Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 7556)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 41325)	% of Background Sequences with Motif
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-2919	-6.722e+03	0.0000	2953.0	39.08%	789.3	1.91%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-2458	-5.662e+03	0.0000	3371.0	44.61%	1741.2	4.22%
E2FA(E2FDP)/colamp-E2FA-DAP-Seq(GSE60143)/Homer	WWTGGCGCCAWWWNN	1e-57	-1.333e+02	0.0000	580.0	7.68%	1523.7	3.69%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-52	-1.203e+02	0.0000	864.0	11.43%	2739.7	6.64%
SeqBias: CG bias	SSSSSSSSSS	1e-43	-9.910e+01	0.0000	6854.0	90.71%	35232.3	85.41%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-32	-7.501e+01	0.0000	68.0	0.90%	55.6	0.13%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-32	-7.401e+01	0.0000	795.0	10.52%	2812.3	6.82%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-31	-7.348e+01	0.0000	233.0	3.08%	526.1	1.28%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-30	-7.024e+01	0.0000	2050.0	27.13%	8870.1	21.50%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-30	-7.005e+01	0.0000	1063.0	14.07%	4074.1	9.88%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-30	-6.921e+01	0.0000	123.0	1.63%	193.7	0.47%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-29	-6.856e+01	0.0000	140.0	1.85%	243.0	0.59%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e-29	-6.802e+01	0.0000	1688.0	22.34%	7103.2	17.22%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-29	-6.798e+01	0.0000	650.0	8.60%	2228.4	5.40%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-28	-6.549e+01	0.0000	676.0	8.95%	2364.9	5.73%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-27	-6.268e+01	0.0000	1357.0	17.96%	5565.9	13.49%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-26	-6.204e+01	0.0000	1243.0	16.45%	5026.0	12.18%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-25	-5.817e+01	0.0000	958.0	12.68%	3725.6	9.03%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-24	-5.657e+01	0.0000	376.0	4.98%	1156.9	2.80%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-23	-5.447e+01	0.0000	571.0	7.56%	2003.3	4.86%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-21	-4.997e+01	0.0000	1348.0	17.84%	5713.8	13.85%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-21	-4.852e+01	0.0000	659.0	8.72%	2457.4	5.96%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-20	-4.815e+01	0.0000	392.0	5.19%	1284.2	3.11%
At1g75490(AP2EREBP)/colamp-At1g75490-DAP-Seq(GSE60143)/Homer	CACCGMCT	1e-19	-4.542e+01	0.0000	2749.0	36.38%	12954.9	31.40%
At5g18450(AP2EREBP)/col-At5g18450-DAP-Seq(GSE60143)/Homer	CACCGCTT	1e-19	-4.425e+01	0.0000	3393.0	44.90%	16402.4	39.76%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-18	-4.339e+01	0.0000	371.0	4.91%	1233.0	2.99%
DEL2(E2FDP)/col-DEL2-DAP-Seq(GSE60143)/Homer	WTTTCSCGCC	1e-18	-4.234e+01	0.0000	524.0	6.93%	1913.3	4.64%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-17	-4.082e+01	0.0000	714.0	9.45%	2802.3	6.79%
DREB19(AP2EREBP)/colamp-DREB19-DAP-Seq(GSE60143)/Homer	AATGTCGGTK	1e-17	-4.077e+01	0.0000	716.0	9.48%	2812.9	6.82%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-17	-4.065e+01	0.0000	118.0	1.56%	257.9	0.63%
SeqBias: A/T bias	WWWWWWWWWW	1e-17	-3.969e+01	0.0000	3678.0	48.68%	18056.5	43.77%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-16	-3.802e+01	0.0000	958.0	12.68%	4004.6	9.71%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-16	-3.713e+01	0.0000	293.0	3.88%	953.5	2.31%
SeqBias: polyA-repeat	AAAAAAAAAA	1e-15	-3.644e+01	0.0000	6138.0	81.23%	31919.4	77.38%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-15	-3.557e+01	0.0000	623.0	8.25%	2445.1	5.93%
ERF105(AP2EREBP)/colamp-ERF105-DAP-Seq(GSE60143)/Homer	TGGCGGCT	1e-15	-3.513e+01	0.0000	3381.0	44.75%	16581.4	40.19%
At2g33710(AP2EREBP)/colamp-At2g33710-DAP-Seq(GSE60143)/Homer	WTKGCGGCKR	1e-15	-3.464e+01	0.0000	3516.0	46.53%	17322.3	41.99%
NAM(NAC)/col-NAM-DAP-Seq(GSE60143)/Homer	RGTTRCGTRW	1e-14	-3.439e+01	0.0000	1006.0	13.31%	4298.6	10.42%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e-14	-3.350e+01	0.0000	6278.0	83.09%	32810.4	79.54%
AT1G71450(AP2EREBP)/col-AT1G71450-DAP-Seq(GSE60143)/Homer	DHDWTGTCGGTG	1e-14	-3.232e+01	0.0000	2512.0	33.25%	12038.6	29.18%
ABR1(AP2EREBP)/colamp-ABR1-DAP-Seq(GSE60143)/Homer	AAATGGCGGCGG	1e-13	-3.180e+01	0.0000	2237.0	29.61%	10611.6	25.72%
NAP(NAC)/col-NAP-DAP-Seq(GSE60143)/Homer	ARGTTACGTRTN	1e-13	-3.141e+01	0.0000	620.0	8.21%	2487.7	6.03%
ERF7(AP2EREBP)/col-ERF7-DAP-Seq(GSE60143)/Homer	ATGRCGGCGG	1e-13	-3.094e+01	0.0000	2827.0	37.41%	13742.4	33.31%
AT2G15740(C2H2)/col-AT2G15740-DAP-Seq(GSE60143)/Homer	DHNDWATCGATD	1e-13	-3.055e+01	0.0000	421.0	5.57%	1576.7	3.82%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-13	-3.051e+01	0.0000	1587.0	21.00%	7287.8	17.67%
ERF13(AP2EREBP)/colamp-ERF13-DAP-Seq(GSE60143)/Homer	TYAGCCGCCATT	1e-12	-2.965e+01	0.0000	2449.0	32.41%	11781.1	28.56%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-12	-2.943e+01	0.0000	506.0	6.70%	1980.7	4.80%
ERF11(AP2EREBP)/col-ERF11-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e-12	-2.896e+01	0.0000	2457.0	32.52%	11843.7	28.71%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-12	-2.854e+01	0.0000	1364.0	18.05%	6199.4	15.03%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-12	-2.851e+01	0.0000	1196.0	15.83%	5353.7	12.98%
ERF115(AP2EREBP)/colamp-ERF115-DAP-Seq(GSE60143)/Homer	WTKRCGGCGB	1e-11	-2.659e+01	0.0000	3486.0	46.14%	17409.9	42.20%
ERF8(AP2EREBP)/colamp-ERF8-DAP-Seq(GSE60143)/Homer	CGCCGYCATW	1e-11	-2.653e+01	0.0000	2498.0	33.06%	12131.4	29.41%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-11	-2.645e+01	0.0000	1127.0	14.92%	5051.2	12.24%
RAP211(AP2EREBP)/colamp-RAP211-DAP-Seq(GSE60143)/Homer	RGCCGGCYWW	1e-11	-2.634e+01	0.0000	3359.0	44.45%	16732.9	40.56%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-11	-2.579e+01	0.0000	952.0	12.60%	4192.4	10.16%
AT1G28160(AP2EREBP)/colamp-AT1G28160-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e-10	-2.490e+01	0.0000	4117.0	54.49%	20900.0	50.66%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-10	-2.481e+01	0.0000	2157.0	28.55%	10389.3	25.18%
ERF10(AP2EREBP)/col-ERF10-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e-10	-2.446e+01	0.0000	2100.0	27.79%	10101.9	24.49%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-10	-2.379e+01	0.0000	4057.0	53.69%	20610.7	49.96%
ERF15(AP2EREBP)/colamp-ERF15-DAP-Seq(GSE60143)/Homer	WDHAGCMGCCAT	1e-9	-2.301e+01	0.0000	3754.0	49.68%	18987.0	46.03%
ATAF1(NAC)/col-ATAF1-DAP-Seq(GSE60143)/Homer	YACGTMAY	1e-9	-2.297e+01	0.0000	2374.0	31.42%	11588.2	28.09%
SeqBias: polyC-repeat	CCCCCCCCCC	1e-9	-2.274e+01	0.0000	7543.0	99.83%	40970.4	99.32%
CRF10(AP2EREBP)/col100-CRF10-DAP-Seq(GSE60143)/Homer	DCCGCCGYHA	1e-9	-2.235e+01	0.0000	3617.0	47.87%	18266.7	44.28%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-9	-2.228e+01	0.0000	2168.0	28.69%	10525.9	25.52%
RAP26(AP2EREBP)/colamp-RAP26-DAP-Seq(GSE60143)/Homer	HDATGGCGGCGG	1e-9	-2.227e+01	0.0000	2835.0	37.52%	14061.0	34.09%
ESE3(AP2EREBP)/col-ESE3-DAP-Seq(GSE60143)/Homer	GACGGTGG	1e-9	-2.215e+01	0.0000	3450.0	45.66%	17369.1	42.10%
AT1G12630(AP2EREBP)/colamp-AT1G12630-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e-9	-2.213e+01	0.0000	604.0	7.99%	2554.8	6.19%
ERF5(AP2EREBP)/colamp-ERF5-DAP-Seq(GSE60143)/Homer	DCMGCCGCCA	1e-9	-2.206e+01	0.0000	1778.0	23.53%	8493.2	20.59%
ERF4(AP2EREBP)/colamp-ERF4-DAP-Seq(GSE60143)/Homer	WDWTGGCGGCGG	1e-9	-2.204e+01	0.0000	2508.0	33.19%	12328.3	29.89%
DEAR2(AP2EREBP)/colamp-DEAR2-DAP-Seq(GSE60143)/Homer	HCACCGACAWHD	1e-9	-2.194e+01	0.0000	1239.0	16.40%	5722.4	13.87%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-9	-2.153e+01	0.0000	740.0	9.79%	3229.6	7.83%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-9	-2.152e+01	0.0000	1301.0	17.22%	6049.6	14.66%
AT4G18450(AP2EREBP)/col-AT4G18450-DAP-Seq(GSE60143)/Homer	ATGGCGGCKG	1e-9	-2.115e+01	0.0000	1614.0	21.36%	7669.1	18.59%
MYB101(MYB)/colamp-MYB101-DAP-Seq(GSE60143)/Homer	TAACNRMY	1e-9	-2.089e+01	0.0000	1408.0	18.63%	6614.6	16.03%
DREB2(AP2EREBP)/col-DREB2-DAP-Seq(GSE60143)/Homer	TMACCGACATWA	1e-9	-2.083e+01	0.0000	454.0	6.01%	1856.8	4.50%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-8	-2.053e+01	0.0000	531.0	7.03%	2229.6	5.40%
LBD23(LOBAS2)/colamp-LBD23-DAP-Seq(GSE60143)/Homer	GCGNAWWWTNCGCYW	1e-8	-2.024e+01	0.0000	1536.0	20.33%	7292.5	17.68%
TGA3(bZIP)/colamp-TGA3-DAP-Seq(GSE60143)/Homer	WTGATGACGTCATCW	1e-8	-1.954e+01	0.0000	75.0	0.99%	192.6	0.47%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e-8	-1.944e+01	0.0000	174.0	2.30%	593.7	1.44%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-8	-1.920e+01	0.0000	316.0	4.18%	1232.1	2.99%
MYB88(MYB)/col-MYB88-DAP-Seq(GSE60143)/Homer	HNACGCTCCT	1e-8	-1.917e+01	0.0000	3232.0	42.77%	16305.9	39.53%
ERF3(AP2EREBP)/colamp-ERF3-DAP-Seq(GSE60143)/Homer	ATGGCGGCGG	1e-8	-1.901e+01	0.0000	2075.0	27.46%	10144.4	24.59%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e-8	-1.878e+01	0.0000	1560.0	20.65%	7460.1	18.08%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-8	-1.863e+01	0.0000	1200.0	15.88%	5610.9	13.60%
ERF2(AP2EREBP)/colamp-ERF2-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e-8	-1.843e+01	0.0000	2634.0	34.86%	13127.9	31.82%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-7	-1.818e+01	0.0000	1972.0	26.10%	9631.4	23.35%
RAP212(AP2EREBP)/col-RAP212-DAP-Seq(GSE60143)/Homer	CGCCGCCATTTT	1e-7	-1.806e+01	0.0000	1916.0	25.36%	9341.8	22.65%
RRTF1(AP2EREBP)/colamp-RRTF1-DAP-Seq(GSE60143)/Homer	CCGCCGCHATTT	1e-7	-1.801e+01	0.0000	498.0	6.59%	2113.6	5.12%
TGA5(bZIP)/col-TGA5-DAP-Seq(GSE60143)/Homer	NNGATGACGTCATCN	1e-7	-1.790e+01	0.0000	96.0	1.27%	281.5	0.68%
SHN3(AP2EREBP)/col-SHN3-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e-7	-1.754e+01	0.0000	1805.0	23.89%	8778.0	21.28%
AT3G10030(Trihelix)/colamp-AT3G10030-DAP-Seq(GSE60143)/Homer	GCCGTTAA	1e-7	-1.743e+01	0.0000	521.0	6.90%	2235.4	5.42%
MYB65(MYB)/colamp-MYB65-DAP-Seq(GSE60143)/Homer	RACNGTTA	1e-7	-1.741e+01	0.0000	738.0	9.77%	3306.0	8.01%
ERF104(AP2EREBP)/col-ERF104-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e-7	-1.719e+01	0.0000	3138.0	41.53%	15878.9	38.49%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-7	-1.714e+01	0.0000	268.0	3.55%	1037.1	2.51%
CRF4(AP2EREBP)/colamp-CRF4-DAP-Seq(GSE60143)/Homer	CGCCGCCA	1e-7	-1.668e+01	0.0000	2060.0	27.26%	10148.8	24.60%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-7	-1.657e+01	0.0000	759.0	10.04%	3429.4	8.31%
ESE1(AP2EREBP)/col-ESE1-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e-7	-1.619e+01	0.0000	2780.0	36.79%	13996.1	33.93%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-6	-1.601e+01	0.0000	395.0	5.23%	1651.6	4.00%
ANAC047(NAC)/colamp-ANAC047-DAP-Seq(GSE60143)/Homer	WACACGTAACTT	1e-6	-1.600e+01	0.0000	439.0	5.81%	1863.2	4.52%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-6	-1.570e+01	0.0000	89.0	1.18%	267.7	0.65%
MYB56(MYB)/colamp-MYB56-DAP-Seq(GSE60143)/Homer	HTAACGRMHY	1e-6	-1.564e+01	0.0000	522.0	6.91%	2274.9	5.51%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-6	-1.553e+01	0.0000	429.0	5.68%	1823.8	4.42%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-6	-1.535e+01	0.0000	997.0	13.19%	4664.2	11.31%
LBD18(LOBAS2)/colamp-LBD18-DAP-Seq(GSE60143)/Homer	CKGAWWTTCHGS	1e-6	-1.523e+01	0.0000	1420.0	18.79%	6847.2	16.60%
ERF9(AP2EREBP)/colamp-ERF9-DAP-Seq(GSE60143)/Homer	AWATGGCGGCGG	1e-6	-1.518e+01	0.0000	1085.0	14.36%	5119.4	12.41%
ERF1(AP2EREBP)/colamp-ERF1-DAP-Seq(GSE60143)/Homer	GGCGGCTR	1e-6	-1.447e+01	0.0000	2298.0	30.41%	11495.0	27.87%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-6	-1.446e+01	0.0000	599.0	7.93%	2679.8	6.50%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-6	-1.414e+01	0.0000	529.0	7.00%	2339.5	5.67%
TGA10(bZIP)/colamp-TGA10-DAP-Seq(GSE60143)/Homer	ATGACGTC	1e-6	-1.412e+01	0.0000	354.0	4.69%	1486.5	3.60%
AT5G05550(Trihelix)/col-AT5G05550-DAP-Seq(GSE60143)/Homer	HDNHDTCKCCGGMGA	1e-6	-1.396e+01	0.0000	1728.0	22.87%	8502.4	20.61%
At5g08750(C3H)/col-At5g08750-DAP-Seq(GSE60143)/Homer	NWDTTGCGGCTR	1e-6	-1.393e+01	0.0000	520.0	6.88%	2300.0	5.58%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-6	-1.391e+01	0.0000	236.0	3.12%	931.3	2.26%
ERF73(AP2EREBP)/col-ERF73-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e-5	-1.342e+01	0.0000	2552.0	33.77%	12895.0	31.26%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-5	-1.332e+01	0.0000	358.0	4.74%	1519.9	3.68%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-5	-1.332e+01	0.0000	118.0	1.56%	406.8	0.99%
AT5G23930(mTERF)/col-AT5G23930-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e-5	-1.327e+01	0.0000	3723.0	49.27%	19223.9	46.60%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-5	-1.301e+01	0.0000	196.0	2.59%	758.0	1.84%
ASL18(LOBAS2)/colamp-ASL18-DAP-Seq(GSE60143)/Homer	CCGGAAAWTCMGGAR	1e-5	-1.274e+01	0.0000	1355.0	17.93%	6595.7	15.99%
At5g65130(AP2EREBP)/colamp-At5g65130-DAP-Seq(GSE60143)/Homer	CCRCCGACAWTN	1e-5	-1.244e+01	0.0000	509.0	6.74%	2277.0	5.52%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-5	-1.222e+01	0.0000	1254.0	16.60%	6088.4	14.76%
SPL5(SBP)/colamp-SPL5-DAP-Seq(GSE60143)/Homer	NNHGTACGGHNN	1e-5	-1.212e+01	0.0000	467.0	6.18%	2076.8	5.03%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-5	-1.195e+01	0.0000	1170.0	15.48%	5661.5	13.72%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-5	-1.187e+01	0.0001	1123.0	14.86%	5421.0	13.14%
Tal1	CATCTG	1e-5	-1.183e+01	0.0001	802.0	10.61%	3770.2	9.14%
At3g60580(C2H2)/col-At3g60580-DAP-Seq(GSE60143)/Homer	WTTYTACT	1e-5	-1.165e+01	0.0001	2494.0	33.01%	12667.2	30.71%
LBD19(LOBAS2)/colamp-LBD19-DAP-Seq(GSE60143)/Homer	CCKGAAWTTCMGGAW	1e-5	-1.156e+01	0.0001	1026.0	13.58%	4929.1	11.95%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-5	-1.154e+01	0.0001	1543.0	20.42%	7625.3	18.48%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-4	-1.149e+01	0.0001	235.0	3.11%	961.3	2.33%
MYB77(MYB)/col-MYB77-DAP-Seq(GSE60143)/Homer	NYAACBGYMC	1e-4	-1.146e+01	0.0001	1019.0	13.49%	4896.9	11.87%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-4	-1.141e+01	0.0001	39.0	0.52%	98.3	0.24%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-4	-1.124e+01	0.0001	77.0	1.02%	249.6	0.60%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-4	-1.122e+01	0.0001	235.0	3.11%	965.1	2.34%
MYB3R1(MYB)/col-MYB3R1-DAP-Seq(GSE60143)/Homer	WWDTDACCGTTR	1e-4	-1.121e+01	0.0001	181.0	2.40%	712.1	1.73%
CEJ1(AP2EREBP)/col-CEJ1-DAP-Seq(GSE60143)/Homer	WWTGTCGGTG	1e-4	-1.104e+01	0.0001	956.0	12.65%	4585.4	11.12%
SPL15(SBP)/colamp-SPL15-DAP-Seq(GSE60143)/Homer	WDWMMGTACADW	1e-4	-1.093e+01	0.0001	840.0	11.12%	3992.3	9.68%
ANAC079(NAC)/colamp-ANAC079-DAP-Seq(GSE60143)/Homer	TACACGCAACCT	1e-4	-1.086e+01	0.0001	215.0	2.85%	876.7	2.13%
MYB3R4(MYB)/col-MYB3R4-DAP-Seq(GSE60143)/Homer	AWWTAACCGTTR	1e-4	-1.054e+01	0.0002	116.0	1.54%	424.4	1.03%
PUCHI(AP2EREBP)/colamp-PUCHI-DAP-Seq(GSE60143)/Homer	GCGCCGTY	1e-4	-1.022e+01	0.0002	2743.0	36.30%	14076.4	34.12%
MYB105(MYB)/colamp-MYB105-DAP-Seq(GSE60143)/Homer	RATWCCGTTA	1e-4	-1.021e+01	0.0002	354.0	4.69%	1559.1	3.78%
TGA2(bZIP)/colamp-TGA2-DAP-Seq(GSE60143)/Homer	ACGTCAYCHH	1e-4	-9.810e+00	0.0004	409.0	5.41%	1840.4	4.46%
bZIP50(bZIP)/colamp-bZIP50-DAP-Seq(GSE60143)/Homer	GATGACGTCA	1e-4	-9.766e+00	0.0004	590.0	7.81%	2751.9	6.67%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-4	-9.563e+00	0.0005	398.0	5.27%	1791.4	4.34%
NLP7(RWPRK)/col-NLP7-DAP-Seq(GSE60143)/Homer	TGRCCYTTCR	1e-4	-9.450e+00	0.0005	1015.0	13.43%	4947.7	11.99%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-3	-9.020e+00	0.0008	678.0	8.97%	3222.9	7.81%
At1g36060(AP2EREBP)/colamp-At1g36060-DAP-Seq(GSE60143)/Homer	NNWWKGTCGGTG	1e-3	-8.928e+00	0.0008	702.0	9.29%	3348.5	8.12%
CAMTA1(CAMTA)/col-CAMTA1-DAP-Seq(GSE60143)/Homer	WWAACGCGTT	1e-3	-8.811e+00	0.0009	772.0	10.22%	3712.7	9.00%
TCX2(CPP)/colamp-TCX2-DAP-Seq(GSE60143)/Homer	NNWWTTYRAAHN	1e-3	-8.633e+00	0.0011	544.0	7.20%	2550.4	6.18%
At1g19210(AP2EREBP)/colamp-At1g19210-DAP-Seq(GSE60143)/Homer	HCACCGACCAHN	1e-3	-8.632e+00	0.0011	1303.0	17.24%	6487.4	15.73%
AT2G20110(CPP)/colamp-AT2G20110-DAP-Seq(GSE60143)/Homer	ATTYAAATHY	1e-3	-8.504e+00	0.0013	522.0	6.91%	2443.0	5.92%
SeqBias: G/A bias	RRRRRRRRRR	1e-3	-8.440e+00	0.0013	7548.0	99.89%	41124.6	99.69%
HY5(bZIP)/colamp-HY5-DAP-Seq(GSE60143)/Homer	RRTSACGTSD	1e-3	-8.374e+00	0.0014	615.0	8.14%	2920.3	7.08%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-3	-8.368e+00	0.0014	897.0	11.87%	4375.4	10.61%
SPL1(SBP)/colamp-SPL1-DAP-Seq(GSE60143)/Homer	HYGTACDTWH	1e-3	-8.335e+00	0.0014	1070.0	14.16%	5278.6	12.80%
FEA4(bZIP)/Corn-FEA4-ChIP-Seq(GSE61954)/Homer	TGACGTCACS	1e-3	-8.311e+00	0.0015	698.0	9.24%	3348.9	8.12%
ARF2(ARF)/col-ARF2-DAP-Seq(GSE60143)/Homer	TTGTCGGMWN	1e-3	-8.199e+00	0.0016	1640.0	21.70%	8288.8	20.09%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-3	-8.145e+00	0.0017	260.0	3.44%	1140.3	2.76%
DREB26(AP2EREBP)/col-DREB26-DAP-Seq(GSE60143)/Homer	CCACCGACAH	1e-3	-8.116e+00	0.0018	378.0	5.00%	1726.5	4.19%
SOL1(CPP)/colamp-SOL1-DAP-Seq(GSE60143)/Homer	ATTTAAATHN	1e-3	-7.973e+00	0.0020	515.0	6.82%	2422.8	5.87%
ANAC046(NAC)/colamp-ANAC046-DAP-Seq(GSE60143)/Homer	ACACGYWAYC	1e-3	-7.712e+00	0.0026	1025.0	13.57%	5069.2	12.29%
BIM3(bHLH)/col-BIM3-DAP-Seq(GSE60143)/Homer	TWVTCACGTGAB	1e-3	-7.566e+00	0.0030	113.0	1.50%	445.3	1.08%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-3	-7.524e+00	0.0031	190.0	2.51%	811.8	1.97%
TGA9(bZIP)/colamp-TGA9-DAP-Seq(GSE60143)/Homer	VTGACGTC	1e-3	-7.424e+00	0.0034	647.0	8.56%	3116.8	7.56%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e-3	-7.368e+00	0.0036	11.0	0.15%	18.3	0.04%
ATHB15(HB)/col-ATHB15-DAP-Seq(GSE60143)/Homer	GYAATSATTA	1e-3	-7.220e+00	0.0041	109.0	1.44%	431.5	1.05%
LBD13(LOBAS2)/colamp-LBD13-DAP-Seq(GSE60143)/Homer	KCCGTNWTTTBCGGC	1e-3	-7.195e+00	0.0042	1398.0	18.50%	7057.6	17.11%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-3	-7.169e+00	0.0043	404.0	5.35%	1882.0	4.56%
AT3G57600(AP2EREBP)/col-AT3G57600-DAP-Seq(GSE60143)/Homer	GGCGGTGG	1e-3	-7.148e+00	0.0043	2293.0	30.35%	11834.0	28.69%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-3	-6.937e+00	0.0053	357.0	4.72%	1651.7	4.00%
BIM1(bHLH)/colamp-BIM1-DAP-Seq(GSE60143)/Homer	NNNNNNVTCACGTGM	1e-2	-6.825e+00	0.0059	110.0	1.46%	441.6	1.07%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-2	-6.672e+00	0.0069	747.0	9.89%	3662.7	8.88%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-2	-6.660e+00	0.0069	125.0	1.65%	514.5	1.25%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e-2	-6.634e+00	0.0070	252.0	3.34%	1133.5	2.75%
HSFA6A(HSF)/col-HSFA6A-DAP-Seq(GSE60143)/Homer	RGAAGNTTCTAGAAN	1e-2	-6.582e+00	0.0074	21.0	0.28%	54.2	0.13%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-2	-6.555e+00	0.0075	69.0	0.91%	256.2	0.62%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-2	-6.554e+00	0.0075	162.0	2.14%	693.1	1.68%
AZF1(C2H2)/colamp-AZF1-DAP-Seq(GSE60143)/Homer	DKSWCACT	1e-2	-6.452e+00	0.0083	2661.0	35.22%	13861.1	33.60%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-2	-6.422e+00	0.0085	64.0	0.85%	235.7	0.57%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-2	-6.422e+00	0.0085	438.0	5.80%	2077.3	5.04%
SPL14(SBP)/col-SPL14-DAP-Seq(GSE60143)/Homer	NNWHTGTACGGAHNH	1e-2	-6.333e+00	0.0092	162.0	2.14%	697.1	1.69%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e-2	-6.268e+00	0.0097	103.0	1.36%	416.4	1.01%
bHLH28(bHLH)/col-bHLH28-DAP-Seq(GSE60143)/Homer	NHHTGTACGGAH	1e-2	-6.222e+00	0.0101	300.0	3.97%	1383.3	3.35%
EMB1789(C3H)/col-EMB1789-DAP-Seq(GSE60143)/Homer	TWTTTACCGYND	1e-2	-6.221e+00	0.0101	170.0	2.25%	738.7	1.79%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e-2	-6.104e+00	0.0113	2390.0	31.63%	12424.7	30.12%
bHLH157(bHLH)/col-bHLH157-DAP-Seq(GSE60143)/Homer	KACACGTCTCTY	1e-2	-6.083e+00	0.0114	135.0	1.79%	571.2	1.38%
TGA4(bZIP)/colamp-TGA4-DAP-Seq(GSE60143)/Homer	RTGACGTCAKCW	1e-2	-6.031e+00	0.0120	176.0	2.33%	771.4	1.87%
SeqBias: C/A-bias	MMMMMMMMMM	1e-2	-5.989e+00	0.0124	7516.0	99.47%	40918.7	99.19%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-2	-5.741e+00	0.0158	2269.0	30.03%	11798.3	28.60%
MYB73(MYB)/col-MYB73-DAP-Seq(GSE60143)/Homer	NNNNHAACNGHHDHN	1e-2	-5.669e+00	0.0169	929.0	12.29%	4659.9	11.30%
TGA1(bZIP)/colamp-TGA1-DAP-Seq(GSE60143)/Homer	TGACGTCAKC	1e-2	-5.631e+00	0.0175	231.0	3.06%	1052.6	2.55%
SeqBias: CG-repeat	CGCGCGCGCG	1e-2	-5.542e+00	0.0190	4120.0	54.53%	21861.7	52.99%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e-2	-5.536e+00	0.0190	139.0	1.84%	600.6	1.46%
bZIP18(bZIP)/colamp-bZIP18-DAP-Seq(GSE60143)/Homer	KGMCAGCTND	1e-2	-5.409e+00	0.0215	3605.0	47.71%	19060.7	46.20%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-2	-5.383e+00	0.0219	300.0	3.97%	1406.4	3.41%
SeqBias: GA-repeat	GAGAGAGAGA	1e-2	-5.342e+00	0.0227	3998.0	52.91%	21210.2	51.42%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-2	-5.337e+00	0.0227	967.0	12.80%	4876.2	11.82%
AT1G10720(BSD)/col-AT1G10720-DAP-Seq(GSE60143)/Homer	TTCTAGAAKCTTCTA	1e-2	-5.306e+00	0.0233	14.0	0.19%	34.3	0.08%
HuR(?)/HEK293-HuR-CLIP-Seq(GSE87887)/Homer	BTTTGGTTTG	1e-2	-5.294e+00	0.0235	1556.0	20.59%	8006.7	19.41%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-2	-5.285e+00	0.0236	145.0	1.92%	635.0	1.54%
CBF3(AP2EREBP)/colamp-CBF3-DAP-Seq(GSE60143)/Homer	YNRCCGACATNN	1e-2	-5.279e+00	0.0236	402.0	5.32%	1930.3	4.68%
AT1G23810(Orphan)/col-AT1G23810-DAP-Seq(GSE60143)/Homer	TTCTAGAAGSTTCTA	1e-2	-5.198e+00	0.0255	22.0	0.29%	65.7	0.16%
MYB118(MYB)/colamp-MYB118-DAP-Seq(GSE60143)/Homer	TAWCCGTTAC	1e-2	-5.180e+00	0.0258	210.0	2.78%	958.4	2.32%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-2	-5.085e+00	0.0283	1001.0	13.25%	5069.8	12.29%
JKD(C2H2)/col-JKD-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTT	1e-2	-5.074e+00	0.0284	76.0	1.01%	306.6	0.74%
MYB33(MYB)/col-MYB33-DAP-Seq(GSE60143)/Homer	DDTYNGTTAN	1e-2	-5.037e+00	0.0294	777.0	10.28%	3891.2	9.43%
SeqBias: TA-repeat	TATATATATA	1e-2	-5.022e+00	0.0296	907.0	12.00%	4576.9	11.09%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e-2	-4.996e+00	0.0303	733.0	9.70%	3662.0	8.88%
ANAC038(NAC)/col-ANAC038-DAP-Seq(GSE60143)/Homer	ACACGTWAYC	1e-2	-4.967e+00	0.0310	1091.0	14.44%	5552.3	13.46%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-2	-4.958e+00	0.0312	130.0	1.72%	567.3	1.38%
MYB70(MYB)/col-MYB70-DAP-Seq(GSE60143)/Homer	WTAACNGTTA	1e-2	-4.952e+00	0.0312	708.0	9.37%	3533.8	8.57%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-2	-4.903e+00	0.0326	374.0	4.95%	1799.4	4.36%
SPL13(SBP)/col-SPL13-DAP-Seq(GSE60143)/Homer	WAHTGTACGGAH	1e-2	-4.829e+00	0.0349	94.0	1.24%	395.6	0.96%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-2	-4.800e+00	0.0358	315.0	4.17%	1500.0	3.64%
SPL11(SBP)/col100-SPL11-DAP-Seq(GSE60143)/Homer	YTGTACTTBH	1e-2	-4.733e+00	0.0381	295.0	3.90%	1400.3	3.39%
TGA6(bZIP)/colamp-TGA6-DAP-Seq(GSE60143)/Homer	TGACGTCABC	1e-2	-4.685e+00	0.0398	370.0	4.90%	1786.4	4.33%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e-1	-4.574e+00	0.0442	57.0	0.75%	224.4	0.54%
STZ(C2H2)/colamp-STZ-DAP-Seq(GSE60143)/Homer	HNBTCACT	1e-1	-4.571e+00	0.0442	2806.0	37.14%	14790.0	35.85%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-1	-4.553e+00	0.0448	964.0	12.76%	4903.2	11.89%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e-1	-4.545e+00	0.0449	16.0	0.21%	45.2	0.11%
MYB81(MYB)/col-MYB81-DAP-Seq(GSE60143)/Homer	NWAACSGWTWNN	1e-1	-4.543e+00	0.0449	736.0	9.74%	3700.2	8.97%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-1	-4.485e+00	0.0472	70.0	0.93%	286.3	0.69%
TSO1(CPP)/col-TSO1-DAP-Seq(GSE60143)/Homer	RAATTTRAAW	1e-1	-4.437e+00	0.0494	44.0	0.58%	166.2	0.40%
AT1G47655(C2C2dof)/colamp-AT1G47655-DAP-Seq(GSE60143)/Homer	YHACTTTTTS	1e-1	-4.412e+00	0.0504	1690.0	22.37%	8784.9	21.30%
MYB98(MYB)/col-MYB98-DAP-Seq(GSE60143)/Homer	NWDCCGTTAC	1e-1	-4.391e+00	0.0512	205.0	2.71%	953.1	2.31%
ARF16(ARF)/col-ARF16-DAP-Seq(GSE60143)/Homer	ATTTTACGAT	1e-1	-4.363e+00	0.0524	73.0	0.97%	302.0	0.73%
AT1G76870(Trihelix)/col-AT1G76870-DAP-Seq(GSE60143)/Homer	AAAACCRGWW	1e-1	-4.354e+00	0.0527	165.0	2.18%	753.4	1.83%
GT3a(Trihelix)/col-GT3a-DAP-Seq(GSE60143)/Homer	WNACACGTGTYWWAW	1e-1	-4.316e+00	0.0545	76.0	1.01%	317.2	0.77%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-1	-4.287e+00	0.0559	336.0	4.45%	1625.3	3.94%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e-1	-4.285e+00	0.0559	315.0	4.17%	1517.0	3.68%
SPL3(SBP)/colamp-SPL3-DAP-Seq(GSE60143)/Homer	WDTTGTACGGAH	1e-1	-4.166e+00	0.0625	44.0	0.58%	169.3	0.41%
SPL9(SBP)/colamp-SPL9-DAP-Seq(GSE60143)/Homer	BTGTACTT	1e-1	-4.135e+00	0.0641	1295.0	17.14%	6690.7	16.22%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-1	-4.103e+00	0.0659	148.0	1.96%	674.1	1.63%
MYB119(MYB)/colamp-MYB119-DAP-Seq(GSE60143)/Homer	YRACCGTTACDD	1e-1	-4.064e+00	0.0683	205.0	2.71%	962.7	2.33%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-1	-4.021e+00	0.0710	1581.0	20.92%	8229.3	19.95%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-1	-3.940e+00	0.0766	258.0	3.41%	1236.6	3.00%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-1	-3.938e+00	0.0766	98.0	1.30%	430.6	1.04%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-1	-3.856e+00	0.0826	22.0	0.29%	74.9	0.18%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-1	-3.783e+00	0.0885	536.0	7.09%	2687.5	6.51%
HAT2(Homeobox)/colamp-HAT2-DAP-Seq(GSE60143)/Homer	CYAATSATTR	1e-1	-3.657e+00	0.0999	255.0	3.37%	1230.1	2.98%
AT5G59990(C2C2COlike)/colamp-AT5G59990-DAP-Seq(GSE60143)/Homer	TCTCAACCGTTCATT	1e-1	-3.655e+00	0.0999	14.0	0.19%	42.8	0.10%
MYB44(MYB)/colamp-MYB44-DAP-Seq(GSE60143)/Homer	CVGTTWWKTCNGTTA	1e-1	-3.654e+00	0.0999	34.0	0.45%	129.0	0.31%
AT5G47660(Trihelix)/colamp-AT5G47660-DAP-Seq(GSE60143)/Homer	AWTTTTACCG	1e-1	-3.616e+00	0.1029	581.0	7.69%	2933.0	7.11%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-1	-3.602e+00	0.1038	786.0	10.40%	4016.3	9.74%
TRP2(MYBrelated)/colamp-TRP2-DAP-Seq(GSE60143)/Homer	TAAACCCT	1e-1	-3.581e+00	0.1057	70.0	0.93%	300.7	0.73%
At4g16750(AP2EREBP)/col-At4g16750-DAP-Seq(GSE60143)/Homer	HACCGACAHA	1e-1	-3.511e+00	0.1129	669.0	8.85%	3402.9	8.25%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e-1	-3.491e+00	0.1147	402.0	5.32%	1999.1	4.85%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e-1	-3.472e+00	0.1164	131.0	1.73%	604.0	1.46%
CAMTA5(CAMTA)/col-CAMTA5-DAP-Seq(GSE60143)/Homer	ACGCGTTTTANACRC	1e-1	-3.468e+00	0.1164	238.0	3.15%	1149.1	2.79%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e-1	-3.412e+00	0.1226	999.0	13.22%	5161.4	12.51%
At5g04390(C2H2)/col200-At5g04390-DAP-Seq(GSE60143)/Homer	AGTGANDN	1e-1	-3.402e+00	0.1233	2653.0	35.11%	14068.2	34.10%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-1	-3.396e+00	0.1236	29.0	0.38%	109.8	0.27%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-1	-3.384e+00	0.1246	441.0	5.84%	2208.1	5.35%
GTL1(Trihelix)/colamp-GTL1-DAP-Seq(GSE60143)/Homer	WWTTTACCKY	1e-1	-3.378e+00	0.1248	444.0	5.88%	2224.0	5.39%
CELF2(RRM)/JSL1-CELF2-CLIP-Seq(GSE71264)/Homer	RGTGTCAG	1e-1	-3.361e+00	0.1265	212.0	2.81%	1019.6	2.47%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e-1	-3.360e+00	0.1265	324.0	4.29%	1598.6	3.88%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e-1	-3.333e+00	0.1291	544.0	7.20%	2752.5	6.67%
ANAC045(NAC)/col-ANAC045-DAP-Seq(GSE60143)/Homer	DNCKTVNNNNNNAMG	1e-1	-3.331e+00	0.1291	988.0	13.08%	5108.6	12.38%
OBP3(C2C2dof)/col-OBP3-DAP-Seq(GSE60143)/Homer	NYWACTTTTT	1e-1	-3.319e+00	0.1298	1431.0	18.94%	7480.7	18.13%
LBD2(LOBAS2)/colamp-LBD2-DAP-Seq(GSE60143)/Homer	TCCGAWTTTTTCGGN	1e-1	-3.296e+00	0.1324	211.0	2.79%	1016.6	2.46%
MYB3R5(MYB)/col-MYB3R5-DAP-Seq(GSE60143)/Homer	THYAACGGTHAWAWT	1e-1	-3.279e+00	0.1340	48.0	0.64%	199.6	0.48%
PHV(HB)/col-PHV-DAP-Seq(GSE60143)/Homer	RTAATSATTA	1e-1	-3.174e+00	0.1483	119.0	1.57%	551.7	1.34%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-1	-3.174e+00	0.1483	56.0	0.74%	239.7	0.58%
ABF1(bZIP)/Arabidopsis-ABF1-ChIP-Seq(GSE80564)/Homer	CACGTGGC	1e-1	-3.132e+00	0.1536	815.0	10.79%	4200.3	10.18%
Rap210(AP2EREBP)/col-Rap210-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e-1	-3.124e+00	0.1541	592.0	7.83%	3017.7	7.32%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-1	-3.098e+00	0.1576	2120.0	28.06%	11214.0	27.18%
AT3G60490(AP2EREBP)/colamp-AT3G60490-DAP-Seq(GSE60143)/Homer	NNRCCGACANNNNNN	1e-1	-3.080e+00	0.1600	272.0	3.60%	1340.0	3.25%
At2g44940(AP2EREBP)/colamp-At2g44940-DAP-Seq(GSE60143)/Homer	NYACCGACAHNNNNN	1e-1	-3.053e+00	0.1637	174.0	2.30%	834.2	2.02%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-1	-3.045e+00	0.1644	383.0	5.07%	1920.3	4.65%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e-1	-2.867e+00	0.1957	103.0	1.36%	478.7	1.16%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-1	-2.853e+00	0.1976	575.0	7.61%	2943.1	7.13%
CBF2(AP2EREBP)/colamp-CBF2-DAP-Seq(GSE60143)/Homer	YBRCCGACATNNNNN	1e-1	-2.848e+00	0.1979	353.0	4.67%	1772.1	4.30%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e-1	-2.842e+00	0.1984	195.0	2.58%	949.5	2.30%
MYB41(MYB)/col-MYB41-DAP-Seq(GSE60143)/Homer	BYTYACCTAA	1e-1	-2.817e+00	0.2027	138.0	1.83%	657.4	1.59%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-1	-2.773e+00	0.2111	1034.0	13.68%	5396.7	13.08%
At4g31060(AP2EREBP)/colamp-At4g31060-DAP-Seq(GSE60143)/Homer	CACCGACAAW	1e-1	-2.770e+00	0.2111	362.0	4.79%	1823.4	4.42%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-1	-2.768e+00	0.2111	55.0	0.73%	241.1	0.58%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-1	-2.764e+00	0.2111	110.0	1.46%	516.3	1.25%
At1g22810(AP2EREBP)/colamp-At1g22810-DAP-Seq(GSE60143)/Homer	BCACCGACANNN	1e-1	-2.756e+00	0.2116	456.0	6.03%	2320.0	5.62%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e-1	-2.755e+00	0.2116	33.0	0.44%	135.5	0.33%
At4g28140(AP2EREBP)/colamp-At4g28140-DAP-Seq(GSE60143)/Homer	DCCACCGACCAW	1e-1	-2.746e+00	0.2121	369.0	4.88%	1861.4	4.51%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e-1	-2.728e+00	0.2152	22.0	0.29%	84.6	0.20%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e-1	-2.726e+00	0.2152	3.0	0.04%	5.5	0.01%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e-1	-2.724e+00	0.2152	45.0	0.60%	193.2	0.47%
MYB3(MYB)/Arabidopsis-MYB3-ChIP-Seq(GSE80564)/Homer	GKTAGGTRGG	1e-1	-2.708e+00	0.2172	845.0	11.18%	4390.3	10.64%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-1	-2.692e+00	0.2200	96.0	1.27%	447.5	1.08%
HSFA1E(HSF)/col-HSFA1E-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e-1	-2.686e+00	0.2206	29.0	0.38%	117.8	0.29%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-1	-2.674e+00	0.2223	206.0	2.73%	1012.3	2.45%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-1	-2.657e+00	0.2254	55.0	0.73%	243.3	0.59%
bHLH10(bHLH)/colamp-bHLH10-DAP-Seq(GSE60143)/Homer	YACCGACA	1e-1	-2.618e+00	0.2336	284.0	3.76%	1421.8	3.45%
HSFB4(HSF)/col-HSFB4-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e-1	-2.607e+00	0.2353	16.0	0.21%	58.9	0.14%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e-1	-2.567e+00	0.2440	126.0	1.67%	603.2	1.46%
CBF1(AP2EREBP)/colamp-CBF1-DAP-Seq(GSE60143)/Homer	YRCCGACATN	1e-1	-2.540e+00	0.2499	595.0	7.87%	3069.8	7.44%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-1	-2.505e+00	0.2580	353.0	4.67%	1789.2	4.34%
HSFB3(HSF)/colamp-HSFB3-DAP-Seq(GSE60143)/Homer	TTCTAGAAGMTTHTW	1e-1	-2.460e+00	0.2689	19.0	0.25%	73.0	0.18%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-1	-2.454e+00	0.2696	1722.0	22.79%	9129.2	22.13%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-1	-2.445e+00	0.2711	197.0	2.61%	975.0	2.36%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e-1	-2.389e+00	0.2858	171.0	2.26%	841.8	2.04%
LEP(AP2EREBP)/col-LEP-DAP-Seq(GSE60143)/Homer	CDCCGCCGTC	1e-1	-2.363e+00	0.2922	1396.0	18.48%	7379.9	17.89%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-2.297e+00	0.3112	394.0	5.21%	2017.1	4.89%
AT1G77200(AP2EREBP)/colamp-AT1G77200-DAP-Seq(GSE60143)/Homer	ACCGACAHWD	1e0	-2.274e+00	0.3174	668.0	8.84%	3477.4	8.43%
At1g14580(C2H2)/colamp-At1g14580-DAP-Seq(GSE60143)/Homer	CASAAAAMGACAAAA	1e0	-2.249e+00	0.3244	60.0	0.79%	276.7	0.67%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e0	-2.245e+00	0.3244	197.0	2.61%	982.9	2.38%
At1g77640(AP2EREBP)/col-At1g77640-DAP-Seq(GSE60143)/Homer	TGTCGGTGGA	1e0	-2.236e+00	0.3264	221.0	2.92%	1108.8	2.69%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-2.219e+00	0.3308	218.0	2.89%	1093.6	2.65%
HDG1(Homeobox)/col100-HDG1-DAP-Seq(GSE60143)/Homer	DDYAATTAATGH	1e0	-2.215e+00	0.3310	187.0	2.47%	931.5	2.26%
NUC(C2H2)/col-NUC-DAP-Seq(GSE60143)/Homer	HAVAAAACGACAAAA	1e0	-2.206e+00	0.3331	32.0	0.42%	138.9	0.34%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	-2.198e+00	0.3344	7556.0	100.00%	41241.0	99.97%
CDM1(C3H)/colamp-CDM1-DAP-Seq(GSE60143)/Homer	CCGAWAWTWTCGGAN	1e0	-2.176e+00	0.3409	68.0	0.90%	318.4	0.77%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-2.169e+00	0.3423	551.0	7.29%	2860.6	6.93%
HSFC1(HSF)/col-HSFC1-DAP-Seq(GSE60143)/Homer	HTTCTAGAADCTTCT	1e0	-2.164e+00	0.3428	63.0	0.83%	293.7	0.71%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-2.148e+00	0.3470	47.0	0.62%	213.7	0.52%
JGL(C2H2)/col-JGL-DAP-Seq(GSE60143)/Homer	ACYTTCAGTT	1e0	-2.137e+00	0.3499	726.0	9.61%	3798.9	9.21%
TCP1(TCP)/col-TCP1-DAP-Seq(GSE60143)/Homer	GGGGGCCCMMCN	1e0	-2.084e+00	0.3678	252.0	3.34%	1278.4	3.10%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-2.076e+00	0.3693	1121.0	14.84%	5926.2	14.37%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-2.053e+00	0.3768	78.0	1.03%	372.5	0.90%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-2.050e+00	0.3768	472.0	6.25%	2447.7	5.93%
SRS7(SRS)/colamp-SRS7-DAP-Seq(GSE60143)/Homer	HATAGGTTTH	1e0	-2.045e+00	0.3775	1389.0	18.38%	7375.0	17.88%
TINY(AP2EREBP)/col-TINY-DAP-Seq(GSE60143)/Homer	NNCACCGACA	1e0	-2.009e+00	0.3901	253.0	3.35%	1287.9	3.12%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-2.006e+00	0.3902	66.0	0.87%	312.7	0.76%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-2.004e+00	0.3902	1285.0	17.01%	6818.0	16.53%
HSF7(HSF)/colamp-HSF7-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-1.973e+00	0.4008	56.0	0.74%	262.9	0.64%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-1.947e+00	0.4100	43.0	0.57%	197.6	0.48%
AtGRF6(GRF)/col-AtGRF6-DAP-Seq(GSE60143)/Homer	NTGTCAGADNNNNNN	1e0	-1.945e+00	0.4100	646.0	8.55%	3386.0	8.21%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-1.939e+00	0.4106	625.0	8.27%	3274.0	7.94%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.930e+00	0.4132	56.0	0.74%	263.7	0.64%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-1.913e+00	0.4187	119.0	1.57%	588.7	1.43%
CDF3(C2C2dof)/colamp-CDF3-DAP-Seq(GSE60143)/Homer	AAAAGTRM	1e0	-1.890e+00	0.4273	796.0	10.53%	4195.1	10.17%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-1.887e+00	0.4273	350.0	4.63%	1809.0	4.39%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e0	-1.874e+00	0.4315	1842.0	24.38%	9847.0	23.87%
VND6(NAC)/col-VND6-DAP-Seq(GSE60143)/Homer	DCTTNHTTTTYAMGY	1e0	-1.874e+00	0.4315	468.0	6.19%	2438.2	5.91%
AT1G44830(AP2EREBP)/col-AT1G44830-DAP-Seq(GSE60143)/Homer	NCCACCGACA	1e0	-1.825e+00	0.4506	446.0	5.90%	2324.5	5.63%
AT1G76880(Trihelix)/col-AT1G76880-DAP-Seq(GSE60143)/Homer	ACGGTAAAAW	1e0	-1.818e+00	0.4523	139.0	1.84%	697.0	1.69%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.812e+00	0.4535	91.0	1.20%	446.3	1.08%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-1.799e+00	0.4582	140.0	1.85%	702.3	1.70%
At5g62940(C2C2dof)/col-At5g62940-DAP-Seq(GSE60143)/Homer	WHWHHACTTTTT	1e0	-1.793e+00	0.4593	1469.0	19.44%	7837.2	19.00%
AT3G25990(Trihelix)/colamp-AT3G25990-DAP-Seq(GSE60143)/Homer	TTAACCATAG	1e0	-1.759e+00	0.4738	229.0	3.03%	1173.3	2.84%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e0	-1.759e+00	0.4738	1194.0	15.80%	6354.5	15.40%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-1.756e+00	0.4738	97.0	1.28%	479.2	1.16%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e0	-1.732e+00	0.4828	415.0	5.49%	2165.4	5.25%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-1.726e+00	0.4843	70.0	0.93%	340.7	0.83%
DEL1(E2FDP)/colamp-DEL1-DAP-Seq(GSE60143)/Homer	TTCCCGCCAA	1e0	-1.701e+00	0.4949	3.0	0.04%	8.3	0.02%
MYB113(MYB)/col-MYB113-DAP-Seq(GSE60143)/Homer	HNDAWTCMGTTAYWN	1e0	-1.694e+00	0.4967	204.0	2.70%	1044.3	2.53%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.606e+00	0.5413	215.0	2.85%	1107.7	2.69%
HSF6(HSF)/col-HSF6-DAP-Seq(GSE60143)/Homer	TTYTAGAAGCTTCTA	1e0	-1.605e+00	0.5413	67.0	0.89%	328.8	0.80%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-1.583e+00	0.5503	1893.0	25.05%	10164.1	24.64%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-1.578e+00	0.5514	96.0	1.27%	480.6	1.17%
Knotted(Homeobox)/Corn-KN1-ChIP-Seq(GSE39161)/Homer	GAYGNGACRGGN	1e0	-1.533e+00	0.5754	921.0	12.19%	4905.9	11.89%
AT3G16280(AP2EREBP)/colamp-AT3G16280-DAP-Seq(GSE60143)/Homer	HCACCGACAHHDHHN	1e0	-1.529e+00	0.5759	284.0	3.76%	1479.8	3.59%
ATHB20(Homeobox)/colamp-ATHB20-DAP-Seq(GSE60143)/Homer	CAATHATT	1e0	-1.528e+00	0.5759	131.0	1.73%	666.2	1.61%
AGL95(ND)/col-AGL95-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-1.521e+00	0.5774	30.0	0.40%	140.4	0.34%
ZML1(C2C2gata)/colamp-ZML1-DAP-Seq(GSE60143)/Homer	ATCWYRACCGTTSRW	1e0	-1.516e+00	0.5782	6.0	0.08%	22.6	0.05%
AT5G22990(C2H2)/col-AT5G22990-DAP-Seq(GSE60143)/Homer	WCGAHDTCGWHN	1e0	-1.506e+00	0.5825	67.0	0.89%	331.7	0.80%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-1.477e+00	0.5983	320.0	4.24%	1675.3	4.06%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-1.473e+00	0.5989	62.0	0.82%	306.6	0.74%
ANAC042(NAC)/col-ANAC042-DAP-Seq(GSE60143)/Homer	CGTNDHNDHNACGKY	1e0	-1.457e+00	0.6068	1686.0	22.31%	9059.4	21.96%
At4g32800(AP2EREBP)/colamp-At4g32800-DAP-Seq(GSE60143)/Homer	DYCACCGACAHWWWH	1e0	-1.443e+00	0.6134	88.0	1.16%	443.8	1.08%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-1.429e+00	0.6205	221.0	2.92%	1149.4	2.79%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-1.419e+00	0.6248	59.0	0.78%	292.8	0.71%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-1.398e+00	0.6363	508.0	6.72%	2691.5	6.52%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-1.392e+00	0.6386	871.0	11.53%	4651.5	11.28%
AT1G20910(ARID)/col-AT1G20910-DAP-Seq(GSE60143)/Homer	THAATTRAWN	1e0	-1.389e+00	0.6386	555.0	7.35%	2945.4	7.14%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e0	-1.379e+00	0.6434	135.0	1.79%	694.5	1.68%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e0	-1.362e+00	0.6527	46.0	0.61%	226.0	0.55%
ZIM(C2C2gata)/col-ZIM-DAP-Seq(GSE60143)/Homer	ATCSRACGGTYRAGA	1e0	-1.359e+00	0.6527	7.0	0.09%	28.1	0.07%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e0	-1.358e+00	0.6527	343.0	4.54%	1807.9	4.38%
Adof1(C2C2dof)/col-Adof1-DAP-Seq(GSE60143)/Homer	NRWAAAGYDV	1e0	-1.351e+00	0.6539	1253.0	16.58%	6725.2	16.30%
bZIP69(bZIP)/col-bZIP69-DAP-Seq(GSE60143)/Homer	GACAGCTGKCAW	1e0	-1.337e+00	0.6617	65.0	0.86%	326.4	0.79%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-1.315e+00	0.6744	334.0	4.42%	1762.4	4.27%
AT4G26030(C2H2)/col-AT4G26030-DAP-Seq(GSE60143)/Homer	BYYACCWACY	1e0	-1.313e+00	0.6744	376.0	4.98%	1988.1	4.82%
AT2G20400(G2like)/colamp-AT2G20400-DAP-Seq(GSE60143)/Homer	DNVGAATATTCBNHN	1e0	-1.310e+00	0.6744	39.0	0.52%	191.2	0.46%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.307e+00	0.6744	33.0	0.44%	160.2	0.39%
DDF1(AP2EREBP)/col-DDF1-DAP-Seq(GSE60143)/Homer	GCCGACAT	1e0	-1.300e+00	0.6775	312.0	4.13%	1645.2	3.99%
GT2(Trihelix)/colamp-GT2-DAP-Seq(GSE60143)/Homer	AMGGTAAAWWWN	1e0	-1.293e+00	0.6805	403.0	5.33%	2135.8	5.18%
MYB51(MYB)/col-MYB51-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e0	-1.283e+00	0.6850	367.0	4.86%	1942.2	4.71%
TBP3(MYBrelated)/col-TBP3-DAP-Seq(GSE60143)/Homer	VYTAGGGCAN	1e0	-1.279e+00	0.6861	248.0	3.28%	1303.5	3.16%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.270e+00	0.6905	238.0	3.15%	1251.0	3.03%
HSF21(HSF)/col-HSF21-DAP-Seq(GSE60143)/Homer	CTTCTAGAAGMTTYW	1e0	-1.242e+00	0.7080	30.0	0.40%	146.8	0.36%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-1.234e+00	0.7121	418.0	5.53%	2221.1	5.38%
At1g64620(C2C2dof)/colamp-At1g64620-DAP-Seq(GSE60143)/Homer	CACTTTTT	1e0	-1.233e+00	0.7121	657.0	8.70%	3512.4	8.51%
MGP(C2H2)/colamp-MGP-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTW	1e0	-1.222e+00	0.7171	79.0	1.05%	404.7	0.98%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-1.215e+00	0.7197	236.0	3.12%	1243.6	3.01%
IDD5(C2H2)/colamp-IDD5-DAP-Seq(GSE60143)/Homer	TTTTGTCTTTTTBTK	1e0	-1.206e+00	0.7243	218.0	2.89%	1147.1	2.78%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-1.198e+00	0.7282	926.0	12.26%	4974.0	12.06%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-1.194e+00	0.7292	17.0	0.22%	80.0	0.19%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-1.192e+00	0.7292	29.0	0.38%	142.3	0.35%
ANAC083(NAC)/col-ANAC083-DAP-Seq(GSE60143)/Homer	CKTRWNNNWYAMGTA	1e0	-1.187e+00	0.7304	276.0	3.65%	1460.3	3.54%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-1.186e+00	0.7304	71.0	0.94%	363.7	0.88%
O2(bZIP)/Corn-O2-ChIP-Seq(GSE63991)/Homer	GCTGACGTGGCA	1e0	-1.165e+00	0.7430	121.0	1.60%	630.2	1.53%
AT1G24250(Orphan)/col-AT1G24250-DAP-Seq(GSE60143)/Homer	KTDGTTGGTDGTTGG	1e0	-1.164e+00	0.7430	103.0	1.36%	534.8	1.30%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-1.157e+00	0.7456	77.0	1.02%	396.0	0.96%
ANAC094(NAC)/col-ANAC094-DAP-Seq(GSE60143)/Homer	DVCGTRNNNNNYACG	1e0	-1.139e+00	0.7572	691.0	9.15%	3707.4	8.99%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e0	-1.125e+00	0.7652	118.0	1.56%	616.9	1.50%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-1.121e+00	0.7663	852.0	11.28%	4582.3	11.11%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.110e+00	0.7733	71.0	0.94%	366.4	0.89%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-1.099e+00	0.7796	689.0	9.12%	3701.5	8.97%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.097e+00	0.7796	349.0	4.62%	1861.7	4.51%
ASHR1(ND)/col-ASHR1-DAP-Seq(GSE60143)/Homer	NTGGTGAN	1e0	-1.097e+00	0.7796	581.0	7.69%	3116.6	7.55%
dof42(C2C2dof)/col-dof42-DAP-Seq(GSE60143)/Homer	AAAAAGGC	1e0	-1.067e+00	0.7992	257.0	3.40%	1367.0	3.31%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-1.052e+00	0.8087	31.0	0.41%	156.3	0.38%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-1.048e+00	0.8099	87.0	1.15%	454.2	1.10%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-1.047e+00	0.8099	41.0	0.54%	210.0	0.51%
At5g29000(G2like)/col-At5g29000-DAP-Seq(GSE60143)/Homer	RGAATATTCYHH	1e0	-1.045e+00	0.8099	75.0	0.99%	390.8	0.95%
bHLH74(bHLH)/col-bHLH74-DAP-Seq(GSE60143)/Homer	DRATCACGTGAB	1e0	-1.044e+00	0.8099	260.0	3.44%	1385.7	3.36%
MYB55(MYB)/colamp-MYB55-DAP-Seq(GSE60143)/Homer	YACCWAMC	1e0	-1.029e+00	0.8179	433.0	5.73%	2322.6	5.63%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e0	-1.002e+00	0.8376	1498.0	19.83%	8112.9	19.67%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-9.929e-01	0.8435	88.0	1.16%	462.1	1.12%
AT5G02460(C2C2dof)/col-AT5G02460-DAP-Seq(GSE60143)/Homer	CHCCTTTT	1e0	-9.751e-01	0.8565	862.0	11.41%	4657.2	11.29%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-9.745e-01	0.8565	99.0	1.31%	522.7	1.27%
HDG7(HB)/col-HDG7-DAP-Seq(GSE60143)/Homer	WGCATTTAATGC	1e0	-9.624e-01	0.8632	62.0	0.82%	324.9	0.79%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-9.408e-01	0.8799	1783.0	23.60%	9676.7	23.46%
ANAC071(NAC)/col-ANAC071-DAP-Seq(GSE60143)/Homer	DNCKTNDNNNHNAAG	1e0	-9.320e-01	0.8855	314.0	4.16%	1687.1	4.09%
IDD2(C2H2)/colamp-IDD2-DAP-Seq(GSE60143)/Homer	HAVAAAAMGACAAAA	1e0	-9.260e-01	0.8887	41.0	0.54%	213.6	0.52%
RAP21(AP2EREBP)/colamp-RAP21-DAP-Seq(GSE60143)/Homer	BCACCGACAHNN	1e0	-9.224e-01	0.8897	135.0	1.79%	720.0	1.75%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-9.159e-01	0.8934	258.0	3.41%	1385.6	3.36%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-9.153e-01	0.8934	62.0	0.82%	326.5	0.79%
VIP1(bZIP)/col-VIP1-DAP-Seq(GSE60143)/Homer	NTTGACAGCTGTCAN	1e0	-9.081e-01	0.8960	95.0	1.26%	504.0	1.22%
HAT1(Homeobox)/col-HAT1-DAP-Seq(GSE60143)/Homer	SCAATCATTGNN	1e0	-9.076e-01	0.8960	42.0	0.56%	219.5	0.53%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-8.981e-01	0.9006	14.0	0.19%	70.7	0.17%
ATY13(MYB)/col-ATY13-DAP-Seq(GSE60143)/Homer	YYYAACYRHH	1e0	-8.966e-01	0.9006	1727.0	22.86%	9380.2	22.74%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e0	-8.947e-01	0.9006	741.0	9.81%	4011.4	9.72%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-8.817e-01	0.9090	384.0	5.08%	2072.9	5.02%
DDF2(AP2EREBP)/col-DDF2-DAP-Seq(GSE60143)/Homer	GATGTCGRCR	1e0	-8.669e-01	0.9204	27.0	0.36%	140.7	0.34%
Replumless(BLH)/Arabidopsis-RPL.GFP-ChIP-Seq(GSE78727)/Homer	HGTCWHATCA	1e0	-8.553e-01	0.9289	414.0	5.48%	2238.8	5.43%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	-8.548e-01	0.9289	3.0	0.04%	13.0	0.03%
bZIP42(bZIP)/colamp-bZIP42-DAP-Seq(GSE60143)/Homer	GCCACGTCAGCA	1e0	-8.548e-01	0.9289	3.0	0.04%	13.9	0.03%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-8.495e-01	0.9289	1401.0	18.54%	7613.9	18.46%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-8.479e-01	0.9289	396.0	5.24%	2141.8	5.19%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-8.382e-01	0.9339	216.0	2.86%	1164.1	2.82%
MYB30(MYB)/colamp-MYB30-DAP-Seq(GSE60143)/Homer	AGGTAGTTGG	1e0	-8.372e-01	0.9339	416.0	5.51%	2251.4	5.46%
AT1G19040(NAC)/col-AT1G19040-DAP-Seq(GSE60143)/Homer	CTTGNDNHNCAAGYW	1e0	-8.322e-01	0.9351	40.0	0.53%	211.3	0.51%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-8.285e-01	0.9363	400.0	5.29%	2165.1	5.25%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-8.248e-01	0.9377	148.0	1.96%	797.0	1.93%
LOB(LOBAS2)/col-LOB-DAP-Seq(GSE60143)/Homer	CGCCGKAWWTTHCGS	1e0	-8.046e-01	0.9546	522.0	6.91%	2832.3	6.87%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e0	-7.885e-01	0.9678	31.0	0.41%	164.5	0.40%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-7.800e-01	0.9738	145.0	1.92%	783.1	1.90%
AS2(LOBAS2)/col-AS2-DAP-Seq(GSE60143)/Homer	CCGDAAWWHMCGSCG	1e0	-7.738e-01	0.9776	237.0	3.14%	1284.8	3.11%
AT2G31460(REMB3)/col-AT2G31460-DAP-Seq(GSE60143)/Homer	WNWARWDGAAATGAT	1e0	-7.672e-01	0.9819	120.0	1.59%	648.0	1.57%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e0	-7.646e-01	0.9822	235.0	3.11%	1274.2	3.09%
MYB58(MYB)/colamp-MYB58-DAP-Seq(GSE60143)/Homer	YYYACCWACC	1e0	-7.619e-01	0.9826	362.0	4.79%	1966.5	4.77%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-7.495e-01	0.9926	3.0	0.04%	14.0	0.03%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-7.474e-01	0.9926	92.0	1.22%	497.6	1.21%
KAN2(G2like)/colamp-KAN2-DAP-Seq(GSE60143)/Homer	ATATTCTY	1e0	-7.452e-01	0.9926	444.0	5.88%	2415.7	5.86%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-7.382e-01	0.9970	187.0	2.47%	1015.5	2.46%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-7.366e-01	0.9970	95.0	1.26%	514.4	1.25%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-7.363e-01	0.9970	52.0	0.69%	280.1	0.68%
AT2G28810(C2C2dof)/colamp-AT2G28810-DAP-Seq(GSE60143)/Homer	VAAAAAGTWA	1e0	-7.360e-01	0.9970	1011.0	13.38%	5509.4	13.36%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e0	-7.240e-01	1.0000	182.0	2.41%	989.1	2.40%
ANAC092(NAC)/colamp-ANAC092-DAP-Seq(GSE60143)/Homer	WRCKTGWNNNWCAMG	1e0	-7.161e-01	1.0000	154.0	2.04%	837.4	2.03%
MYB99(MYB)/colamp-MYB99-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e0	-7.045e-01	1.0000	362.0	4.79%	1973.0	4.78%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-6.992e-01	1.0000	199.0	2.63%	1084.9	2.63%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-6.989e-01	1.0000	367.0	4.86%	2001.9	4.85%
AT3G09735(S1Falike)/col-AT3G09735-DAP-Seq(GSE60143)/Homer	TTCTAGAANMTTCTA	1e0	-6.847e-01	1.0000	118.0	1.56%	643.3	1.56%
ATHB7(Homeobox)/col-ATHB7-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-6.797e-01	1.0000	182.0	2.41%	993.3	2.41%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-6.769e-01	1.0000	48.0	0.64%	261.5	0.63%
AT2G01818(PLATZ)/col-AT2G01818-DAP-Seq(GSE60143)/Homer	TCTAGAABSTTC	1e0	-6.707e-01	1.0000	41.0	0.54%	223.9	0.54%
NST1(NAC)/colamp-NST1-DAP-Seq(GSE60143)/Homer	WRCTTRWWNWWYAAG	1e0	-6.695e-01	1.0000	279.0	3.69%	1524.1	3.69%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-6.695e-01	1.0000	43.0	0.57%	234.5	0.57%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-6.658e-01	1.0000	291.0	3.85%	1590.6	3.86%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-6.618e-01	1.0000	172.0	2.28%	940.9	2.28%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-6.609e-01	1.0000	322.0	4.26%	1760.6	4.27%
ATY19(MYB)/col-ATY19-DAP-Seq(GSE60143)/Homer	YYCACCWACCAT	1e0	-6.434e-01	1.0000	264.0	3.49%	1445.6	3.50%
SeqBias: CA-repeat	CACACACACA	1e0	-6.336e-01	1.0000	2857.0	37.81%	15613.6	37.85%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-6.236e-01	1.0000	4.0	0.05%	21.4	0.05%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-6.220e-01	1.0000	588.0	7.78%	3220.8	7.81%
RKD2(RWPRK)/colamp-RKD2-DAP-Seq(GSE60143)/Homer	GACKTTTCRDCTTCC	1e0	-6.201e-01	1.0000	292.0	3.86%	1602.0	3.88%
ANAC011(NAC)/col-ANAC011-DAP-Seq(GSE60143)/Homer	TDCTTGYRNNDCAAG	1e0	-6.198e-01	1.0000	118.0	1.56%	648.8	1.57%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-6.194e-01	1.0000	147.0	1.95%	807.1	1.96%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-6.189e-01	1.0000	353.0	4.67%	1935.2	4.69%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-6.180e-01	1.0000	11.0	0.15%	60.2	0.15%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-6.163e-01	1.0000	38.0	0.50%	209.1	0.51%
ANAC070(NAC)/colamp-ANAC070-DAP-Seq(GSE60143)/Homer	CTTRHDNHNBAAGHW	1e0	-6.107e-01	1.0000	395.0	5.23%	2166.4	5.25%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-6.018e-01	1.0000	623.0	8.25%	3415.9	8.28%
At2g03500(G2like)/col-At2g03500-DAP-Seq(GSE60143)/Homer	WWAGAATATTCT	1e0	-5.986e-01	1.0000	62.0	0.82%	342.2	0.83%
ATHB13(Homeobox)/col-ATHB13-DAP-Seq(GSE60143)/Homer	CAATAATT	1e0	-5.982e-01	1.0000	347.0	4.59%	1905.5	4.62%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-5.947e-01	1.0000	19.0	0.25%	106.0	0.26%
At3g45610(C2C2dof)/col-At3g45610-DAP-Seq(GSE60143)/Homer	TWACTTTTTS	1e0	-5.945e-01	1.0000	599.0	7.93%	3285.8	7.97%
REM19(REM)/colamp-REM19-DAP-Seq(GSE60143)/Homer	AAAAAAAA	1e0	-5.911e-01	1.0000	79.0	1.05%	436.8	1.06%
CRC(C2C2YABBY)/col-CRC-DAP-Seq(GSE60143)/Homer	TWATSATA	1e0	-5.888e-01	1.0000	338.0	4.47%	1857.7	4.50%
VND2(NAC)/col-VND2-DAP-Seq(GSE60143)/Homer	DNCKTNNNNNNNAAG	1e0	-5.758e-01	1.0000	328.0	4.34%	1804.7	4.37%
SND3(NAC)/col-SND3-DAP-Seq(GSE60143)/Homer	CTTNHNNNDNAAGNH	1e0	-5.752e-01	1.0000	243.0	3.22%	1338.1	3.24%
ERF38(AP2EREBP)/col-ERF38-DAP-Seq(GSE60143)/Homer	CACCGACA	1e0	-5.670e-01	1.0000	469.0	6.21%	2578.6	6.25%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-5.655e-01	1.0000	19.0	0.25%	106.1	0.26%
MYB96(MYB)/colamp-MYB96-DAP-Seq(GSE60143)/Homer	WGGTRGTTGG	1e0	-5.631e-01	1.0000	314.0	4.16%	1729.7	4.19%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-5.612e-01	1.0000	361.0	4.78%	1987.7	4.82%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-5.594e-01	1.0000	7.0	0.09%	39.3	0.10%
ATHB6(Homeobox)/Arabidopsis-HB6-ChIP-Seq(GSE80564)/Homer	CAATNATTBN	1e0	-5.572e-01	1.0000	208.0	2.75%	1148.6	2.78%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-5.556e-01	1.0000	438.0	5.80%	2410.2	5.84%
AtIDD11(C2H2)/colamp-AtIDD11-DAP-Seq(GSE60143)/Homer	TTTGTCGTTT	1e0	-5.478e-01	1.0000	114.0	1.51%	632.1	1.53%
SND2(NAC)/colamp-SND2-DAP-Seq(GSE60143)/Homer	CTTVWNNNWBAAGNW	1e0	-5.436e-01	1.0000	223.0	2.95%	1232.5	2.99%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-5.428e-01	1.0000	63.0	0.83%	351.9	0.85%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-5.400e-01	1.0000	287.0	3.80%	1584.3	3.84%
At1g76110(ARID)/colamp-At1g76110-DAP-Seq(GSE60143)/Homer	ATTTAATG	1e0	-5.390e-01	1.0000	236.0	3.12%	1304.5	3.16%
dof24(C2C2dof)/col-dof24-DAP-Seq(GSE60143)/Homer	TWMCTTTTTG	1e0	-5.324e-01	1.0000	918.0	12.15%	5044.8	12.23%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e0	-5.309e-01	1.0000	2055.0	27.20%	11264.7	27.31%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-5.295e-01	1.0000	524.0	6.93%	2886.4	7.00%
OBP1(C2C2dof)/col-OBP1-DAP-Seq(GSE60143)/Homer	NHHACTTTWT	1e0	-5.275e-01	1.0000	1249.0	16.53%	6858.0	16.62%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-5.246e-01	1.0000	307.0	4.06%	1696.4	4.11%
VND1(NAC)/col-VND1-DAP-Seq(GSE60143)/Homer	CTTRWDNHWYAAGYW	1e0	-5.190e-01	1.0000	257.0	3.40%	1422.4	3.45%
AT1G01250(AP2EREBP)/col-AT1G01250-DAP-Seq(GSE60143)/Homer	YCACCGACAHTW	1e0	-5.184e-01	1.0000	73.0	0.97%	408.4	0.99%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-5.163e-01	1.0000	21.0	0.28%	119.7	0.29%
dof45(C2C2dof)/col-dof45-DAP-Seq(GSE60143)/Homer	NVAWAAAGTN	1e0	-5.160e-01	1.0000	1040.0	13.76%	5716.6	13.86%
ANAC103(NAC)/col-ANAC103-DAP-Seq(GSE60143)/Homer	AACTTGNWNWNCAAG	1e0	-5.148e-01	1.0000	118.0	1.56%	657.3	1.59%
AT1G04880(ARID)/colamp-AT1G04880-DAP-Seq(GSE60143)/Homer	AAACTATATADTATA	1e0	-5.116e-01	1.0000	24.0	0.32%	136.3	0.33%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-5.091e-01	1.0000	642.0	8.50%	3537.6	8.58%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-5.034e-01	1.0000	916.0	12.12%	5040.6	12.22%
ANL2(HB)/col-ANL2-DAP-Seq(GSE60143)/Homer	CATTAATTGC	1e0	-5.018e-01	1.0000	199.0	2.63%	1105.9	2.68%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-5.010e-01	1.0000	189.0	2.50%	1050.4	2.55%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-5.003e-01	1.0000	248.0	3.28%	1375.4	3.33%
PLT1(AP2EREBP)/colamp-PLT1-DAP-Seq(GSE60143)/Homer	GCACGAWTYCCGAGG	1e0	-4.931e-01	1.0000	36.0	0.48%	204.3	0.50%
AT3G12130(C3H)/colamp-AT3G12130-DAP-Seq(GSE60143)/Homer	TMACTTTTTV	1e0	-4.856e-01	1.0000	1057.0	13.99%	5817.6	14.10%
AIL7(AP2EREBP)/colamp-AIL7-DAP-Seq(GSE60143)/Homer	KCACRAWTYYCGAGG	1e0	-4.794e-01	1.0000	184.0	2.44%	1025.6	2.49%
AT3G51470(DBP)/col-AT3G51470-DAP-Seq(GSE60143)/Homer	TTWHGGTGCACC	1e0	-4.741e-01	1.0000	785.0	10.39%	4329.1	10.49%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e0	-4.719e-01	1.0000	429.0	5.68%	2375.4	5.76%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-4.668e-01	1.0000	239.0	3.16%	1330.2	3.22%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-4.663e-01	1.0000	24.0	0.32%	138.9	0.34%
AT5G60130(ABI3VP1)/col-AT5G60130-DAP-Seq(GSE60143)/Homer	WTTYTAAGVAAA	1e0	-4.534e-01	1.0000	699.0	9.25%	3862.1	9.36%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-4.526e-01	1.0000	34.0	0.45%	195.1	0.47%
ANAC058(NAC)/col-ANAC058-DAP-Seq(GSE60143)/Homer	TWCTTGTDNNACAAG	1e0	-4.480e-01	1.0000	188.0	2.49%	1052.0	2.55%
CUC2(NAC)/colamp-CUC2-DAP-Seq(GSE60143)/Homer	TRCKTGTNNNWCAMG	1e0	-4.474e-01	1.0000	117.0	1.55%	658.5	1.60%
MYB67(MYB)/col-MYB67-DAP-Seq(GSE60143)/Homer	YYYACCTAAC	1e0	-4.458e-01	1.0000	356.0	4.71%	1978.3	4.80%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-4.319e-01	1.0000	948.0	12.55%	5234.9	12.69%
M1BP(Zf)/S2R+-M1BP-ChIP-Seq(GSE49842)/Homer	CAGTGTGACCGT	1e0	-4.259e-01	1.0000	113.0	1.50%	638.3	1.55%
MYB17(MYB)/colamp-MYB17-DAP-Seq(GSE60143)/Homer	GGTAGGTGRG	1e0	-4.241e-01	1.0000	199.0	2.63%	1115.8	2.70%
ANAC013(NAC)/col-ANAC013-DAP-Seq(GSE60143)/Homer	CTTGNNNNNCAAGNA	1e0	-4.223e-01	1.0000	154.0	2.04%	866.5	2.10%
At3g12730(G2like)/colamp-At3g12730-DAP-Seq(GSE60143)/Homer	AAGATTCT	1e0	-4.174e-01	1.0000	444.0	5.88%	2468.3	5.98%
CBF4(AP2EREBP)/colamp-CBF4-DAP-Seq(GSE60143)/Homer	NRCCGACDWNNNNNN	1e0	-4.145e-01	1.0000	516.0	6.83%	2865.2	6.95%
HAT5(Homeobox)/colamp-HAT5-DAP-Seq(GSE60143)/Homer	DCAATWATTG	1e0	-4.119e-01	1.0000	35.0	0.46%	203.7	0.49%
PTF1(TCP)/colamp-PTF1-DAP-Seq(GSE60143)/Homer	RDDGGGACCACA	1e0	-4.099e-01	1.0000	41.0	0.54%	237.5	0.58%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e0	-4.094e-01	1.0000	301.0	3.98%	1681.5	4.08%
ANAC017(NAC)/colamp-ANAC017-DAP-Seq(GSE60143)/Homer	TMCTTGNNNNNCAAG	1e0	-4.085e-01	1.0000	44.0	0.58%	254.4	0.62%
bZIP44(bZIP)/colamp-bZIP44-DAP-Seq(GSE60143)/Homer	NDTGCCACGTCAGCH	1e0	-4.067e-01	1.0000	12.0	0.16%	72.6	0.18%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-4.002e-01	1.0000	40.0	0.53%	232.4	0.56%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-3.990e-01	1.0000	4.0	0.05%	25.5	0.06%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-3.989e-01	1.0000	122.0	1.61%	691.8	1.68%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-3.983e-01	1.0000	174.0	2.30%	980.3	2.38%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-3.980e-01	1.0000	347.0	4.59%	1937.1	4.70%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-3.973e-01	1.0000	152.0	2.01%	858.1	2.08%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-3.933e-01	1.0000	135.0	1.79%	764.7	1.85%
SMB(NAC)/colamp-SMB-DAP-Seq(GSE60143)/Homer	CTTVNNNNDBAAGHW	1e0	-3.900e-01	1.0000	325.0	4.30%	1817.1	4.40%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e0	-3.829e-01	1.0000	430.0	5.69%	2398.7	5.81%
AtHB32(ZFHD)/col200-AtHB32-DAP-Seq(GSE60143)/Homer	CGAATTAT	1e0	-3.774e-01	1.0000	420.0	5.56%	2344.4	5.68%
GT1(Trihelix)/col-GT1-DAP-Seq(GSE60143)/Homer	TTAACCATGGTTAAD	1e0	-3.747e-01	1.0000	2.0	0.03%	13.3	0.03%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-3.725e-01	1.0000	270.0	3.57%	1517.0	3.68%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-3.717e-01	1.0000	435.0	5.76%	2428.2	5.89%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-3.692e-01	1.0000	84.0	1.11%	482.4	1.17%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e0	-3.676e-01	1.0000	926.0	12.26%	5132.9	12.44%
COG1(C2C2dof)/col-COG1-DAP-Seq(GSE60143)/Homer	DAAAAAGTGA	1e0	-3.646e-01	1.0000	564.0	7.46%	3141.9	7.62%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-3.570e-01	1.0000	682.0	9.03%	3793.3	9.20%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	-3.565e-01	1.0000	4.0	0.05%	26.3	0.06%
ANAC053(NAC)/colamp-ANAC053-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e0	-3.557e-01	1.0000	174.0	2.30%	986.5	2.39%
BBX31(Orphan)/col-BBX31-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e0	-3.540e-01	1.0000	639.0	8.46%	3557.0	8.62%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-3.530e-01	1.0000	147.0	1.95%	836.4	2.03%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-3.476e-01	1.0000	63.0	0.83%	366.6	0.89%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-3.429e-01	1.0000	478.0	6.33%	2672.2	6.48%
IDD7(C2H2)/col-IDD7-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTN	1e0	-3.411e-01	1.0000	117.0	1.55%	670.7	1.63%
ANAC020(NAC)/col-ANAC020-DAP-Seq(GSE60143)/Homer	DVCKTGHNNNDCAAG	1e0	-3.384e-01	1.0000	219.0	2.90%	1239.6	3.01%
DEAR3(AP2EREBP)/colamp-DEAR3-DAP-Seq(GSE60143)/Homer	BCACCGACAWNNNNN	1e0	-3.330e-01	1.0000	212.0	2.81%	1201.8	2.91%
ATHB18(Homeobox)/colamp-ATHB18-DAP-Seq(GSE60143)/Homer	YCAATSATTG	1e0	-3.317e-01	1.0000	43.0	0.57%	254.6	0.62%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-3.302e-01	1.0000	56.0	0.74%	328.9	0.80%
MYB40(MYB)/col-MYB40-DAP-Seq(GSE60143)/Homer	TGGTAGGTRARA	1e0	-3.275e-01	1.0000	101.0	1.34%	582.4	1.41%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-3.257e-01	1.0000	907.0	12.00%	5041.2	12.22%
ATHB33(ZFHD)/col-ATHB33-DAP-Seq(GSE60143)/Homer	NGTRATTAAK	1e0	-3.213e-01	1.0000	502.0	6.64%	2810.8	6.81%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-3.129e-01	1.0000	460.0	6.09%	2580.1	6.25%
bHLH130(bHLH)/col-bHLH130-DAP-Seq(GSE60143)/Homer	GCAACTTG	1e0	-3.120e-01	1.0000	232.0	3.07%	1316.1	3.19%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-3.083e-01	1.0000	128.0	1.69%	736.7	1.79%
MYB62(MYB)/colamp-MYB62-DAP-Seq(GSE60143)/Homer	NTACCTAACT	1e0	-3.038e-01	1.0000	533.0	7.05%	2986.7	7.24%
At5g05790(MYBrelated)/col-At5g05790-DAP-Seq(GSE60143)/Homer	AYCTTATC	1e0	-3.001e-01	1.0000	283.0	3.75%	1602.1	3.88%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-2.957e-01	1.0000	672.0	8.89%	3756.4	9.11%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e0	-2.944e-01	1.0000	54.0	0.71%	320.7	0.78%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-2.939e-01	1.0000	270.0	3.57%	1531.7	3.71%
CUC3(NAC)/col-CUC3-DAP-Seq(GSE60143)/Homer	TRCKTGWNNNACAMG	1e0	-2.933e-01	1.0000	110.0	1.46%	637.2	1.54%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-2.796e-01	1.0000	20.0	0.26%	125.8	0.30%
ANAC057(NAC)/colamp-ANAC057-DAP-Seq(GSE60143)/Homer	DVCKTGNNNNNCAMG	1e0	-2.792e-01	1.0000	275.0	3.64%	1563.0	3.79%
dof43(C2C2dof)/colamp-dof43-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e0	-2.778e-01	1.0000	564.0	7.46%	3165.9	7.67%
NAC2(NAC)/colamp-NAC2-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e0	-2.776e-01	1.0000	217.0	2.87%	1239.8	3.01%
AGL6(MADS)/col-AGL6-DAP-Seq(GSE60143)/Homer	TTWCCWWAWWDGGWA	1e0	-2.771e-01	1.0000	33.0	0.44%	201.4	0.49%
IDD4(C2H2)/col-IDD4-DAP-Seq(GSE60143)/Homer	TTTGTCTTTWTB	1e0	-2.766e-01	1.0000	274.0	3.63%	1558.0	3.78%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e0	-2.707e-01	1.0000	127.0	1.68%	737.0	1.79%
AT3G58630(Trihelix)/col-AT3G58630-DAP-Seq(GSE60143)/Homer	TCTCCGGCGA	1e0	-2.706e-01	1.0000	230.0	3.04%	1313.7	3.18%
AT5G45580(G2like)/colamp-AT5G45580-DAP-Seq(GSE60143)/Homer	ADRGAATCTH	1e0	-2.691e-01	1.0000	488.0	6.46%	2747.9	6.66%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-2.684e-01	1.0000	1059.0	14.02%	5899.9	14.30%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-2.676e-01	1.0000	53.0	0.70%	317.0	0.77%
DEAR5(AP2EREBP)/col-DEAR5-DAP-Seq(GSE60143)/Homer	NDWTGTCGGTGRWDN	1e0	-2.643e-01	1.0000	127.0	1.68%	737.7	1.79%
TCP3(TCP)/colamp-TCP3-DAP-Seq(GSE60143)/Homer	WGTGGTCCCAAHWWW	1e0	-2.640e-01	1.0000	78.0	1.03%	460.3	1.12%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-2.521e-01	1.0000	1343.0	17.77%	7469.8	18.11%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-2.492e-01	1.0000	303.0	4.01%	1725.0	4.18%
AGL13(MADS)/col-AGL13-DAP-Seq(GSE60143)/Homer	TWCCAWWTWTGGWAA	1e0	-2.474e-01	1.0000	10.0	0.13%	67.1	0.16%
ANAC087(NAC)/col-ANAC087-DAP-Seq(GSE60143)/Homer	WVCKTGHNNNWCAMG	1e0	-2.453e-01	1.0000	116.0	1.54%	678.1	1.64%
VND4(NAC)/colamp-VND4-DAP-Seq(GSE60143)/Homer	WRCTTGWANWWCAAG	1e0	-2.450e-01	1.0000	241.0	3.19%	1380.2	3.35%
NTM2(NAC)/col-NTM2-DAP-Seq(GSE60143)/Homer	CTTRTNNNAYAAGBH	1e0	-2.380e-01	1.0000	169.0	2.24%	978.2	2.37%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-2.353e-01	1.0000	2.0	0.03%	16.2	0.04%
ANAC075(NAC)/col-ANAC075-DAP-Seq(GSE60143)/Homer	CTTSWWNWWSAAGYT	1e0	-2.353e-01	1.0000	115.0	1.52%	674.2	1.63%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e0	-2.321e-01	1.0000	458.0	6.06%	2592.2	6.28%
ATHB25(ZFHD)/colamp-ATHB25-DAP-Seq(GSE60143)/Homer	TAATTAVB	1e0	-2.288e-01	1.0000	397.0	5.25%	2254.6	5.47%
FAR1(FAR1)/col-FAR1-DAP-Seq(GSE60143)/Homer	TKNNNYYCACGCGCY	1e0	-2.284e-01	1.0000	190.0	2.51%	1098.9	2.66%
AT5G66940(C2C2dof)/col-AT5G66940-DAP-Seq(GSE60143)/Homer	NNHACTTTWT	1e0	-2.260e-01	1.0000	830.0	10.98%	4654.7	11.28%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-2.159e-01	1.0000	5.0	0.07%	37.7	0.09%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-2.127e-01	1.0000	63.0	0.83%	381.0	0.92%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-2.090e-01	1.0000	16.0	0.21%	106.3	0.26%
ATHB34(ZFHD)/colamp-ATHB34-DAP-Seq(GSE60143)/Homer	TRATTARS	1e0	-2.080e-01	1.0000	291.0	3.85%	1669.5	4.05%
At1g19000(MYBrelated)/colamp-At1g19000-DAP-Seq(GSE60143)/Homer	WWTGGATAADDT	1e0	-2.039e-01	1.0000	231.0	3.06%	1334.3	3.23%
At5g58900(MYBrelated)/colamp-At5g58900-DAP-Seq(GSE60143)/Homer	WWWTYTTATCTWWWW	1e0	-2.027e-01	1.0000	421.0	5.57%	2396.6	5.81%
AT4G27900(C2C2COlike)/col-AT4G27900-DAP-Seq(GSE60143)/Homer	TCTCVACCGTTSATT	1e0	-2.018e-01	1.0000	2.0	0.03%	17.5	0.04%
bZIP28(bZIP)/col-bZIP28-DAP-Seq(GSE60143)/Homer	TGCCACGTSABH	1e0	-1.995e-01	1.0000	161.0	2.13%	941.3	2.28%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-1.980e-01	1.0000	1378.0	18.24%	7690.2	18.64%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-1.959e-01	1.0000	16.0	0.21%	107.5	0.26%
MYB107(MYB)/col-MYB107-DAP-Seq(GSE60143)/Homer	RGTWGGTRRR	1e0	-1.954e-01	1.0000	617.0	8.17%	3488.1	8.46%
AT4G00250(GeBP)/col-AT4G00250-DAP-Seq(GSE60143)/Homer	WDTGGATAAKRT	1e0	-1.937e-01	1.0000	159.0	2.10%	931.7	2.26%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.909e-01	1.0000	1180.0	15.62%	6603.5	16.01%
MYB27(MYB)/colamp-MYB27-DAP-Seq(GSE60143)/Homer	TACCTAACWT	1e0	-1.896e-01	1.0000	36.0	0.48%	227.3	0.55%
ATHB5(HB)/colamp-ATHB5-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-1.890e-01	1.0000	257.0	3.40%	1484.4	3.60%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-1.879e-01	1.0000	160.0	2.12%	938.3	2.27%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-1.878e-01	1.0000	301.0	3.98%	1731.0	4.20%
MYB121(MYB)/col-MYB121-DAP-Seq(GSE60143)/Homer	YNTACCTAACWW	1e0	-1.864e-01	1.0000	83.0	1.10%	500.1	1.21%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-1.851e-01	1.0000	8.0	0.11%	58.9	0.14%
ATHB6(Homeobox)/col-ATHB6-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-1.839e-01	1.0000	346.0	4.58%	1984.8	4.81%
 Ik-1	NHTTGGGAATRCC	1e0	-1.832e-01	1.0000	7556.0	100.00%	41252.6	100.00%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-1.801e-01	1.0000	3.0	0.04%	25.3	0.06%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-1.800e-01	1.0000	14.0	0.19%	96.6	0.23%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-1.781e-01	1.0000	53.0	0.70%	328.8	0.80%
HSFA6B(HSF)/colamp-HSFA6B-DAP-Seq(GSE60143)/Homer	NTTCTAGAANHTTCT	1e0	-1.777e-01	1.0000	140.0	1.85%	827.0	2.00%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-1.770e-01	1.0000	202.0	2.67%	1178.0	2.86%
At3g11280(MYBrelated)/col-At3g11280-DAP-Seq(GSE60143)/Homer	GATAAGRT	1e0	-1.759e-01	1.0000	262.0	3.47%	1516.7	3.68%
VND3(NAC)/colamp-VND3-DAP-Seq(GSE60143)/Homer	TRCTTGWDNHWCAAG	1e0	-1.728e-01	1.0000	219.0	2.90%	1275.0	3.09%
ANAC016(NAC)/col-ANAC016-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAMG	1e0	-1.708e-01	1.0000	325.0	4.30%	1871.5	4.54%
MYB93(MYB)/colamp-MYB93-DAP-Seq(GSE60143)/Homer	GGTAGGTGRD	1e0	-1.705e-01	1.0000	411.0	5.44%	2352.5	5.70%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-1.686e-01	1.0000	26.0	0.34%	170.8	0.41%
AT2G38300(G2like)/col-AT2G38300-DAP-Seq(GSE60143)/Homer	ADRGAATGTT	1e0	-1.660e-01	1.0000	396.0	5.24%	2270.9	5.50%
MYB61(MYB)/colamp-MYB61-DAP-Seq(GSE60143)/Homer	HCYACCTACC	1e0	-1.645e-01	1.0000	569.0	7.53%	3235.3	7.84%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e0	-1.638e-01	1.0000	415.0	5.49%	2377.7	5.76%
AT2G33550(Trihelix)/colamp-AT2G33550-DAP-Seq(GSE60143)/Homer	TTTAAGGGCAYTTTT	1e0	-1.591e-01	1.0000	708.0	9.37%	4010.5	9.72%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-1.541e-01	1.0000	189.0	2.50%	1112.0	2.70%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e0	-1.537e-01	1.0000	478.0	6.33%	2733.5	6.63%
At5g08520(MYBrelated)/colamp-At5g08520-DAP-Seq(GSE60143)/Homer	ADBSTTATCY	1e0	-1.532e-01	1.0000	354.0	4.69%	2040.3	4.95%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.525e-01	1.0000	6.0	0.08%	47.9	0.12%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e0	-1.496e-01	1.0000	345.0	4.57%	1991.9	4.83%
SGR5(C2H2)/colamp-SGR5-DAP-Seq(GSE60143)/Homer	TTTGTCTTTTTT	1e0	-1.487e-01	1.0000	223.0	2.95%	1305.3	3.16%
AT3G10580(MYBrelated)/colamp-AT3G10580-DAP-Seq(GSE60143)/Homer	TACCTAACWNHW	1e0	-1.429e-01	1.0000	102.0	1.35%	618.2	1.50%
CUC1(NAC)/col-CUC1-DAP-Seq(GSE60143)/Homer	TACTTGTNNNACAAG	1e0	-1.424e-01	1.0000	136.0	1.80%	813.2	1.97%
At2g41835(C2H2)/col-At2g41835-DAP-Seq(GSE60143)/Homer	TTTGAAAA	1e0	-1.419e-01	1.0000	150.0	1.99%	893.8	2.17%
GBF6(bZIP)/colamp-GBF6-DAP-Seq(GSE60143)/Homer	WWTGMCACGTCABCW	1e0	-1.408e-01	1.0000	104.0	1.38%	630.2	1.53%
WRKY47(WRKY)/colamp-WRKY47-DAP-Seq(GSE60143)/Homer	WAAGTCAACGBT	1e0	-1.371e-01	1.0000	50.0	0.66%	317.0	0.77%
AT1G69570(C2C2dof)/col-AT1G69570-DAP-Seq(GSE60143)/Homer	WAAAAGTGHH	1e0	-1.367e-01	1.0000	495.0	6.55%	2836.0	6.87%
ANAC050(NAC)/colamp-ANAC050-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAAG	1e0	-1.327e-01	1.0000	185.0	2.45%	1095.9	2.66%
TCP17(TCP)/col-TCP17-DAP-Seq(GSE60143)/Homer	GTGGTCCCCA	1e0	-1.325e-01	1.0000	13.0	0.17%	94.8	0.23%
bHLH80(bHLH)/col-bHLH80-DAP-Seq(GSE60143)/Homer	NNNNDCAASTTGHNN	1e0	-1.316e-01	1.0000	296.0	3.92%	1724.0	4.18%
HSF3(HSF)/colamp-HSF3-DAP-Seq(GSE60143)/Homer	NTTCTAGAAKCTTCT	1e0	-1.311e-01	1.0000	269.0	3.56%	1571.3	3.81%
ZML2(C2C2gata)/col-ZML2-DAP-Seq(GSE60143)/Homer	CATCATCATC	1e0	-1.289e-01	1.0000	75.0	0.99%	466.0	1.13%
AT5G61620(MYBrelated)/colamp-AT5G61620-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e0	-1.286e-01	1.0000	449.0	5.94%	2583.9	6.26%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-1.285e-01	1.0000	337.0	4.46%	1955.2	4.74%
At1g74840(MYBrelated)/col100-At1g74840-DAP-Seq(GSE60143)/Homer	YHTTATCCAWWT	1e0	-1.284e-01	1.0000	202.0	2.67%	1193.3	2.89%
ATHB23(ZFHD)/col-ATHB23-DAP-Seq(GSE60143)/Homer	HTAATTARNN	1e0	-1.246e-01	1.0000	323.0	4.27%	1878.3	4.55%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-1.244e-01	1.0000	307.0	4.06%	1788.2	4.33%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-1.242e-01	1.0000	81.0	1.07%	501.6	1.22%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.228e-01	1.0000	16.0	0.21%	114.9	0.28%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-1.221e-01	1.0000	58.0	0.77%	367.5	0.89%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e0	-1.214e-01	1.0000	240.0	3.18%	1411.1	3.42%
LMI1(HB)/colamp-LMI1-DAP-Seq(GSE60143)/Homer	AATTATTG	1e0	-1.177e-01	1.0000	208.0	2.75%	1231.9	2.99%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-1.169e-01	1.0000	17.0	0.22%	121.4	0.29%
At3g04030(G2like)/col-At3g04030-DAP-Seq(GSE60143)/Homer	DRGAATCT	1e0	-1.164e-01	1.0000	246.0	3.26%	1447.1	3.51%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e0	-1.158e-01	1.0000	508.0	6.72%	2920.8	7.08%
BPC6(BBRBPC)/col-BPC6-DAP-Seq(GSE60143)/Homer	YTYTCTCTCTCTCTA	1e0	-1.114e-01	1.0000	4.0	0.05%	36.3	0.09%
NTM1(NAC)/col-NTM1-DAP-Seq(GSE60143)/Homer	ACTTRTARAASAAGT	1e0	-1.106e-01	1.0000	153.0	2.02%	920.1	2.23%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-1.102e-01	1.0000	10.0	0.13%	77.4	0.19%
MYB83(MYB)/colamp-MYB83-DAP-Seq(GSE60143)/Homer	CACCAACCWH	1e0	-1.095e-01	1.0000	701.0	9.28%	4001.1	9.70%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-1.085e-01	1.0000	107.0	1.42%	656.2	1.59%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.078e-01	1.0000	393.0	5.20%	2280.1	5.53%
ATHB40(HB)/col-ATHB40-DAP-Seq(GSE60143)/Homer	HCAATWATTG	1e0	-1.075e-01	1.0000	224.0	2.96%	1326.8	3.22%
At1g25550(G2like)/colamp-At1g25550-DAP-Seq(GSE60143)/Homer	NAGATTCY	1e0	-1.067e-01	1.0000	285.0	3.77%	1672.3	4.05%
PLT3(AP2EREBP)/col-PLT3-DAP-Seq(GSE60143)/Homer	GCACGNWTHYCGAGG	1e0	-1.041e-01	1.0000	22.0	0.29%	154.0	0.37%
bHLH34(bHLH)/colamp-bHLH34-DAP-Seq(GSE60143)/Homer	HGWGRHWGACACGTG	1e0	-1.032e-01	1.0000	191.0	2.53%	1140.4	2.76%
At5g47390(MYBrelated)/col-At5g47390-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e0	-1.022e-01	1.0000	388.0	5.13%	2255.3	5.47%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	-1.003e-01	1.0000	57.0	0.75%	366.8	0.89%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-9.956e-02	1.0000	90.0	1.19%	560.8	1.36%
SVP(MADS)/col-SVP-DAP-Seq(GSE60143)/Homer	ANTTWCCHAATTTGG	1e0	-9.906e-02	1.0000	134.0	1.77%	815.8	1.98%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-9.653e-02	1.0000	142.0	1.88%	862.7	2.09%
AT3G52440(C2C2dof)/colamp-AT3G52440-DAP-Seq(GSE60143)/Homer	DTHACTTTTT	1e0	-9.390e-02	1.0000	937.0	12.40%	5326.6	12.91%
AGL15(MADS)/col-AGL15-DAP-Seq(GSE60143)/Homer	TTTCCHWATWDGGAA	1e0	-9.335e-02	1.0000	40.0	0.53%	266.2	0.65%
ATHB21(HB)/colamp-ATHB21-DAP-Seq(GSE60143)/Homer	YCAATWAT	1e0	-9.252e-02	1.0000	113.0	1.50%	696.7	1.69%
AT5G63260(C3H)/col-AT5G63260-DAP-Seq(GSE60143)/Homer	RAAAAAGTRA	1e0	-9.240e-02	1.0000	958.0	12.68%	5444.5	13.20%
WRKY30(WRKY)/colamp-WRKY30-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e0	-9.137e-02	1.0000	61.0	0.81%	392.6	0.95%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-8.979e-02	1.0000	76.0	1.01%	481.8	1.17%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-8.948e-02	1.0000	44.0	0.58%	291.2	0.71%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-8.923e-02	1.0000	906.0	11.99%	5158.5	12.50%
NGA4(ABI3VP1)/col-NGA4-DAP-Seq(GSE60143)/Homer	TKNTCAGGTG	1e0	-8.759e-02	1.0000	1659.0	21.96%	9328.3	22.61%
At5g66730(C2H2)/colamp-At5g66730-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTK	1e0	-8.655e-02	1.0000	76.0	1.01%	482.7	1.17%
WRKY15(WRKY)/col-WRKY15-DAP-Seq(GSE60143)/Homer	VGTTGACTWW	1e0	-8.413e-02	1.0000	214.0	2.83%	1280.4	3.10%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-8.198e-02	1.0000	1306.0	17.28%	7384.4	17.90%
TCP16(TCP)/colamp-TCP16-DAP-Seq(GSE60143)/Homer	GTGGDCCYNNNNNNN	1e0	-8.012e-02	1.0000	289.0	3.82%	1709.9	4.15%
EPR1(MYBrelated)/colamp-EPR1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-7.987e-02	1.0000	100.0	1.32%	625.8	1.52%
LHY1(MYBrelated)/col-LHY1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-7.987e-02	1.0000	100.0	1.32%	625.8	1.52%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-7.876e-02	1.0000	71.0	0.94%	455.9	1.11%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-7.872e-02	1.0000	1049.0	13.88%	5963.5	14.46%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-7.850e-02	1.0000	72.0	0.95%	461.4	1.12%
AGL16(MADS)/col-AGL16-DAP-Seq(GSE60143)/Homer	TWCCHWATWDGGAAA	1e0	-7.744e-02	1.0000	23.0	0.30%	166.0	0.40%
ATHB24(ZFHD)/colamp-ATHB24-DAP-Seq(GSE60143)/Homer	TAATTAAS	1e0	-7.607e-02	1.0000	275.0	3.64%	1632.9	3.96%
bZIP16(bZIP)/colamp-bZIP16-DAP-Seq(GSE60143)/Homer	TGCCACGTGD	1e0	-7.509e-02	1.0000	168.0	2.22%	1021.1	2.48%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e0	-7.473e-02	1.0000	14.0	0.19%	109.0	0.26%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-7.442e-02	1.0000	416.0	5.51%	2431.9	5.90%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-7.322e-02	1.0000	664.0	8.79%	3824.4	9.27%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-7.241e-02	1.0000	84.0	1.11%	534.5	1.30%
AREB3(bZIP)/col-AREB3-DAP-Seq(GSE60143)/Homer	NKGMCACGTGDCMNN	1e0	-7.122e-02	1.0000	168.0	2.22%	1023.4	2.48%
GATA20(C2C2gata)/colamp-GATA20-DAP-Seq(GSE60143)/Homer	TNGATCNDNM	1e0	-7.117e-02	1.0000	749.0	9.91%	4301.1	10.43%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-7.057e-02	1.0000	128.0	1.69%	792.1	1.92%
AT5G56840(MYBrelated)/colamp-AT5G56840-DAP-Seq(GSE60143)/Homer	TGGATAAGGT	1e0	-7.009e-02	1.0000	366.0	4.84%	2153.0	5.22%
STOP1(C2H2)/colamp-STOP1-DAP-Seq(GSE60143)/Homer	DTATCTGGKGRAGGT	1e0	-6.880e-02	1.0000	165.0	2.18%	1007.1	2.44%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-6.845e-02	1.0000	4.0	0.05%	40.3	0.10%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-6.805e-02	1.0000	20.0	0.26%	148.6	0.36%
WRKY46(WRKY)/colamp-WRKY46-DAP-Seq(GSE60143)/Homer	AAAGTCAACGSN	1e0	-6.799e-02	1.0000	12.0	0.16%	96.2	0.23%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e0	-6.685e-02	1.0000	522.0	6.91%	3034.7	7.36%
bZIP53(bZIP)/colamp-bZIP53-DAP-Seq(GSE60143)/Homer	NDNHSACGTGKMNNN	1e0	-6.635e-02	1.0000	175.0	2.32%	1066.5	2.59%
At1g49010(MYBrelated)/col-At1g49010-DAP-Seq(GSE60143)/Homer	RGATAASNTT	1e0	-6.452e-02	1.0000	608.0	8.05%	3520.0	8.53%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-6.423e-02	1.0000	96.0	1.27%	609.0	1.48%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-6.422e-02	1.0000	87.0	1.15%	555.5	1.35%
AT2G28920(ND)/col-AT2G28920-DAP-Seq(GSE60143)/Homer	WAGATATTTWTW	1e0	-6.018e-02	1.0000	66.0	0.87%	433.0	1.05%
HAP3(CCAATHAP3)/col-HAP3-DAP-Seq(GSE60143)/Homer	TGATGGAW	1e0	-5.996e-02	1.0000	130.0	1.72%	809.4	1.96%
AGL63(MADS)/col-AGL63-DAP-Seq(GSE60143)/Homer	TTCCAAWWWTGG	1e0	-5.930e-02	1.0000	253.0	3.35%	1519.0	3.68%
GBF3(bZIP)/Arabidopsis-GBF3-ChIP-Seq(GSE80564)/Homer	TGCCACGTSAYC	1e0	-5.904e-02	1.0000	181.0	2.40%	1105.2	2.68%
bZIP68(bZIP)/col-bZIP68-DAP-Seq(GSE60143)/Homer	WGCCACGTGK	1e0	-5.744e-02	1.0000	206.0	2.73%	1250.8	3.03%
ABF2(bZIP)/col-ABF2-DAP-Seq(GSE60143)/Homer	KGMCACGTGDCMHHH	1e0	-5.567e-02	1.0000	120.0	1.59%	753.3	1.83%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-5.565e-02	1.0000	203.0	2.69%	1234.0	2.99%
WRKY33(WRKY)/col-WRKY33-DAP-Seq(GSE60143)/Homer	CGTTGACYAW	1e0	-5.468e-02	1.0000	176.0	2.33%	1079.2	2.62%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-5.461e-02	1.0000	14.0	0.19%	112.1	0.27%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-5.408e-02	1.0000	159.0	2.10%	981.8	2.38%
bHLH122(bHLH)/col100-bHLH122-DAP-Seq(GSE60143)/Homer	NDDCAASTTGHHNWW	1e0	-5.355e-02	1.0000	251.0	3.32%	1511.2	3.66%
AGL25(MADS)/colamp-AGL25-DAP-Seq(GSE60143)/Homer	TTTCCATWTWTGGAA	1e0	-4.993e-02	1.0000	10.0	0.13%	86.2	0.21%
GATA15(C2C2gata)/col-GATA15-DAP-Seq(GSE60143)/Homer	KATGATCA	1e0	-4.842e-02	1.0000	415.0	5.49%	2449.4	5.94%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-4.814e-02	1.0000	46.0	0.61%	316.5	0.77%
ANAC004(NAC)/colamp-ANAC004-DAP-Seq(GSE60143)/Homer	WNCTTVYNNNRBAAG	1e0	-4.791e-02	1.0000	99.0	1.31%	634.3	1.54%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-4.756e-02	1.0000	892.0	11.81%	5129.5	12.43%
GATA19(C2C2gata)/colamp-GATA19-DAP-Seq(GSE60143)/Homer	ATCSGATCVG	1e0	-4.410e-02	1.0000	16.0	0.21%	128.5	0.31%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-4.331e-02	1.0000	617.0	8.17%	3595.4	8.72%
WIP5(C2H2)/colamp-WIP5-DAP-Seq(GSE60143)/Homer	TDTTCTCMAGGT	1e0	-4.275e-02	1.0000	467.0	6.18%	2750.2	6.67%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-4.226e-02	1.0000	91.0	1.20%	590.4	1.43%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-4.210e-02	1.0000	843.0	11.16%	4864.2	11.79%
GATA6(C2C2gata)/col200-GATA6-DAP-Seq(GSE60143)/Homer	TAGATCTARAHH	1e0	-4.207e-02	1.0000	27.0	0.36%	200.2	0.49%
WRKY11(WRKY)/col-WRKY11-DAP-Seq(GSE60143)/Homer	SCGTTGACTTTN	1e0	-4.186e-02	1.0000	20.0	0.26%	155.4	0.38%
AT1G49560(G2like)/colamp-AT1G49560-DAP-Seq(GSE60143)/Homer	GAWTCTNWDA	1e0	-4.093e-02	1.0000	348.0	4.61%	2077.0	5.03%
AT3G10113(MYBrelated)/col-AT3G10113-DAP-Seq(GSE60143)/Homer	WNAAATATCWWN	1e0	-3.917e-02	1.0000	117.0	1.55%	746.7	1.81%
AT4G37180(G2like)/col-AT4G37180-DAP-Seq(GSE60143)/Homer	AGAATCTTNN	1e0	-3.900e-02	1.0000	322.0	4.26%	1931.7	4.68%
ATHB53(HB)/col-ATHB53-DAP-Seq(GSE60143)/Homer	CAATAATT	1e0	-3.881e-02	1.0000	128.0	1.69%	811.6	1.97%
WRKY18(WRKY)/col-WRKY18-DAP-Seq(GSE60143)/Homer	NNNTTGACYWNNNNN	1e0	-3.827e-02	1.0000	352.0	4.66%	2103.9	5.10%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-3.786e-02	1.0000	88.0	1.16%	575.2	1.39%
WRKY28(WRKY)/col-WRKY28-DAP-Seq(GSE60143)/Homer	BGTTGACTWH	1e0	-3.629e-02	1.0000	287.0	3.80%	1734.9	4.21%
bHLH18(bHLH)/col-bHLH18-DAP-Seq(GSE60143)/Homer	CACGTGTTYCACGTG	1e0	-3.599e-02	1.0000	7.0	0.09%	68.1	0.16%
MYB39(MYB)/col-MYB39-DAP-Seq(GSE60143)/Homer	WWAARKTAGGTGRAA	1e0	-3.564e-02	1.0000	28.0	0.37%	209.1	0.51%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-3.368e-02	1.0000	60.0	0.79%	409.0	0.99%
GATA12(C2C2gata)/col-GATA12-DAP-Seq(GSE60143)/Homer	YAGATCTRAW	1e0	-3.311e-02	1.0000	175.0	2.32%	1091.2	2.65%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-3.268e-02	1.0000	21.0	0.28%	165.3	0.40%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-3.268e-02	1.0000	21.0	0.28%	165.3	0.40%
At1g69690(TCP)/colamp-At1g69690-DAP-Seq(GSE60143)/Homer	NHGTGGGGCCCACHW	1e0	-3.236e-02	1.0000	88.0	1.16%	579.0	1.40%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-3.216e-02	1.0000	872.0	11.54%	5045.9	12.23%
AT1G72740(MYBrelated)/colamp-AT1G72740-DAP-Seq(GSE60143)/Homer	NNWWAMCCTAAHWNN	1e0	-3.177e-02	1.0000	278.0	3.68%	1688.3	4.09%
WRKY42(WRKY)/colamp-WRKY42-DAP-Seq(GSE60143)/Homer	NAAAGTCAACGN	1e0	-3.168e-02	1.0000	68.0	0.90%	459.7	1.11%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-3.051e-02	1.0000	32.0	0.42%	237.0	0.57%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-3.010e-02	1.0000	111.0	1.47%	718.6	1.74%
GRF9(GRF)/colamp-GRF9-DAP-Seq(GSE60143)/Homer	NWCTGACANNNNNNN	1e0	-2.963e-02	1.0000	409.0	5.41%	2440.1	5.92%
GATA14(C2C2gata)/col-GATA14-DAP-Seq(GSE60143)/Homer	AYCAGATCTG	1e0	-2.877e-02	1.0000	217.0	2.87%	1340.0	3.25%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-2.840e-02	1.0000	681.0	9.01%	3981.1	9.65%
ANAC096(NAC)/colamp-ANAC096-DAP-Seq(GSE60143)/Homer	TACTTGWNNNWCAAG	1e0	-2.834e-02	1.0000	194.0	2.57%	1208.0	2.93%
RVE1(MYBrelated)/col-RVE1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-2.827e-02	1.0000	150.0	1.99%	950.5	2.30%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e0	-2.741e-02	1.0000	101.0	1.34%	661.8	1.60%
WUS1(Homeobox)/colamp-WUS1-DAP-Seq(GSE60143)/Homer	CAWTCATTCA	1e0	-2.738e-02	1.0000	102.0	1.35%	667.5	1.62%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-2.697e-02	1.0000	959.0	12.69%	5544.1	13.44%
FRS9(ND)/col-FRS9-DAP-Seq(GSE60143)/Homer	RGAGAGAGAAAG	1e0	-2.641e-02	1.0000	85.0	1.12%	566.2	1.37%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-2.538e-02	1.0000	877.0	11.61%	5089.3	12.34%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-2.528e-02	1.0000	16.0	0.21%	135.8	0.33%
ANAC028(NAC)/col-ANAC028-DAP-Seq(GSE60143)/Homer	WRCTTGNNNNNCAAG	1e0	-2.525e-02	1.0000	221.0	2.92%	1368.9	3.32%
BOS1(MYB)/col-BOS1-DAP-Seq(GSE60143)/Homer	NNRCCTAACT	1e0	-2.518e-02	1.0000	364.0	4.82%	2191.1	5.31%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-2.484e-02	1.0000	141.0	1.87%	901.6	2.19%
MYB92(MYB)/colamp-MYB92-DAP-Seq(GSE60143)/Homer	GGTAGGTR	1e0	-2.380e-02	1.0000	411.0	5.44%	2462.5	5.97%
MYB94(MYB)/col-MYB94-DAP-Seq(GSE60143)/Homer	WGGTRGTTGGKA	1e0	-2.371e-02	1.0000	121.0	1.60%	784.5	1.90%
ANAC062(NAC)/colamp-ANAC062-DAP-Seq(GSE60143)/Homer	TACTTANTNWNYAAG	1e0	-2.351e-02	1.0000	100.0	1.32%	659.1	1.60%
GATA1(C2C2gata)/colamp-GATA1-DAP-Seq(GSE60143)/Homer	DDWWYYAGATCTRRW	1e0	-2.341e-02	1.0000	88.0	1.16%	587.6	1.42%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-2.282e-02	1.0000	301.0	3.98%	1835.0	4.45%
DAG2(C2C2dof)/col-DAG2-DAP-Seq(GSE60143)/Homer	WWTTHACTTTTT	1e0	-2.257e-02	1.0000	584.0	7.73%	3448.0	8.36%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-2.246e-02	1.0000	57.0	0.75%	399.8	0.97%
MYB57(MYB)/col-MYB57-DAP-Seq(GSE60143)/Homer	TTACCTAACT	1e0	-2.239e-02	1.0000	112.0	1.48%	732.9	1.78%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-2.175e-02	1.0000	25.0	0.33%	197.4	0.48%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-2.116e-02	1.0000	28.0	0.37%	217.8	0.53%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-2.105e-02	1.0000	21.0	0.28%	172.0	0.42%
WRKY40(WRKY)/colamp-WRKY40-DAP-Seq(GSE60143)/Homer	AHWAGTCAAC	1e0	-2.088e-02	1.0000	104.0	1.38%	686.8	1.66%
ANAC005(NAC)/col-ANAC005-DAP-Seq(GSE60143)/Homer	WVCTTVTWNHABAAG	1e0	-2.045e-02	1.0000	138.0	1.83%	889.2	2.16%
WRKY22(WRKY)/colamp-WRKY22-DAP-Seq(GSE60143)/Homer	WWAAAGTCAACK	1e0	-1.964e-02	1.0000	125.0	1.65%	813.8	1.97%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.963e-02	1.0000	161.0	2.13%	1026.4	2.49%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.931e-02	1.0000	102.0	1.35%	676.9	1.64%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-1.925e-02	1.0000	241.0	3.19%	1494.7	3.62%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e0	-1.839e-02	1.0000	93.0	1.23%	623.7	1.51%
WRKY75(WRKY)/col-WRKY75-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e0	-1.721e-02	1.0000	207.0	2.74%	1300.3	3.15%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-1.705e-02	1.0000	55.0	0.73%	392.3	0.95%
WRKY50(WRKY)/col-WRKY50-DAP-Seq(GSE60143)/Homer	NNTTGACTWNNGNNN	1e0	-1.555e-02	1.0000	196.0	2.59%	1239.0	3.00%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-1.537e-02	1.0000	78.0	1.03%	536.7	1.30%
At2g45680(TCP)/colamp-At2g45680-DAP-Seq(GSE60143)/Homer	GTGGGNCCCACNDND	1e0	-1.523e-02	1.0000	17.0	0.22%	148.3	0.36%
WRKY25(WRKY)/colamp-WRKY25-DAP-Seq(GSE60143)/Homer	NNNNHRGTCAAMNNN	1e0	-1.474e-02	1.0000	239.0	3.16%	1492.5	3.62%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e0	-1.473e-02	1.0000	623.0	8.25%	3691.7	8.95%
AT2G40260(G2like)/colamp-AT2G40260-DAP-Seq(GSE60143)/Homer	WAAAYATTCTTT	1e0	-1.449e-02	1.0000	443.0	5.86%	2668.4	6.47%
bZIP3(bZIP)/col-bZIP3-DAP-Seq(GSE60143)/Homer	DWKNHSACGTGGCAD	1e0	-1.333e-02	1.0000	224.0	2.96%	1408.5	3.41%
BAM8(BES1)/col-BAM8-DAP-Seq(GSE60143)/Homer	NNWSACACGTGTSWN	1e0	-1.326e-02	1.0000	70.0	0.93%	490.1	1.19%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-1.316e-02	1.0000	83.0	1.10%	570.4	1.38%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-1.289e-02	1.0000	987.0	13.06%	5750.3	13.94%
At5g22890(C2H2)/col-At5g22890-DAP-Seq(GSE60143)/Homer	NSAGGTKWTATCTGD	1e0	-1.283e-02	1.0000	4.0	0.05%	53.3	0.13%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.271e-02	1.0000	1103.0	14.60%	6401.4	15.52%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e0	-1.206e-02	1.0000	569.0	7.53%	3395.2	8.23%
AT5G25475(ABI3VP1)/col-AT5G25475-DAP-Seq(GSE60143)/Homer	RNNRNCAAGCADNDB	1e0	-1.177e-02	1.0000	598.0	7.91%	3561.3	8.63%
GATA4(C2C2gata)/col-GATA4-DAP-Seq(GSE60143)/Homer	DDWTYAGATCTR	1e0	-1.143e-02	1.0000	232.0	3.07%	1460.2	3.54%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.121e-02	1.0000	128.0	1.69%	847.0	2.05%
WRKY43(WRKY)/colamp-WRKY43-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTT	1e0	-1.120e-02	1.0000	59.0	0.78%	425.6	1.03%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-1.087e-02	1.0000	17.0	0.22%	152.1	0.37%
AT3G42860(zfGRF)/col-AT3G42860-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e0	-1.059e-02	1.0000	49.0	0.65%	363.0	0.88%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.043e-02	1.0000	158.0	2.09%	1027.3	2.49%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.005e-02	1.0000	159.0	2.10%	1034.4	2.51%
WRKY3(WRKY)/col-WRKY3-DAP-Seq(GSE60143)/Homer	NCKTTGACYDDN	1e0	-9.976e-03	1.0000	123.0	1.63%	819.9	1.99%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-9.337e-03	1.0000	188.0	2.49%	1208.6	2.93%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-9.059e-03	1.0000	742.0	9.82%	4391.9	10.65%
At5g52660(MYBrelated)/colamp-At5g52660-DAP-Seq(GSE60143)/Homer	HAAAAATATCTW	1e0	-8.808e-03	1.0000	102.0	1.35%	696.0	1.69%
WRKY65(WRKY)/colamp-WRKY65-DAP-Seq(GSE60143)/Homer	AWWWAGTCAACG	1e0	-8.482e-03	1.0000	86.0	1.14%	598.5	1.45%
At4g01280(MYBrelated)/colamp-At4g01280-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-8.253e-03	1.0000	141.0	1.87%	932.8	2.26%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-7.837e-03	1.0000	353.0	4.67%	2177.9	5.28%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-7.528e-03	1.0000	106.0	1.40%	723.3	1.75%
WRKY20(WRKY)/col-WRKY20-DAP-Seq(GSE60143)/Homer	CKTTGACYWD	1e0	-7.337e-03	1.0000	152.0	2.01%	1001.7	2.43%
PIF7(bHLH)/col-PIF7-DAP-Seq(GSE60143)/Homer	CCACGTGGNH	1e0	-7.263e-03	1.0000	162.0	2.14%	1061.1	2.57%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-6.662e-03	1.0000	2303.0	30.48%	13116.2	31.79%
bZIP48(bZIP)/colamp-bZIP48-DAP-Seq(GSE60143)/Homer	DDWWKVTSACGTGGC	1e0	-6.326e-03	1.0000	146.0	1.93%	969.3	2.35%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-6.145e-03	1.0000	355.0	4.70%	2198.2	5.33%
GBF5(bZIP)/colamp-GBF5-DAP-Seq(GSE60143)/Homer	WKNWSACGTGGCAWN	1e0	-6.049e-03	1.0000	136.0	1.80%	910.5	2.21%
BIM2(bHLH)/col-BIM2-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNN	1e0	-6.017e-03	1.0000	458.0	6.06%	2793.5	6.77%
At4g38000(C2C2dof)/col-At4g38000-DAP-Seq(GSE60143)/Homer	WWWTWACTTTTT	1e0	-5.494e-03	1.0000	336.0	4.45%	2092.2	5.07%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-5.457e-03	1.0000	772.0	10.22%	4588.9	11.12%
At4g36780(BZR)/col-At4g36780-DAP-Seq(GSE60143)/Homer	NNNNNNCACGTGNNN	1e0	-5.296e-03	1.0000	200.0	2.65%	1296.7	3.14%
At3g24120(G2like)/col-At3g24120-DAP-Seq(GSE60143)/Homer	NWWAGMATMW	1e0	-5.071e-03	1.0000	1304.0	17.26%	7586.7	18.39%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-4.939e-03	1.0000	134.0	1.77%	903.6	2.19%
FUS3(ABI3VP1)/col-FUS3-DAP-Seq(GSE60143)/Homer	DNNWTNTGCATGKNN	1e0	-4.917e-03	1.0000	488.0	6.46%	2974.1	7.21%
OBP4(C2C2dof)/col-OBP4-DAP-Seq(GSE60143)/Homer	WTTHACTTTTTB	1e0	-4.695e-03	1.0000	468.0	6.19%	2861.0	6.94%
BPC1(BBRBPC)/colamp-BPC1-DAP-Seq(GSE60143)/Homer	GARGAGAGAGAA	1e0	-4.473e-03	1.0000	175.0	2.32%	1152.3	2.79%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-4.417e-03	1.0000	910.0	12.04%	5380.2	13.04%
WRKY45(WRKY)/col-WRKY45-DAP-Seq(GSE60143)/Homer	HNNNKTTGACTWWNH	1e0	-4.415e-03	1.0000	68.0	0.90%	499.1	1.21%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-4.320e-03	1.0000	618.0	8.18%	3724.7	9.03%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-4.237e-03	1.0000	390.0	5.16%	2415.3	5.85%
dHNF4(NR)/Fly-HNF4-ChIP-Seq(GSE73675)/Homer	GGTCCAAAGTCCAMT	1e0	-4.237e-03	1.0000	5.0	0.07%	70.6	0.17%
TCP7(TCP)/col-TCP7-DAP-Seq(GSE60143)/Homer	GTGGGSCCCACHHNN	1e0	-4.230e-03	1.0000	316.0	4.18%	1985.3	4.81%
WRKY26(WRKY)/colamp-WRKY26-DAP-Seq(GSE60143)/Homer	CGTTGACTWDKN	1e0	-4.161e-03	1.0000	103.0	1.36%	718.6	1.74%
RAV1(RAV)/colamp-RAV1-DAP-Seq(GSE60143)/Homer	TWWTTTCTGTTG	1e0	-4.084e-03	1.0000	223.0	2.95%	1440.2	3.49%
At2g01060(G2like)/colamp-At2g01060-DAP-Seq(GSE60143)/Homer	AGATKCBNWW	1e0	-3.920e-03	1.0000	1133.0	14.99%	6643.9	16.11%
EIN3(EIL)/col-EIN3-DAP-Seq(GSE60143)/Homer	ARATTCAATGWATYT	1e0	-3.609e-03	1.0000	23.0	0.30%	207.4	0.50%
MYB116(MYB)/colamp-MYB116-DAP-Seq(GSE60143)/Homer	AGTTAGGCAN	1e0	-3.358e-03	1.0000	221.0	2.92%	1434.9	3.48%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e0	-3.347e-03	1.0000	119.0	1.57%	821.9	1.99%
GATA11(C2C2gata)/col-GATA11-DAP-Seq(GSE60143)/Homer	DDHYYAGATCTR	1e0	-3.318e-03	1.0000	110.0	1.46%	766.7	1.86%
bZIP52(bZIP)/colamp-bZIP52-DAP-Seq(GSE60143)/Homer	NDNHCAGCTGTCANN	1e0	-3.304e-03	1.0000	681.0	9.01%	4096.5	9.93%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-3.176e-03	1.0000	51.0	0.67%	396.7	0.96%
TCP20(TCP)/col-TCP20-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e0	-3.081e-03	1.0000	262.0	3.47%	1679.3	4.07%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-2.980e-03	1.0000	1212.0	16.04%	7103.1	17.22%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-2.912e-03	1.0000	724.0	9.58%	4347.5	10.54%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-2.626e-03	1.0000	807.0	10.68%	4824.1	11.69%
At1g78700(BZR)/col-At1g78700-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNNNNN	1e0	-2.585e-03	1.0000	214.0	2.83%	1400.7	3.40%
ABI5(bZIP)/col-ABI5-DAP-Seq(GSE60143)/Homer	GCCACGTG	1e0	-2.570e-03	1.0000	317.0	4.20%	2008.1	4.87%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-2.271e-03	1.0000	83.0	1.10%	606.4	1.47%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-1.819e-03	1.0000	159.0	2.10%	1079.4	2.62%
BZR1(BZR)/col-BZR1-DAP-Seq(GSE60143)/Homer	NNCRCACGTGCG	1e0	-1.761e-03	1.0000	72.0	0.95%	541.2	1.31%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-1.644e-03	1.0000	1234.0	16.33%	7261.8	17.60%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e0	-1.437e-03	1.0000	464.0	6.14%	2885.5	6.99%
At1g68670(G2like)/colamp-At1g68670-DAP-Seq(GSE60143)/Homer	WNWWHNRAAGATTCT	1e0	-1.402e-03	1.0000	104.0	1.38%	748.0	1.81%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-1.393e-03	1.0000	225.0	2.98%	1483.8	3.60%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-1.255e-03	1.0000	202.0	2.67%	1348.8	3.27%
WRKY21(WRKY)/colamp-WRKY21-DAP-Seq(GSE60143)/Homer	DCGTTGACTTTT	1e0	-1.250e-03	1.0000	14.0	0.19%	154.0	0.37%
WRKY8(WRKY)/colamp-WRKY8-DAP-Seq(GSE60143)/Homer	CGTTGACTTT	1e0	-1.206e-03	1.0000	17.0	0.22%	176.6	0.43%
At1g72010(TCP)/colamp-At1g72010-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e0	-1.197e-03	1.0000	297.0	3.93%	1915.3	4.64%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e0	-1.127e-03	1.0000	179.0	2.37%	1212.6	2.94%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-1.058e-03	1.0000	365.0	4.83%	2319.1	5.62%
WRKY24(WRKY)/colamp-WRKY24-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e0	-1.042e-03	1.0000	166.0	2.20%	1135.9	2.75%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-1.035e-03	1.0000	261.0	3.45%	1706.4	4.14%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-9.580e-04	1.0000	200.0	2.65%	1343.4	3.26%
TF3A(C2H2)/col-TF3A-DAP-Seq(GSE60143)/Homer	NNDDGAGGAGGWNNN	1e0	-8.450e-04	1.0000	730.0	9.66%	4438.6	10.76%
MS188(MYB)/colamp-MS188-DAP-Seq(GSE60143)/Homer	WARKTAGGTRRA	1e0	-7.920e-04	1.0000	184.0	2.44%	1251.7	3.03%
WRKY31(WRKY)/colamp-WRKY31-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWK	1e0	-7.910e-04	1.0000	128.0	1.69%	908.8	2.20%
WRKY29(WRKY)/colamp-WRKY29-DAP-Seq(GSE60143)/Homer	MGTTGACTTT	1e0	-7.910e-04	1.0000	203.0	2.69%	1366.5	3.31%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-7.320e-04	1.0000	74.0	0.98%	569.1	1.38%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-6.930e-04	1.0000	89.0	1.18%	666.6	1.62%
WRKY55(WRKY)/col-WRKY55-DAP-Seq(GSE60143)/Homer	NCGTTGACTT	1e0	-5.710e-04	1.0000	226.0	2.99%	1513.1	3.67%
MYB49(MYB)/col-MYB49-DAP-Seq(GSE60143)/Homer	ARKTAGGTRR	1e0	-5.590e-04	1.0000	310.0	4.10%	2015.9	4.89%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e0	-5.570e-04	1.0000	131.0	1.73%	934.7	2.27%
WRKY6(WRKY)/colamp-WRKY6-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWD	1e0	-5.350e-04	1.0000	161.0	2.13%	1120.6	2.72%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-5.300e-04	1.0000	82.0	1.09%	626.6	1.52%
CCA(Myb)/Arabidopsis-CCA.GFP-ChIP-Seq(GSE70533)/Homer	AGATATYTTT	1e0	-5.000e-04	1.0000	212.0	2.81%	1432.0	3.47%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-3.870e-04	1.0000	323.0	4.27%	2103.1	5.10%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-3.390e-04	1.0000	112.0	1.48%	825.2	2.00%
MYB10(MYB)/col-MYB10-DAP-Seq(GSE60143)/Homer	YCCACCTACCHH	1e0	-3.370e-04	1.0000	92.0	1.22%	698.2	1.69%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-3.320e-04	1.0000	2.0	0.03%	57.2	0.14%
LCL1(MYBrelated)/colamp-LCL1-DAP-Seq(GSE60143)/Homer	NAAAATATCTWHWWN	1e0	-2.450e-04	1.0000	25.0	0.33%	252.3	0.61%
MYB63(MYB)/col-MYB63-DAP-Seq(GSE60143)/Homer	BHYACCWACCHH	1e0	-2.350e-04	1.0000	129.0	1.71%	939.1	2.28%
WRKY14(WRKY)/colamp-WRKY14-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTN	1e0	-2.310e-04	1.0000	80.0	1.06%	628.0	1.52%
At5g08330(TCP)/col-At5g08330-DAP-Seq(GSE60143)/Homer	GGRCCCAC	1e0	-2.020e-04	1.0000	340.0	4.50%	2223.4	5.39%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-1.620e-04	1.0000	363.0	4.80%	2367.0	5.74%
At4g18890(BZR)/col-At4g18890-DAP-Seq(GSE60143)/Homer	NDBRCACGTGYR	1e0	-1.570e-04	1.0000	126.0	1.67%	928.1	2.25%
MYB74(MYB)/colamp-MYB74-DAP-Seq(GSE60143)/Homer	YYYACCTACCWH	1e0	-1.550e-04	1.0000	147.0	1.95%	1060.6	2.57%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-1.460e-04	1.0000	1129.0	14.94%	6791.2	16.46%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-1.400e-04	1.0000	195.0	2.58%	1359.2	3.29%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-1.200e-04	1.0000	139.0	1.84%	1015.3	2.46%
At3g09600(MYBrelated)/colamp-At3g09600-DAP-Seq(GSE60143)/Homer	AAAATATCTT	1e0	-1.180e-04	1.0000	94.0	1.24%	729.3	1.77%
WRKY71(WRKY)/col-WRKY71-DAP-Seq(GSE60143)/Homer	CKTTGACYWW	1e0	-1.050e-04	1.0000	130.0	1.72%	961.8	2.33%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-1.010e-04	1.0000	131.0	1.73%	968.9	2.35%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-9.600e-05	1.0000	131.0	1.73%	969.7	2.35%
WRKY27(WRKY)/colamp-WRKY27-DAP-Seq(GSE60143)/Homer	NHGTTGACYTWD	1e0	-7.800e-05	1.0000	173.0	2.29%	1236.8	3.00%
MYB13(MYB)/col-MYB13-DAP-Seq(GSE60143)/Homer	HYCACCWACCHH	1e0	-5.600e-05	1.0000	169.0	2.24%	1218.3	2.95%
MYB4(MYB)/col200-MYB4-DAP-Seq(GSE60143)/Homer	WAGKTAGGTARR	1e0	-4.800e-05	1.0000	147.0	1.95%	1083.7	2.63%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-4.000e-05	1.0000	163.0	2.16%	1187.1	2.88%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-3.800e-05	1.0000	159.0	2.10%	1163.3	2.82%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e0	-3.200e-05	1.0000	252.0	3.34%	1742.8	4.22%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-3.100e-05	1.0000	156.0	2.06%	1148.5	2.78%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.500e-05	1.0000	28.0	0.37%	304.3	0.74%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-1.300e-05	1.0000	349.0	4.62%	2351.7	5.70%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e0	-1.000e-06	1.0000	312.0	4.13%	2180.1	5.28%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-1.000e-06	1.0000	295.0	3.90%	2079.5	5.04%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-1.000e-06	1.0000	586.0	7.76%	3851.0	9.34%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-0.000e+00	1.0000	411.0	5.44%	2821.1	6.84%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-0.000e+00	1.0000	95.0	1.26%	842.6	2.04%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e0	-0.000e+00	1.0000	192.0	2.54%	1631.9	3.96%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.7	0.00%
At1g13300(G2like)/col-At1g13300-DAP-Seq(GSE60143)/Homer	GAATCTWAGATTCYN	1e0	0.000e+00	1.0000	0.0	0.00%	16.3	0.04%
AT4G12670(MYBrelated)/col-AT4G12670-DAP-Seq(GSE60143)/Homer	AGGGTTTAGGGTTTA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
REM16(ABI3VP1)/col-REM16-DAP-Seq(GSE60143)/Homer	DTTTTTSCCGSMAAA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
VRN1(ABI3VP1)/col-VRN1-DAP-Seq(GSE60143)/Homer	TTTTTTTTTT	1e0	0.000e+00	1.0000	0.0	0.00%	1.4	0.00%
WRKY17(WRKY)/colamp-WRKY17-DAP-Seq(GSE60143)/Homer	GCGTTGACTTTT	1e0	0.000e+00	1.0000	0.0	0.00%	21.1	0.05%
WRKY7(WRKY)/colamp-WRKY7-DAP-Seq(GSE60143)/Homer	AAAAGTCAACGSHWD	1e0	0.000e+00	1.0000	0.0	0.00%	5.3	0.01%