Information for 23-CAAAACGTCC (Motif 23)

A G T C C G T A C T G A C G T A G T C A A G T C A C T G A C G T G T A C T A G C
Reverse Opposite:
A C T G C A T G C G T A A G T C A C T G A C G T A C G T A G C T A C G T A C T G
p-value:1e-9
log p-value:-2.100e+01
Information Content per bp:1.912
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif0.30%
Number of Background Sequences with motif25.6
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets108.3 +/- 58.1bp
Average Position of motif in Background80.4 +/- 62.7bp
Strand Bias (log2 ratio + to - strand density)-1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SKO1/MA0382.1/Jaspar

Match Rank:1
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:CAAAACGTCC
CATTACGT--
 A G T C C G T A C T G A C G T A G T C A A G T C A C T G A C G T G T A C T A G C
A G T C C G T A C G A T A C G T C G T A A G T C A C T G A C G T A C G T A C G T

At1g64620(C2C2dof)/colamp-At1g64620-DAP-Seq(GSE60143)/Homer

Match Rank:2
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CAAAACGTCC
-AAAAAGTG-
 A G T C C G T A C T G A C G T A G T C A A G T C A C T G A C G T G T A C T A G C
A C G T C G T A C G T A C G T A C G T A C T G A A C T G A G C T C T A G A C G T

Pp_0229(RRM)/Physcomitrella_patens-RNCMPT00229-PBM/HughesRNA

Match Rank:3
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CAAAACGTCC
AAAAACA---
 A G T C C G T A C T G A C G T A G T C A A G T C A C T G A C G T G T A C T A G C
G T C A G T C A C G T A G T C A C G T A A G T C C G T A A C G T A C G T A C G T

Ng_0261(RRM)/Naegleria_gruberi-RNCMPT00261-PBM/HughesRNA

Match Rank:4
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CAAAACGTCC
CAAAATT---
 A G T C C G T A C T G A C G T A G T C A A G T C A C T G A C G T G T A C T A G C
A G T C C G T A C G T A C G T A C G T A G A C T A G C T A C G T A C G T A C G T

ANKHD1(KH)/Homo_sapiens-RNCMPT00002-PBM/HughesRNA

Match Rank:5
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:CAAAACGTCC
---TACGTCT
 A G T C C G T A C T G A C G T A G T C A A G T C A C T G A C G T G T A C T A G C
A C G T A C G T A C G T G C A T C G T A A G T C A C T G A C G T A G T C A C G T

Syncrip(RRM)/Xenopus_tropicalis-RNCMPT00281-PBM/HughesRNA

Match Rank:6
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CAAAACGTCC
CAAAAAG---
 A G T C C G T A C T G A C G T A G T C A A G T C A C T G A C G T G T A C T A G C
G T A C G T C A C G T A C G T A C G T A C G T A C A T G A C G T A C G T A C G T

AT5G02460(C2C2dof)/col-AT5G02460-DAP-Seq(GSE60143)/Homer

Match Rank:7
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CAAAACGTCC
-AAAAGGDG-
 A G T C C G T A C T G A C G T A G T C A A G T C A C T G A C G T G T A C T A G C
A C G T T G C A C G T A C G T A C G T A C T A G C T A G C A T G T A C G A C G T

DOF5.6/MA0983.1/Jaspar

Match Rank:8
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CAAAACGTCC
GAAAAAGT--
 A G T C C G T A C T G A C G T A G T C A A G T C A C T G A C G T G T A C T A G C
T A C G C G T A C G T A G T C A G T C A T G C A C T A G A G C T A C G T A C G T

ORB2(RRM)/Drosophila_melanogaster-RNCMPT00126-PBM/HughesRNA

Match Rank:9
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CAAAACGTCC
CCCAAAC-----
 A C G T A C G T A G T C C G T A C T G A C G T A G T C A A G T C A C T G A C G T G T A C T A G C
G T A C G T A C G T A C C G T A C G T A C G T A G T A C A C G T A C G T A C G T A C G T A C G T

Hnrnpr(RRM)/Xenopus_tropicalis-RNCMPT00289-PBM/HughesRNA

Match Rank:10
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CAAAACGTCC
AAAAAAG---
 A G T C C G T A C T G A C G T A G T C A A G T C A C T G A C G T G T A C T A G C
G T C A C G T A C G T A C G T A C G T A G T C A A C T G A C G T A C G T A C G T