Information for 5-ATWVCGNY (Motif 3)

G T C A C G A T C G A T T A C G G T A C C T A G T A C G A G T C
Reverse Opposite:
T C A G A T G C A G T C A C T G A T G C G C T A G C T A C A G T
p-value:1e-184
log p-value:-4.248e+02
Information Content per bp:1.536
Number of Target Sequences with motif3821.0
Percentage of Target Sequences with motif50.57%
Number of Background Sequences with motif14148.7
Percentage of Background Sequences with motif34.30%
Average Position of motif in Targets99.3 +/- 56.9bp
Average Position of motif in Background99.6 +/- 66.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.43
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

At5g08750(C3H)/col-At5g08750-DAP-Seq(GSE60143)/Homer

Match Rank:1
Score:0.81
Offset:-2
Orientation:forward strand
Alignment:--ATWVCGNY--
NWDTTGCGGCTR
 A C G T A C G T G T C A C G A T C G A T T A C G G T A C C T A G T A C G A G T C A C G T A C G T
C G T A C G A T C G A T G C A T C G A T T C A G A G T C A C T G C T A G A G T C A C G T C T G A

PF10_0214(RRM)/Plasmodium_falciparum-RNCMPT00240-PBM/HughesRNA

Match Rank:2
Score:0.76
Offset:0
Orientation:forward strand
Alignment:ATWVCGNY
ATTCCGA-
 G T C A C G A T C G A T T A C G G T A C C T A G T A C G A G T C
C G T A C G A T C G A T A G T C A G T C A C T G C G T A A C G T

RRTF1(AP2EREBP)/colamp-RRTF1-DAP-Seq(GSE60143)/Homer

Match Rank:3
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--ATWVCGNY--
AAATDGCGGCGG
 A C G T A C G T G T C A C G A T C G A T T A C G G T A C C T A G T A C G A G T C A C G T A C G T
G C T A C G T A C G T A G C A T C A G T C T A G A G T C A C T G A C T G A G T C A C T G T A C G

CRF10(AP2EREBP)/col100-CRF10-DAP-Seq(GSE60143)/Homer

Match Rank:4
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:ATWVCGNY---
-TDRCGGCGGH
 G T C A C G A T C G A T T A C G G T A C C T A G T A C G A G T C A C G T A C G T A C G T
A C G T C G A T C T G A C T G A A G T C A C T G T C A G A G T C T A C G A T C G G A T C

AT2G15740(C2H2)/col-AT2G15740-DAP-Seq(GSE60143)/Homer

Match Rank:5
Score:0.74
Offset:-3
Orientation:forward strand
Alignment:---ATWVCGNY-
DHNDWATCGATD
 A C G T A C G T A C G T G T C A C G A T C G A T T A C G G T A C C T A G T A C G A G T C A C G T
C G A T G A T C T A C G C T G A G C T A C G T A G C A T A G T C C T A G C G T A G C A T C G A T

ASG1/MA0275.1/Jaspar

Match Rank:6
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:ATWVCGNY
-TTCCGG-
 G T C A C G A T C G A T T A C G G T A C C T A G T A C G A G T C
A C G T C G A T A G C T A G T C A G T C A C T G C T A G A C G T

CG7903(RRM)/Drosophila_melanogaster-RNCMPT00144-PBM/HughesRNA

Match Rank:7
Score:0.74
Offset:0
Orientation:forward strand
Alignment:ATWVCGNY
NTTGCGG-
 G T C A C G A T C G A T T A C G G T A C C T A G T A C G A G T C
G A C T C G A T A C G T A C T G A G T C A C T G C T A G A C G T

ERF115(AP2EREBP)/colamp-ERF115-DAP-Seq(GSE60143)/Homer

Match Rank:8
Score:0.73
Offset:0
Orientation:forward strand
Alignment:ATWVCGNY--
WTKRCGGCGB
 G T C A C G A T C G A T T A C G G T A C C T A G T A C G A G T C A C G T A C G T
C G T A G C A T C A G T C T A G A G T C A C T G A C T G G T A C A C T G A T C G

ERT1/MA0420.1/Jaspar

Match Rank:9
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:ATWVCGNY
GTTCCGGT
 G T C A C G A T C G A T T A C G G T A C C T A G T A C G A G T C
C T A G A C G T A C G T A G T C A G T C A C T G C T A G G A C T

HAL9/MA0311.1/Jaspar

Match Rank:10
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:ATWVCGNY
-TTCCG--
 G T C A C G A T C G A T T A C G G T A C C T A G T A C G A G T C
A C G T A G C T A C G T A G T C A G T C A C T G A C G T A C G T