0.69%	275.3	0.91%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-4.110e-04	1.0000	8.0	0.04%	33.5	0.11%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-3.180e-04	1.0000	904.0	4.72%	1588.7	5.26%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-2.920e-04	1.0000	253.0	1.32%	490.6	1.62%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-2.890e-04	1.0000	729.0	3.80%	1298.2	4.30%
AT1G72740(MYBrelated)/colamp-AT1G72740-DAP-Seq(GSE60143)/Homer	NNWWAMCCTAAHWNN	1e0	-2.620e-04	1.0000	941.0	4.91%	1652.0	5.47%
At5g08330(TCP)/col-At5g08330-DAP-Seq(GSE60143)/Homer	GGRCCCAC	1e0	-2.480e-04	1.0000	810.0	4.23%	1435.8	4.75%
BOS1(MYB)/col-BOS1-DAP-Seq(GSE60143)/Homer	NNRCCTAACT	1e0	-2.370e-04	1.0000	1107.0	5.78%	1928.2	6.38%
At4g36780(BZR)/col-At4g36780-DAP-Seq(GSE60143)/Homer	NNNNNNCACGTGNNN	1e0	-1.590e-04	1.0000	563.0	2.94%	1026.8	3.40%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-1.410e-04	1.0000	465.0	2.43%	862.0	2.85%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.390e-04	1.0000	1764.0	9.20%	3015.3	9.98%
MYB27(MYB)/colamp-MYB27-DAP-Seq(GSE60143)/Homer	TACCTAACWT	1e0	-1.370e-04	1.0000	127.0	0.66%	271.8	0.90%
AT2G38300(G2like)/col-AT2G38300-DAP-Seq(GSE60143)/Homer	ADRGAATGTT	1e0	-1.230e-04	1.0000	1421.0	7.41%	2455.7	8.13%
BIM2(bHLH)/col-BIM2-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNN	1e0	-1.170e-04	1.0000	1336.0	6.97%	2316.4	7.67%
At1g78700(BZR)/col-At1g78700-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNNNNN	1e0	-1.010e-04	1.0000	601.0	3.14%	1095.4	3.63%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-7.600e-05	1.0000	447.0	2.33%	836.0	2.77%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e0	-6.500e-05	1.0000	1266.0	6.61%	2209.8	7.31%
MYB74(MYB)/colamp-MYB74-DAP-Seq(GSE60143)/Homer	YYYACCTACCWH	1e0	-6.200e-05	1.0000	575.0	3.00%	1056.8	3.50%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e0	-5.300e-05	1.0000	1797.0	9.38%	3085.7	10.21%
MYB57(MYB)/col-MYB57-DAP-Seq(GSE60143)/Homer	TTACCTAACT	1e0	-2.700e-05	1.0000	408.0	2.13%	778.7	2.58%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-2.400e-05	1.0000	1222.0	6.38%	2150.1	7.12%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-2.400e-05	1.0000	1893.0	9.88%	3255.2	10.78%
AT5G45580(G2like)/colamp-AT5G45580-DAP-Seq(GSE60143)/Homer	ADRGAATCTH	1e0	-2.200e-05	1.0000	1677.0	8.75%	2902.5	9.61%
AT1G49560(G2like)/colamp-AT1G49560-DAP-Seq(GSE60143)/Homer	GAWTCTNWDA	1e0	-1.500e-05	1.0000	1219.0	6.36%	2151.7	7.12%
At4g18890(BZR)/col-At4g18890-DAP-Seq(GSE60143)/Homer	NDBRCACGTGYR	1e0	-1.300e-05	1.0000	365.0	1.90%	710.0	2.35%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e0	-1.200e-05	1.0000	189.0	0.99%	398.4	1.32%
At3g04030(G2like)/col-At3g04030-DAP-Seq(GSE60143)/Homer	DRGAATCT	1e0	-9.000e-06	1.0000	859.0	4.48%	1557.0	5.15%
HAP3(CCAATHAP3)/col-HAP3-DAP-Seq(GSE60143)/Homer	TGATGGAW	1e0	-7.000e-06	1.0000	435.0	2.27%	836.8	2.77%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-6.000e-06	1.0000	2259.0	11.79%	3877.9	12.84%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-4.000e-06	1.0000	1125.0	5.87%	2012.6	6.66%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-3.000e-06	1.0000	2272.0	11.85%	3908.4	12.94%
At3g24120(G2like)/col-At3g24120-DAP-Seq(GSE60143)/Homer	NWWAGMATMW	1e0	-3.000e-06	1.0000	4400.0	22.96%	7357.9	24.36%
AT4G37180(G2like)/col-AT4G37180-DAP-Seq(GSE60143)/Homer	AGAATCTTNN	1e0	-2.000e-06	1.0000	1122.0	5.85%	2013.8	6.67%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-2.000e-06	1.0000	502.0	2.62%	962.1	3.18%
MYB116(MYB)/colamp-MYB116-DAP-Seq(GSE60143)/Homer	AGTTAGGCAN	1e0	-2.000e-06	1.0000	723.0	3.77%	1343.8	4.45%
ZML2(C2C2gata)/col-ZML2-DAP-Seq(GSE60143)/Homer	CATCATCATC	1e0	-1.000e-06	1.0000	187.0	0.98%	406.8	1.35%
At2g01060(G2like)/colamp-At2g01060-DAP-Seq(GSE60143)/Homer	AGATKCBNWW	1e0	-1.000e-06	1.0000	3925.0	20.48%	6606.5	21.87%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.000e-06	1.0000	2730.0	14.24%	4669.6	15.46%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-1.000e-06	1.0000	770.0	4.02%	1429.4	4.73%
At1g25550(G2like)/colamp-At1g25550-DAP-Seq(GSE60143)/Homer	NAGATTCY	1e0	-0.000e+00	1.0000	976.0	5.09%	1786.6	5.91%
AT2G40260(G2like)/colamp-AT2G40260-DAP-Seq(GSE60143)/Homer	WAAAYATTCTTT	1e0	-0.000e+00	1.0000	1659.0	8.66%	2937.4	9.72%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-0.000e+00	1.0000	1048.0	5.47%	1928.1	6.38%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-0.000e+00	1.0000	2104.0	10.98%	3695.5	12.23%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e0	-0.000e+00	1.0000	630.0	3.29%	1223.0	4.05%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	1.3	0.00%
AT4G12670(MYBrelated)/col-AT4G12670-DAP-Seq(GSE60143)/Homer	AGGGTTTAGGGTTTA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%