Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 12149)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 36700)	% of Background Sequences with Motif
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-5856	-1.349e+04	0.0000	5240.0	43.13%	587.2	1.60%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-4498	-1.036e+04	0.0000	5375.0	44.25%	1182.9	3.22%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-117	-2.700e+02	0.0000	4211.0	34.66%	9275.1	25.25%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-102	-2.351e+02	0.0000	1569.0	12.92%	2692.0	7.33%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-78	-1.809e+02	0.0000	1868.0	15.38%	3640.2	9.91%
SeqBias: CG bias	SSSSSSSSSS	1e-62	-1.431e+02	0.0000	10084.0	83.01%	28227.0	76.84%
E2FA(E2FDP)/colamp-E2FA-DAP-Seq(GSE60143)/Homer	WWTGGCGCCAWWWNN	1e-57	-1.315e+02	0.0000	717.0	5.90%	1133.2	3.08%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-51	-1.193e+02	0.0000	336.0	2.77%	391.5	1.07%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-46	-1.062e+02	0.0000	1751.0	14.41%	3767.6	10.26%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-44	-1.030e+02	0.0000	2314.0	19.05%	5280.7	14.38%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-42	-9.821e+01	0.0000	894.0	7.36%	1666.4	4.54%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-42	-9.798e+01	0.0000	4018.0	33.08%	10066.0	27.40%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-42	-9.702e+01	0.0000	1201.0	9.89%	2422.2	6.59%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-41	-9.469e+01	0.0000	791.0	6.51%	1438.4	3.92%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-39	-9.152e+01	0.0000	912.0	7.51%	1741.0	4.74%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-36	-8.504e+01	0.0000	1701.0	14.00%	3786.8	10.31%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-35	-8.171e+01	0.0000	2703.0	22.25%	6530.7	17.78%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-32	-7.476e+01	0.0000	499.0	4.11%	846.5	2.30%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-32	-7.461e+01	0.0000	812.0	6.68%	1584.4	4.31%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-31	-7.317e+01	0.0000	1467.0	12.08%	3260.7	8.88%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-30	-7.045e+01	0.0000	147.0	1.21%	143.9	0.39%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-27	-6.262e+01	0.0000	2520.0	20.74%	6220.3	16.93%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-27	-6.237e+01	0.0000	81.0	0.67%	54.3	0.15%
SeqBias: polyC-repeat	CCCCCCCCCC	1e-26	-6.083e+01	0.0000	12100.0	99.60%	36236.3	98.64%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-25	-5.851e+01	0.0000	1741.0	14.33%	4117.5	11.21%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-25	-5.780e+01	0.0000	117.0	0.96%	112.8	0.31%
SeqBias: A/T bias	WWWWWWWWWW	1e-24	-5.647e+01	0.0000	7426.0	61.13%	20758.1	56.51%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-24	-5.595e+01	0.0000	473.0	3.89%	863.8	2.35%
DREB19(AP2EREBP)/colamp-DREB19-DAP-Seq(GSE60143)/Homer	AATGTCGGTK	1e-24	-5.590e+01	0.0000	940.0	7.74%	2017.3	5.49%
SeqBias: polyA-repeat	AAAAAAAAAA	1e-23	-5.499e+01	0.0000	10533.0	86.71%	30623.1	83.36%
At1g75490(AP2EREBP)/colamp-At1g75490-DAP-Seq(GSE60143)/Homer	CACCGMCT	1e-23	-5.486e+01	0.0000	3626.0	29.85%	9459.1	25.75%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-23	-5.484e+01	0.0000	873.0	7.19%	1853.5	5.05%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-23	-5.375e+01	0.0000	1088.0	8.96%	2416.3	6.58%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-23	-5.323e+01	0.0000	656.0	5.40%	1318.8	3.59%
AT2G15740(C2H2)/col-AT2G15740-DAP-Seq(GSE60143)/Homer	DHNDWATCGATD	1e-22	-5.158e+01	0.0000	768.0	6.32%	1608.8	4.38%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-22	-5.091e+01	0.0000	2006.0	16.51%	4922.2	13.40%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-21	-4.987e+01	0.0000	6948.0	57.19%	19405.9	52.83%
NAP(NAC)/col-NAP-DAP-Seq(GSE60143)/Homer	ARGTTACGTRTN	1e-21	-4.915e+01	0.0000	1023.0	8.42%	2282.1	6.21%
RRTF1(AP2EREBP)/colamp-RRTF1-DAP-Seq(GSE60143)/Homer	CCGCCGCHATTT	1e-19	-4.591e+01	0.0000	654.0	5.38%	1357.5	3.70%
DEL2(E2FDP)/col-DEL2-DAP-Seq(GSE60143)/Homer	WTTTCSCGCC	1e-19	-4.533e+01	0.0000	672.0	5.53%	1406.6	3.83%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-18	-4.364e+01	0.0000	1242.0	10.22%	2911.6	7.93%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-18	-4.321e+01	0.0000	142.0	1.17%	182.6	0.50%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-18	-4.282e+01	0.0000	461.0	3.79%	898.9	2.45%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-17	-4.138e+01	0.0000	1102.0	9.07%	2557.8	6.96%
DREB2(AP2EREBP)/col-DREB2-DAP-Seq(GSE60143)/Homer	TMACCGACATWA	1e-17	-4.019e+01	0.0000	640.0	5.27%	1359.3	3.70%
NAM(NAC)/col-NAM-DAP-Seq(GSE60143)/Homer	RGTTRCGTRW	1e-17	-4.017e+01	0.0000	1490.0	12.27%	3620.1	9.85%
DEAR2(AP2EREBP)/colamp-DEAR2-DAP-Seq(GSE60143)/Homer	HCACCGACAWHD	1e-17	-3.937e+01	0.0000	1623.0	13.36%	3995.6	10.88%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e-16	-3.854e+01	0.0000	2081.0	17.13%	5282.2	14.38%
AT1G71450(AP2EREBP)/col-AT1G71450-DAP-Seq(GSE60143)/Homer	DHDWTGTCGGTG	1e-16	-3.714e+01	0.0000	3146.0	25.90%	8341.3	22.71%
At5g18450(AP2EREBP)/col-At5g18450-DAP-Seq(GSE60143)/Homer	CACCGCTT	1e-15	-3.534e+01	0.0000	4209.0	34.65%	11473.5	31.23%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-15	-3.523e+01	0.0000	3726.0	30.67%	10059.8	27.38%
AT1G12630(AP2EREBP)/colamp-AT1G12630-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e-15	-3.516e+01	0.0000	790.0	6.50%	1785.1	4.86%
ATAF1(NAC)/col-ATAF1-DAP-Seq(GSE60143)/Homer	YACGTMAY	1e-15	-3.480e+01	0.0000	3530.0	29.06%	9495.7	25.85%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e-14	-3.421e+01	0.0000	8843.0	72.79%	25540.6	69.53%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-14	-3.417e+01	0.0000	1504.0	12.38%	3728.9	10.15%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-13	-3.211e+01	0.0000	1917.0	15.78%	4909.4	13.36%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-13	-3.159e+01	0.0000	332.0	2.73%	645.0	1.76%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e-13	-3.158e+01	0.0000	197.0	1.62%	330.9	0.90%
ABR1(AP2EREBP)/colamp-ABR1-DAP-Seq(GSE60143)/Homer	AAATGGCGGCGG	1e-13	-3.092e+01	0.0000	2654.0	21.85%	7027.9	19.13%
AT3G10030(Trihelix)/colamp-AT3G10030-DAP-Seq(GSE60143)/Homer	GCCGTTAA	1e-13	-3.092e+01	0.0000	886.0	7.29%	2078.8	5.66%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-13	-3.080e+01	0.0000	1648.0	13.57%	4172.5	11.36%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-13	-3.043e+01	0.0000	2538.0	20.89%	6702.7	18.25%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-13	-3.032e+01	0.0000	990.0	8.15%	2364.2	6.44%
Tal1	CATCTG	1e-13	-3.004e+01	0.0000	1630.0	13.42%	4132.5	11.25%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-12	-2.974e+01	0.0000	2064.0	16.99%	5360.8	14.59%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e-12	-2.957e+01	0.0000	257.0	2.12%	476.1	1.30%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-12	-2.933e+01	0.0000	1690.0	13.91%	4310.7	11.73%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-12	-2.872e+01	0.0000	398.0	3.28%	824.5	2.24%
ERF7(AP2EREBP)/col-ERF7-DAP-Seq(GSE60143)/Homer	ATGRCGGCGG	1e-12	-2.868e+01	0.0000	3424.0	28.19%	9300.1	25.32%
At5g65130(AP2EREBP)/colamp-At5g65130-DAP-Seq(GSE60143)/Homer	CCRCCGACAWTN	1e-12	-2.825e+01	0.0000	652.0	5.37%	1481.6	4.03%
TGA3(bZIP)/colamp-TGA3-DAP-Seq(GSE60143)/Homer	WTGATGACGTCATCW	1e-12	-2.763e+01	0.0000	103.0	0.85%	142.3	0.39%
bZIP18(bZIP)/colamp-bZIP18-DAP-Seq(GSE60143)/Homer	KGMCAGCTND	1e-11	-2.635e+01	0.0000	6364.0	52.39%	18101.4	49.28%
MYB3R1(MYB)/col-MYB3R1-DAP-Seq(GSE60143)/Homer	WWDTDACCGTTR	1e-11	-2.634e+01	0.0000	362.0	2.98%	749.3	2.04%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-11	-2.584e+01	0.0000	1428.0	11.76%	3625.2	9.87%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-11	-2.569e+01	0.0000	704.0	5.80%	1642.9	4.47%
TGA5(bZIP)/col-TGA5-DAP-Seq(GSE60143)/Homer	NNGATGACGTCATCN	1e-11	-2.559e+01	0.0000	131.0	1.08%	206.1	0.56%
At2g33710(AP2EREBP)/colamp-At2g33710-DAP-Seq(GSE60143)/Homer	WTKGCGGCKR	1e-10	-2.492e+01	0.0000	4359.0	35.88%	12131.1	33.02%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-10	-2.482e+01	0.0000	312.0	2.57%	634.6	1.73%
At3g60580(C2H2)/col-At3g60580-DAP-Seq(GSE60143)/Homer	WTTYTACT	1e-10	-2.396e+01	0.0000	5014.0	41.27%	14102.1	38.39%
ERF11(AP2EREBP)/col-ERF11-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e-10	-2.393e+01	0.0000	2886.0	23.76%	7827.8	21.31%
ERF4(AP2EREBP)/colamp-ERF4-DAP-Seq(GSE60143)/Homer	WDWTGGCGGCGG	1e-10	-2.350e+01	0.0000	3008.0	24.76%	8191.4	22.30%
MYB101(MYB)/colamp-MYB101-DAP-Seq(GSE60143)/Homer	TAACNRMY	1e-10	-2.338e+01	0.0000	2538.0	20.89%	6829.4	18.59%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-10	-2.337e+01	0.0000	117.0	0.96%	183.8	0.50%
TGA9(bZIP)/colamp-TGA9-DAP-Seq(GSE60143)/Homer	VTGACGTC	1e-10	-2.316e+01	0.0000	1228.0	10.11%	3104.1	8.45%
LBD23(LOBAS2)/colamp-LBD23-DAP-Seq(GSE60143)/Homer	GCGNAWWWTNCGCYW	1e-10	-2.313e+01	0.0000	2054.0	16.91%	5441.0	14.81%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-9	-2.297e+01	0.0000	780.0	6.42%	1874.2	5.10%
RAP212(AP2EREBP)/col-RAP212-DAP-Seq(GSE60143)/Homer	CGCCGCCATTTT	1e-9	-2.292e+01	0.0000	2293.0	18.88%	6131.4	16.69%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-9	-2.248e+01	0.0000	3928.0	32.33%	10913.6	29.71%
ERF9(AP2EREBP)/colamp-ERF9-DAP-Seq(GSE60143)/Homer	AWATGGCGGCGG	1e-9	-2.235e+01	0.0000	1273.0	10.48%	3241.1	8.82%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-9	-2.187e+01	0.0000	123.0	1.01%	201.6	0.55%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-9	-2.140e+01	0.0000	640.0	5.27%	1513.2	4.12%
At5g08750(C3H)/col-At5g08750-DAP-Seq(GSE60143)/Homer	NWDTTGCGGCTR	1e-9	-2.137e+01	0.0000	703.0	5.79%	1683.6	4.58%
TGA10(bZIP)/colamp-TGA10-DAP-Seq(GSE60143)/Homer	ATGACGTC	1e-9	-2.136e+01	0.0000	595.0	4.90%	1393.2	3.79%
ERF8(AP2EREBP)/colamp-ERF8-DAP-Seq(GSE60143)/Homer	CGCCGYCATW	1e-9	-2.131e+01	0.0000	2968.0	24.43%	8121.9	22.11%
RAP211(AP2EREBP)/colamp-RAP211-DAP-Seq(GSE60143)/Homer	RGCCGGCYWW	1e-8	-2.062e+01	0.0000	4322.0	35.58%	12125.5	33.01%
ERF10(AP2EREBP)/col-ERF10-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e-8	-2.019e+01	0.0000	2446.0	20.14%	6627.4	18.04%
ERF115(AP2EREBP)/colamp-ERF115-DAP-Seq(GSE60143)/Homer	WTKRCGGCGB	1e-8	-1.988e+01	0.0000	4197.0	34.55%	11773.9	32.05%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-8	-1.983e+01	0.0000	2097.0	17.26%	5626.6	15.32%
At1g36060(AP2EREBP)/colamp-At1g36060-DAP-Seq(GSE60143)/Homer	NNWWKGTCGGTG	1e-8	-1.966e+01	0.0000	939.0	7.73%	2349.9	6.40%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-8	-1.942e+01	0.0000	1636.0	13.47%	4313.3	11.74%
RAP26(AP2EREBP)/colamp-RAP26-DAP-Seq(GSE60143)/Homer	HDATGGCGGCGG	1e-8	-1.894e+01	0.0000	3382.0	27.84%	9390.0	25.56%
AT4G18450(AP2EREBP)/col-AT4G18450-DAP-Seq(GSE60143)/Homer	ATGGCGGCKG	1e-8	-1.889e+01	0.0000	1853.0	15.25%	4943.6	13.46%
ERF5(AP2EREBP)/colamp-ERF5-DAP-Seq(GSE60143)/Homer	DCMGCCGCCA	1e-8	-1.871e+01	0.0000	2033.0	16.74%	5464.9	14.88%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-8	-1.854e+01	0.0000	2588.0	21.30%	7075.3	19.26%
ANAC047(NAC)/colamp-ANAC047-DAP-Seq(GSE60143)/Homer	WACACGTAACTT	1e-7	-1.831e+01	0.0000	719.0	5.92%	1761.1	4.79%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-7	-1.822e+01	0.0000	429.0	3.53%	982.4	2.67%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-7	-1.820e+01	0.0000	860.0	7.08%	2150.4	5.85%
ERF105(AP2EREBP)/colamp-ERF105-DAP-Seq(GSE60143)/Homer	TGGCGGCT	1e-7	-1.819e+01	0.0000	4053.0	33.36%	11390.4	31.01%
AT1G28160(AP2EREBP)/colamp-AT1G28160-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e-7	-1.776e+01	0.0000	4967.0	40.89%	14124.5	38.45%
LBD18(LOBAS2)/colamp-LBD18-DAP-Seq(GSE60143)/Homer	CKGAWWTTCHGS	1e-7	-1.772e+01	0.0000	2629.0	21.64%	7213.9	19.64%
ERF13(AP2EREBP)/colamp-ERF13-DAP-Seq(GSE60143)/Homer	TYAGCCGCCATT	1e-7	-1.746e+01	0.0000	2983.0	24.56%	8254.4	22.47%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-7	-1.743e+01	0.0000	51.0	0.42%	64.7	0.18%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-7	-1.738e+01	0.0000	379.0	3.12%	858.8	2.34%
bZIP50(bZIP)/colamp-bZIP50-DAP-Seq(GSE60143)/Homer	GATGACGTCA	1e-7	-1.724e+01	0.0000	1002.0	8.25%	2559.0	6.97%
CEJ1(AP2EREBP)/col-CEJ1-DAP-Seq(GSE60143)/Homer	WWTGTCGGTG	1e-7	-1.670e+01	0.0000	1275.0	10.50%	3335.8	9.08%
CRF4(AP2EREBP)/colamp-CRF4-DAP-Seq(GSE60143)/Homer	CGCCGCCA	1e-7	-1.660e+01	0.0000	2399.0	19.75%	6569.0	17.88%
SPL5(SBP)/colamp-SPL5-DAP-Seq(GSE60143)/Homer	NNHGTACGGHNN	1e-7	-1.651e+01	0.0000	696.0	5.73%	1720.3	4.68%
ERF15(AP2EREBP)/colamp-ERF15-DAP-Seq(GSE60143)/Homer	WDHAGCMGCCAT	1e-7	-1.646e+01	0.0000	4957.0	40.81%	14132.7	38.47%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-7	-1.615e+01	0.0000	1230.0	10.13%	3217.1	8.76%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-6	-1.607e+01	0.0000	1311.0	10.79%	3449.0	9.39%
CRF10(AP2EREBP)/col100-CRF10-DAP-Seq(GSE60143)/Homer	DCCGCCGYHA	1e-6	-1.607e+01	0.0000	4293.0	35.34%	12162.6	33.11%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-6	-1.570e+01	0.0000	693.0	5.70%	1722.1	4.69%
MYB77(MYB)/col-MYB77-DAP-Seq(GSE60143)/Homer	NYAACBGYMC	1e-6	-1.565e+01	0.0000	1755.0	14.45%	4726.6	12.87%
ERF3(AP2EREBP)/colamp-ERF3-DAP-Seq(GSE60143)/Homer	ATGGCGGCGG	1e-6	-1.552e+01	0.0000	2415.0	19.88%	6641.7	18.08%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e-6	-1.546e+01	0.0000	1927.0	15.86%	5226.1	14.23%
AZF1(C2H2)/colamp-AZF1-DAP-Seq(GSE60143)/Homer	DKSWCACT	1e-6	-1.528e+01	0.0000	5085.0	41.86%	14551.4	39.61%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-6	-1.496e+01	0.0000	1266.0	10.42%	3340.6	9.09%
At1g19210(AP2EREBP)/colamp-At1g19210-DAP-Seq(GSE60143)/Homer	HCACCGACCAHN	1e-6	-1.475e+01	0.0000	1729.0	14.23%	4670.3	12.71%
ESE3(AP2EREBP)/col-ESE3-DAP-Seq(GSE60143)/Homer	GACGGTGG	1e-6	-1.451e+01	0.0000	4141.0	34.09%	11756.3	32.00%
AT5G05550(Trihelix)/col-AT5G05550-DAP-Seq(GSE60143)/Homer	HDNHDTCKCCGGMGA	1e-6	-1.426e+01	0.0000	2341.0	19.27%	6457.0	17.58%
MYB3R5(MYB)/col-MYB3R5-DAP-Seq(GSE60143)/Homer	THYAACGGTHAWAWT	1e-6	-1.419e+01	0.0000	105.0	0.86%	190.5	0.52%
SHN3(AP2EREBP)/col-SHN3-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e-6	-1.394e+01	0.0000	2038.0	16.78%	5582.6	15.20%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-6	-1.388e+01	0.0000	762.0	6.27%	1938.3	5.28%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-5	-1.358e+01	0.0000	4131.0	34.01%	11755.0	32.00%
MYB3R4(MYB)/col-MYB3R4-DAP-Seq(GSE60143)/Homer	AWWTAACCGTTR	1e-5	-1.323e+01	0.0000	204.0	1.68%	438.9	1.19%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-5	-1.320e+01	0.0000	314.0	2.58%	724.1	1.97%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-5	-1.314e+01	0.0000	2032.0	16.73%	5584.3	15.20%
bHLH28(bHLH)/col-bHLH28-DAP-Seq(GSE60143)/Homer	NHHTGTACGGAH	1e-5	-1.308e+01	0.0000	435.0	3.58%	1049.8	2.86%
SPL15(SBP)/colamp-SPL15-DAP-Seq(GSE60143)/Homer	WDWMMGTACADW	1e-5	-1.301e+01	0.0000	1590.0	13.09%	4307.7	11.73%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-5	-1.286e+01	0.0000	2865.0	23.58%	8029.2	21.86%
AtGRF6(GRF)/col-AtGRF6-DAP-Seq(GSE60143)/Homer	NTGTCAGADNNNNNN	1e-5	-1.273e+01	0.0000	1227.0	10.10%	3271.6	8.91%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-5	-1.225e+01	0.0000	781.0	6.43%	2016.5	5.49%
CELF2(RRM)/JSL1-CELF2-CLIP-Seq(GSE71264)/Homer	RGTGTCAG	1e-5	-1.223e+01	0.0000	396.0	3.26%	953.0	2.59%
HY5(bZIP)/colamp-HY5-DAP-Seq(GSE60143)/Homer	RRTSACGTSD	1e-5	-1.208e+01	0.0000	946.0	7.79%	2484.8	6.76%
MYB56(MYB)/colamp-MYB56-DAP-Seq(GSE60143)/Homer	HTAACGRMHY	1e-5	-1.203e+01	0.0000	887.0	7.30%	2318.3	6.31%
JGL(C2H2)/col-JGL-DAP-Seq(GSE60143)/Homer	ACYTTCAGTT	1e-5	-1.198e+01	0.0000	1648.0	13.57%	4498.5	12.25%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e-5	-1.192e+01	0.0000	15.0	0.12%	11.2	0.03%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-5	-1.191e+01	0.0000	245.0	2.02%	554.9	1.51%
AT5G23930(mTERF)/col-AT5G23930-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e-4	-1.149e+01	0.0001	4697.0	38.66%	13515.8	36.79%
LBD19(LOBAS2)/colamp-LBD19-DAP-Seq(GSE60143)/Homer	CCKGAAWTTCMGGAW	1e-4	-1.091e+01	0.0001	1803.0	14.84%	4974.3	13.54%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-4	-1.078e+01	0.0001	2920.0	24.04%	8254.7	22.47%
TCX2(CPP)/colamp-TCX2-DAP-Seq(GSE60143)/Homer	NNWWTTYRAAHN	1e-4	-1.075e+01	0.0001	1290.0	10.62%	3493.1	9.51%
AT1G76870(Trihelix)/col-AT1G76870-DAP-Seq(GSE60143)/Homer	AAAACCRGWW	1e-4	-1.073e+01	0.0001	379.0	3.12%	925.0	2.52%
ARF16(ARF)/col-ARF16-DAP-Seq(GSE60143)/Homer	ATTTTACGAT	1e-4	-1.071e+01	0.0001	151.0	1.24%	321.6	0.88%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-4	-1.039e+01	0.0002	683.0	5.62%	1771.2	4.82%
CBF3(AP2EREBP)/colamp-CBF3-DAP-Seq(GSE60143)/Homer	YNRCCGACATNN	1e-4	-1.024e+01	0.0002	547.0	4.50%	1393.5	3.79%
LBD2(LOBAS2)/colamp-LBD2-DAP-Seq(GSE60143)/Homer	TCCGAWTTTTTCGGN	1e-4	-1.003e+01	0.0003	323.0	2.66%	780.1	2.12%
SOL1(CPP)/colamp-SOL1-DAP-Seq(GSE60143)/Homer	ATTTAAATHN	1e-4	-1.002e+01	0.0003	1236.0	10.17%	3354.9	9.13%
ERF2(AP2EREBP)/colamp-ERF2-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e-4	-1.000e+01	0.0003	3022.0	24.88%	8581.9	23.36%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-4	-9.900e+00	0.0003	148.0	1.22%	319.5	0.87%
MYB41(MYB)/col-MYB41-DAP-Seq(GSE60143)/Homer	BYTYACCTAA	1e-4	-9.731e+00	0.0003	304.0	2.50%	732.5	1.99%
MYB105(MYB)/colamp-MYB105-DAP-Seq(GSE60143)/Homer	RATWCCGTTA	1e-4	-9.556e+00	0.0004	667.0	5.49%	1740.4	4.74%
STZ(C2H2)/colamp-STZ-DAP-Seq(GSE60143)/Homer	HNBTCACT	1e-4	-9.439e+00	0.0005	5553.0	45.71%	16165.6	44.01%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-4	-9.405e+00	0.0005	111.0	0.91%	229.3	0.62%
TGA2(bZIP)/colamp-TGA2-DAP-Seq(GSE60143)/Homer	ACGTCAYCHH	1e-4	-9.356e+00	0.0005	610.0	5.02%	1583.8	4.31%
SPL13(SBP)/col-SPL13-DAP-Seq(GSE60143)/Homer	WAHTGTACGGAH	1e-4	-9.329e+00	0.0005	146.0	1.20%	318.3	0.87%
ESE1(AP2EREBP)/col-ESE1-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e-4	-9.320e+00	0.0005	3206.0	26.39%	9150.8	24.91%
SPL14(SBP)/col-SPL14-DAP-Seq(GSE60143)/Homer	NNWHTGTACGGAHNH	1e-4	-9.300e+00	0.0005	245.0	2.02%	578.8	1.58%
At4g16750(AP2EREBP)/col-At4g16750-DAP-Seq(GSE60143)/Homer	HACCGACAHA	1e-3	-9.143e+00	0.0006	901.0	7.42%	2412.7	6.57%
At5g04390(C2H2)/col200-At5g04390-DAP-Seq(GSE60143)/Homer	AGTGANDN	1e-3	-9.102e+00	0.0006	5269.0	43.37%	15324.9	41.72%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-3	-9.078e+00	0.0006	349.0	2.87%	862.3	2.35%
TGA4(bZIP)/colamp-TGA4-DAP-Seq(GSE60143)/Homer	RTGACGTCAKCW	1e-3	-9.065e+00	0.0006	275.0	2.26%	661.7	1.80%
MYB65(MYB)/colamp-MYB65-DAP-Seq(GSE60143)/Homer	RACNGTTA	1e-3	-9.025e+00	0.0006	1333.0	10.97%	3658.2	9.96%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-3	-8.904e+00	0.0007	261.0	2.15%	625.4	1.70%
SPL3(SBP)/colamp-SPL3-DAP-Seq(GSE60143)/Homer	WDTTGTACGGAH	1e-3	-8.860e+00	0.0007	70.0	0.58%	132.4	0.36%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-3	-8.554e+00	0.0010	987.0	8.12%	2671.3	7.27%
ERF1(AP2EREBP)/colamp-ERF1-DAP-Seq(GSE60143)/Homer	GGCGGCTR	1e-3	-8.394e+00	0.0012	2641.0	21.74%	7510.8	20.45%
CAMTA1(CAMTA)/col-CAMTA1-DAP-Seq(GSE60143)/Homer	WWAACGCGTT	1e-3	-8.311e+00	0.0013	991.0	8.16%	2688.5	7.32%
AT4G26030(C2H2)/col-AT4G26030-DAP-Seq(GSE60143)/Homer	BYYACCWACY	1e-3	-8.032e+00	0.0017	796.0	6.55%	2135.4	5.81%
MYB118(MYB)/colamp-MYB118-DAP-Seq(GSE60143)/Homer	TAWCCGTTAC	1e-3	-7.975e+00	0.0018	346.0	2.85%	868.2	2.36%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-3	-7.951e+00	0.0018	1874.0	15.43%	5266.8	14.34%
AT2G20110(CPP)/colamp-AT2G20110-DAP-Seq(GSE60143)/Homer	ATTYAAATHY	1e-3	-7.907e+00	0.0019	1212.0	9.98%	3336.6	9.08%
ERF104(AP2EREBP)/col-ERF104-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e-3	-7.832e+00	0.0020	3658.0	30.11%	10552.8	28.73%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-3	-7.801e+00	0.0021	91.0	0.75%	189.8	0.52%
SPL9(SBP)/colamp-SPL9-DAP-Seq(GSE60143)/Homer	BTGTACTT	1e-3	-7.729e+00	0.0022	2352.0	19.36%	6680.4	18.19%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-3	-7.718e+00	0.0022	284.0	2.34%	701.5	1.91%
Rap210(AP2EREBP)/col-Rap210-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e-3	-7.707e+00	0.0022	795.0	6.54%	2139.1	5.82%
MYB88(MYB)/col-MYB88-DAP-Seq(GSE60143)/Homer	HNACGCTCCT	1e-3	-7.669e+00	0.0023	4101.0	33.76%	11882.3	32.35%
DREB26(AP2EREBP)/col-DREB26-DAP-Seq(GSE60143)/Homer	CCACCGACAH	1e-3	-7.665e+00	0.0023	479.0	3.94%	1243.7	3.39%
ASHR1(ND)/col-ASHR1-DAP-Seq(GSE60143)/Homer	NTGGTGAN	1e-3	-7.652e+00	0.0023	1140.0	9.38%	3134.6	8.53%
EMB1789(C3H)/col-EMB1789-DAP-Seq(GSE60143)/Homer	TWTTTACCGYND	1e-3	-7.628e+00	0.0023	371.0	3.05%	942.6	2.57%
SPL1(SBP)/colamp-SPL1-DAP-Seq(GSE60143)/Homer	HYGTACDTWH	1e-3	-7.577e+00	0.0025	2021.0	16.64%	5710.1	15.54%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-3	-7.553e+00	0.0025	44.0	0.36%	77.6	0.21%
At2g44940(AP2EREBP)/colamp-At2g44940-DAP-Seq(GSE60143)/Homer	NYACCGACAHNNNNN	1e-3	-7.537e+00	0.0025	248.0	2.04%	605.0	1.65%
HuR(?)/HEK293-HuR-CLIP-Seq(GSE87887)/Homer	BTTTGGTTTG	1e-3	-7.523e+00	0.0026	3353.0	27.60%	9656.8	26.29%
MYB3(MYB)/Arabidopsis-MYB3-ChIP-Seq(GSE80564)/Homer	GKTAGGTRGG	1e-3	-7.494e+00	0.0026	1481.0	12.19%	4130.6	11.24%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-3	-7.478e+00	0.0026	593.0	4.88%	1568.7	4.27%
MYB51(MYB)/col-MYB51-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e-3	-7.368e+00	0.0029	739.0	6.08%	1986.9	5.41%
AT3G60490(AP2EREBP)/colamp-AT3G60490-DAP-Seq(GSE60143)/Homer	NNRCCGACANNNNNN	1e-3	-7.338e+00	0.0030	372.0	3.06%	949.1	2.58%
bHLH10(bHLH)/colamp-bHLH10-DAP-Seq(GSE60143)/Homer	YACCGACA	1e-3	-7.032e+00	0.0041	394.0	3.24%	1015.1	2.76%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-3	-6.998e+00	0.0042	242.0	1.99%	595.7	1.62%
At1g14580(C2H2)/colamp-At1g14580-DAP-Seq(GSE60143)/Homer	CASAAAAMGACAAAA	1e-3	-6.922e+00	0.0045	131.0	1.08%	298.3	0.81%
CAMTA5(CAMTA)/col-CAMTA5-DAP-Seq(GSE60143)/Homer	ACGCGTTTTANACRC	1e-2	-6.842e+00	0.0048	389.0	3.20%	1004.0	2.73%
CBF2(AP2EREBP)/colamp-CBF2-DAP-Seq(GSE60143)/Homer	YBRCCGACATNNNNN	1e-2	-6.752e+00	0.0053	500.0	4.12%	1318.3	3.59%
MYB81(MYB)/col-MYB81-DAP-Seq(GSE60143)/Homer	NWAACSGWTWNN	1e-2	-6.706e+00	0.0055	1594.0	13.12%	4485.4	12.21%
LBD13(LOBAS2)/colamp-LBD13-DAP-Seq(GSE60143)/Homer	KCCGTNWTTTBCGGC	1e-2	-6.681e+00	0.0056	1697.0	13.97%	4788.5	13.04%
MYB44(MYB)/colamp-MYB44-DAP-Seq(GSE60143)/Homer	CVGTTWWKTCNGTTA	1e-2	-6.677e+00	0.0056	69.0	0.57%	141.0	0.38%
MYB107(MYB)/col-MYB107-DAP-Seq(GSE60143)/Homer	RGTWGGTRRR	1e-2	-6.657e+00	0.0057	1272.0	10.47%	3545.2	9.65%
ANAC038(NAC)/col-ANAC038-DAP-Seq(GSE60143)/Homer	ACACGTWAYC	1e-2	-6.519e+00	0.0065	2087.0	17.18%	5942.4	16.18%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e-2	-6.502e+00	0.0066	847.0	6.97%	2316.5	6.31%
MYB55(MYB)/colamp-MYB55-DAP-Seq(GSE60143)/Homer	YACCWAMC	1e-2	-6.438e+00	0.0070	906.0	7.46%	2488.2	6.77%
ANAC046(NAC)/colamp-ANAC046-DAP-Seq(GSE60143)/Homer	ACACGYWAYC	1e-2	-6.392e+00	0.0073	1923.0	15.83%	5463.5	14.87%
DDF2(AP2EREBP)/col-DDF2-DAP-Seq(GSE60143)/Homer	GATGTCGRCR	1e-2	-6.382e+00	0.0073	47.0	0.39%	90.0	0.24%
MYB58(MYB)/colamp-MYB58-DAP-Seq(GSE60143)/Homer	YYYACCWACC	1e-2	-6.354e+00	0.0075	759.0	6.25%	2066.9	5.63%
MYB73(MYB)/col-MYB73-DAP-Seq(GSE60143)/Homer	NNNNHAACNGHHDHN	1e-2	-6.341e+00	0.0076	2060.0	16.96%	5869.6	15.98%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-2	-6.276e+00	0.0080	106.0	0.87%	238.2	0.65%
MYB98(MYB)/col-MYB98-DAP-Seq(GSE60143)/Homer	NWDCCGTTAC	1e-2	-6.276e+00	0.0080	349.0	2.87%	901.8	2.45%
CBF1(AP2EREBP)/colamp-CBF1-DAP-Seq(GSE60143)/Homer	YRCCGACATN	1e-2	-6.265e+00	0.0080	802.0	6.60%	2192.2	5.97%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e-2	-6.239e+00	0.0082	724.0	5.96%	1968.0	5.36%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e-2	-6.157e+00	0.0089	1632.0	13.43%	4616.0	12.57%
SeqBias: G/A bias	RRRRRRRRRR	1e-2	-6.126e+00	0.0091	12133.0	99.88%	36645.5	99.76%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e-2	-6.091e+00	0.0094	282.0	2.32%	717.6	1.95%
ANAC079(NAC)/colamp-ANAC079-DAP-Seq(GSE60143)/Homer	TACACGCAACCT	1e-2	-6.088e+00	0.0094	391.0	3.22%	1022.7	2.78%
SeqBias: TA-repeat	TATATATATA	1e-2	-6.084e+00	0.0094	2192.0	18.04%	6269.3	17.07%
SeqBias: C/A-bias	MMMMMMMMMM	1e-2	-6.084e+00	0.0094	12097.0	99.58%	36509.8	99.39%
PUCHI(AP2EREBP)/colamp-PUCHI-DAP-Seq(GSE60143)/Homer	GCGCCGTY	1e-2	-6.049e+00	0.0096	3173.0	26.12%	9184.7	25.00%
GRF9(GRF)/colamp-GRF9-DAP-Seq(GSE60143)/Homer	NWCTGACANNNNNNN	1e-2	-6.045e+00	0.0096	908.0	7.47%	2504.3	6.82%
At4g28140(AP2EREBP)/colamp-At4g28140-DAP-Seq(GSE60143)/Homer	DCCACCGACCAW	1e-2	-6.028e+00	0.0097	479.0	3.94%	1272.9	3.46%
AT1G47655(C2C2dof)/colamp-AT1G47655-DAP-Seq(GSE60143)/Homer	YHACTTTTTS	1e-2	-6.010e+00	0.0099	3530.0	29.06%	10251.1	27.91%
At1g22810(AP2EREBP)/colamp-At1g22810-DAP-Seq(GSE60143)/Homer	BCACCGACANNN	1e-2	-5.959e+00	0.0104	611.0	5.03%	1650.3	4.49%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-2	-5.955e+00	0.0104	1489.0	12.26%	4202.9	11.44%
MYB119(MYB)/colamp-MYB119-DAP-Seq(GSE60143)/Homer	YRACCGTTACDD	1e-2	-5.859e+00	0.0113	327.0	2.69%	846.6	2.30%
DDF1(AP2EREBP)/col-DDF1-DAP-Seq(GSE60143)/Homer	GCCGACAT	1e-2	-5.854e+00	0.0114	450.0	3.70%	1193.5	3.25%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-2	-5.835e+00	0.0115	966.0	7.95%	2678.1	7.29%
CDM1(C3H)/colamp-CDM1-DAP-Seq(GSE60143)/Homer	CCGAWAWTWTCGGAN	1e-2	-5.769e+00	0.0123	91.0	0.75%	203.2	0.55%
At4g31060(AP2EREBP)/colamp-At4g31060-DAP-Seq(GSE60143)/Homer	CACCGACAAW	1e-2	-5.733e+00	0.0127	497.0	4.09%	1329.3	3.62%
At4g32800(AP2EREBP)/colamp-At4g32800-DAP-Seq(GSE60143)/Homer	DYCACCGACAHWWWH	1e-2	-5.675e+00	0.0133	138.0	1.14%	328.0	0.89%
OBP3(C2C2dof)/col-OBP3-DAP-Seq(GSE60143)/Homer	NYWACTTTTT	1e-2	-5.649e+00	0.0136	3053.0	25.13%	8845.8	24.08%
MYB93(MYB)/colamp-MYB93-DAP-Seq(GSE60143)/Homer	GGTAGGTGRD	1e-2	-5.634e+00	0.0138	879.0	7.24%	2431.9	6.62%
NLP7(RWPRK)/col-NLP7-DAP-Seq(GSE60143)/Homer	TGRCCYTTCR	1e-2	-5.604e+00	0.0142	1645.0	13.54%	4673.9	12.72%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-2	-5.599e+00	0.0142	269.0	2.21%	688.9	1.88%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-2	-5.551e+00	0.0148	1539.0	12.67%	4363.9	11.88%
TGA1(bZIP)/colamp-TGA1-DAP-Seq(GSE60143)/Homer	TGACGTCAKC	1e-2	-5.540e+00	0.0149	366.0	3.01%	961.5	2.62%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-2	-5.510e+00	0.0153	1788.0	14.72%	5098.3	13.88%
MYB30(MYB)/colamp-MYB30-DAP-Seq(GSE60143)/Homer	AGGTAGTTGG	1e-2	-5.476e+00	0.0158	822.0	6.77%	2270.3	6.18%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e-2	-5.460e+00	0.0159	126.0	1.04%	298.5	0.81%
ERF73(AP2EREBP)/col-ERF73-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e-2	-5.450e+00	0.0160	2926.0	24.09%	8476.0	23.07%
MYB99(MYB)/colamp-MYB99-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e-2	-5.407e+00	0.0167	744.0	6.12%	2046.6	5.57%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-2	-5.304e+00	0.0184	397.0	3.27%	1053.5	2.87%
MYB67(MYB)/col-MYB67-DAP-Seq(GSE60143)/Homer	YYYACCTAAC	1e-2	-5.188e+00	0.0206	780.0	6.42%	2156.6	5.87%
AT5G47660(Trihelix)/colamp-AT5G47660-DAP-Seq(GSE60143)/Homer	AWTTTTACCG	1e-2	-5.188e+00	0.0206	1327.0	10.92%	3753.6	10.22%
OBP1(C2C2dof)/col-OBP1-DAP-Seq(GSE60143)/Homer	NHHACTTTWT	1e-2	-5.003e+00	0.0246	2811.0	23.14%	8155.6	22.20%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-2	-4.953e+00	0.0257	965.0	7.94%	2701.9	7.36%
LEP(AP2EREBP)/col-LEP-DAP-Seq(GSE60143)/Homer	CDCCGCCGTC	1e-2	-4.883e+00	0.0275	1659.0	13.66%	4742.0	12.91%
ASL18(LOBAS2)/colamp-ASL18-DAP-Seq(GSE60143)/Homer	CCGGAAAWTCMGGAR	1e-2	-4.855e+00	0.0282	1968.0	16.20%	5657.6	15.40%
AT5G66940(C2C2dof)/col-AT5G66940-DAP-Seq(GSE60143)/Homer	NNHACTTTWT	1e-2	-4.854e+00	0.0282	1943.0	15.99%	5583.6	15.20%
TINY(AP2EREBP)/col-TINY-DAP-Seq(GSE60143)/Homer	NNCACCGACA	1e-2	-4.825e+00	0.0288	354.0	2.91%	940.0	2.56%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e-2	-4.814e+00	0.0290	11.0	0.09%	14.8	0.04%
AT1G77200(AP2EREBP)/colamp-AT1G77200-DAP-Seq(GSE60143)/Homer	ACCGACAHWD	1e-2	-4.805e+00	0.0291	899.0	7.40%	2513.9	6.84%
AT2G28810(C2C2dof)/colamp-AT2G28810-DAP-Seq(GSE60143)/Homer	VAAAAAGTWA	1e-2	-4.736e+00	0.0311	2211.0	18.20%	6383.9	17.38%
TGA6(bZIP)/colamp-TGA6-DAP-Seq(GSE60143)/Homer	TGACGTCABC	1e-2	-4.661e+00	0.0334	572.0	4.71%	1568.7	4.27%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-2	-4.639e+00	0.0340	1433.0	11.80%	4085.7	11.12%
ARF2(ARF)/col-ARF2-DAP-Seq(GSE60143)/Homer	TTGTCGGMWN	1e-1	-4.574e+00	0.0362	2739.0	22.55%	7962.1	21.67%
TRP2(MYBrelated)/colamp-TRP2-DAP-Seq(GSE60143)/Homer	TAAACCCT	1e-1	-4.538e+00	0.0373	128.0	1.05%	313.7	0.85%
SeqBias: GA-repeat	GAGAGAGAGA	1e-1	-4.345e+00	0.0451	6620.0	54.49%	19647.1	53.48%
ANAC042(NAC)/col-ANAC042-DAP-Seq(GSE60143)/Homer	CGTNDHNDHNACGKY	1e-1	-4.338e+00	0.0453	2038.0	16.78%	5888.2	16.03%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-1	-4.328e+00	0.0456	595.0	4.90%	1643.6	4.47%
ANAC094(NAC)/col-ANAC094-DAP-Seq(GSE60143)/Homer	DVCGTRNNNNNYACG	1e-1	-4.280e+00	0.0476	854.0	7.03%	2398.8	6.53%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e-1	-4.224e+00	0.0502	932.0	7.67%	2628.4	7.15%
AT3G57600(AP2EREBP)/col-AT3G57600-DAP-Seq(GSE60143)/Homer	GGCGGTGG	1e-1	-4.189e+00	0.0517	2698.0	22.21%	7860.5	21.40%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-1	-4.156e+00	0.0533	591.0	4.86%	1636.4	4.45%
CDF3(C2C2dof)/colamp-CDF3-DAP-Seq(GSE60143)/Homer	AAAAGTRM	1e-1	-4.154e+00	0.0533	1704.0	14.03%	4906.9	13.36%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e-1	-4.154e+00	0.0533	2066.0	17.01%	5980.4	16.28%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e-1	-4.146e+00	0.0533	3560.0	29.31%	10440.8	28.42%
ATHB15(HB)/col-ATHB15-DAP-Seq(GSE60143)/Homer	GYAATSATTA	1e-1	-4.086e+00	0.0564	216.0	1.78%	563.9	1.53%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-1	-4.049e+00	0.0583	710.0	5.84%	1985.1	5.40%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e-1	-4.016e+00	0.0600	3511.0	28.90%	10301.1	28.04%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-1	-4.012e+00	0.0600	1802.0	14.83%	5203.1	14.16%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e-1	-3.949e+00	0.0637	675.0	5.56%	1886.7	5.14%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-1	-3.922e+00	0.0652	121.0	1.00%	301.1	0.82%
MYB17(MYB)/colamp-MYB17-DAP-Seq(GSE60143)/Homer	GGTAGGTGRG	1e-1	-3.839e+00	0.0706	409.0	3.37%	1118.5	3.04%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-1	-3.777e+00	0.0748	835.0	6.87%	2359.9	6.42%
dof24(C2C2dof)/col-dof24-DAP-Seq(GSE60143)/Homer	TWMCTTTTTG	1e-1	-3.776e+00	0.0748	1987.0	16.36%	5764.9	15.69%
AT3G16280(AP2EREBP)/colamp-AT3G16280-DAP-Seq(GSE60143)/Homer	HCACCGACAHHDHHN	1e-1	-3.768e+00	0.0750	398.0	3.28%	1088.5	2.96%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e-1	-3.731e+00	0.0775	30.0	0.25%	61.8	0.17%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-1	-3.725e+00	0.0778	178.0	1.47%	462.2	1.26%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-1	-3.724e+00	0.0778	971.0	7.99%	2760.9	7.52%
BIM3(bHLH)/col-BIM3-DAP-Seq(GSE60143)/Homer	TWVTCACGTGAB	1e-1	-3.723e+00	0.0778	149.0	1.23%	381.7	1.04%
RAP21(AP2EREBP)/colamp-RAP21-DAP-Seq(GSE60143)/Homer	BCACCGACAHNN	1e-1	-3.699e+00	0.0789	207.0	1.70%	544.1	1.48%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e-1	-3.692e+00	0.0792	97.0	0.80%	238.8	0.65%
ATY13(MYB)/col-ATY13-DAP-Seq(GSE60143)/Homer	YYYAACYRHH	1e-1	-3.653e+00	0.0821	3158.0	26.00%	9266.7	25.23%
MYB70(MYB)/col-MYB70-DAP-Seq(GSE60143)/Homer	WTAACNGTTA	1e-1	-3.634e+00	0.0834	1537.0	12.65%	4435.7	12.07%
ANAC045(NAC)/col-ANAC045-DAP-Seq(GSE60143)/Homer	DNCKTVNNNNNNAMG	1e-1	-3.574e+00	0.0882	1778.0	14.64%	5153.5	14.03%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-1	-3.571e+00	0.0882	208.0	1.71%	549.1	1.49%
At1g77640(AP2EREBP)/col-At1g77640-DAP-Seq(GSE60143)/Homer	TGTCGGTGGA	1e-1	-3.527e+00	0.0919	299.0	2.46%	809.7	2.20%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-1	-3.527e+00	0.0919	3765.0	30.99%	11094.5	30.20%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e-1	-3.486e+00	0.0951	205.0	1.69%	542.2	1.48%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-1	-3.485e+00	0.0951	1952.0	16.07%	5675.0	15.45%
At5g62940(C2C2dof)/col-At5g62940-DAP-Seq(GSE60143)/Homer	WHWHHACTTTTT	1e-1	-3.474e+00	0.0956	3216.0	26.47%	9451.8	25.73%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e-1	-3.464e+00	0.0962	625.0	5.14%	1755.1	4.78%
AtHB32(ZFHD)/col200-AtHB32-DAP-Seq(GSE60143)/Homer	CGAATTAT	1e-1	-3.403e+00	0.1020	1032.0	8.50%	2952.0	8.04%
ERF38(AP2EREBP)/col-ERF38-DAP-Seq(GSE60143)/Homer	CACCGACA	1e-1	-3.395e+00	0.1024	640.0	5.27%	1801.4	4.90%
MYB40(MYB)/col-MYB40-DAP-Seq(GSE60143)/Homer	TGGTAGGTRARA	1e-1	-3.376e+00	0.1040	243.0	2.00%	652.7	1.78%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-1	-3.321e+00	0.1095	98.0	0.81%	245.7	0.67%
Adof1(C2C2dof)/col-Adof1-DAP-Seq(GSE60143)/Homer	NRWAAAGYDV	1e-1	-3.290e+00	0.1126	2711.0	22.32%	7952.0	21.65%
bHLH157(bHLH)/col-bHLH157-DAP-Seq(GSE60143)/Homer	KACACGTCTCTY	1e-1	-3.193e+00	0.1236	213.0	1.75%	570.8	1.55%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-1	-3.190e+00	0.1237	754.0	6.21%	2142.7	5.83%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-1	-3.185e+00	0.1238	487.0	4.01%	1361.9	3.71%
ZML1(C2C2gata)/colamp-ZML1-DAP-Seq(GSE60143)/Homer	ATCWYRACCGTTSRW	1e-1	-3.132e+00	0.1301	10.0	0.08%	16.8	0.05%
HSFA6A(HSF)/col-HSFA6A-DAP-Seq(GSE60143)/Homer	RGAAGNTTCTAGAAN	1e-1	-3.107e+00	0.1330	21.0	0.17%	42.3	0.12%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-1	-3.088e+00	0.1351	157.0	1.29%	413.9	1.13%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-1	-3.009e+00	0.1459	410.0	3.38%	1142.9	3.11%
AT4G27900(C2C2COlike)/col-AT4G27900-DAP-Seq(GSE60143)/Homer	TCTCVACCGTTSATT	1e-1	-2.972e+00	0.1509	5.0	0.04%	6.6	0.02%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-1	-2.764e+00	0.1850	569.0	4.68%	1614.2	4.39%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-1	-2.761e+00	0.1852	634.0	5.22%	1805.5	4.92%
BBX31(Orphan)/col-BBX31-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e-1	-2.749e+00	0.1867	1487.0	12.24%	4331.7	11.79%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-1	-2.749e+00	0.1867	848.0	6.98%	2436.2	6.63%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-1	-2.729e+00	0.1893	51.0	0.42%	123.7	0.34%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e-1	-2.722e+00	0.1900	19.0	0.16%	39.4	0.11%
MYB92(MYB)/colamp-MYB92-DAP-Seq(GSE60143)/Homer	GGTAGGTR	1e-1	-2.717e+00	0.1904	834.0	6.87%	2396.5	6.52%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e-1	-2.646e+00	0.2037	8.0	0.07%	13.3	0.04%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e-1	-2.642e+00	0.2040	97.0	0.80%	251.7	0.69%
MGP(C2H2)/colamp-MGP-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTW	1e-1	-2.639e+00	0.2040	176.0	1.45%	475.3	1.29%
NUC(C2H2)/col-NUC-DAP-Seq(GSE60143)/Homer	HAVAAAACGACAAAA	1e-1	-2.629e+00	0.2053	62.0	0.51%	154.2	0.42%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e-1	-2.625e+00	0.2055	878.0	7.23%	2530.5	6.89%
ZIM(C2C2gata)/col-ZIM-DAP-Seq(GSE60143)/Homer	ATCSRACGGTYRAGA	1e-1	-2.613e+00	0.2074	11.0	0.09%	20.4	0.06%
IDD5(C2H2)/colamp-IDD5-DAP-Seq(GSE60143)/Homer	TTTTGTCTTTTTBTK	1e-1	-2.597e+00	0.2101	520.0	4.28%	1476.1	4.02%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-1	-2.581e+00	0.2127	354.0	2.91%	991.1	2.70%
FEA4(bZIP)/Corn-FEA4-ChIP-Seq(GSE61954)/Homer	TGACGTCACS	1e-1	-2.530e+00	0.2233	1048.0	8.63%	3038.3	8.27%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-1	-2.519e+00	0.2251	124.0	1.02%	329.8	0.90%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-1	-2.505e+00	0.2275	913.0	7.52%	2639.5	7.19%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-1	-2.497e+00	0.2287	410.0	3.38%	1157.9	3.15%
ATHB33(ZFHD)/col-ATHB33-DAP-Seq(GSE60143)/Homer	NGTRATTAAK	1e-1	-2.478e+00	0.2322	1165.0	9.59%	3388.5	9.22%
RKD2(RWPRK)/colamp-RKD2-DAP-Seq(GSE60143)/Homer	GACKTTTCRDCTTCC	1e-1	-2.451e+00	0.2379	538.0	4.43%	1535.0	4.18%
AT1G44830(AP2EREBP)/col-AT1G44830-DAP-Seq(GSE60143)/Homer	NCCACCGACA	1e-1	-2.424e+00	0.2438	573.0	4.72%	1638.7	4.46%
COG1(C2C2dof)/col-COG1-DAP-Seq(GSE60143)/Homer	DAAAAAGTGA	1e-1	-2.401e+00	0.2487	1288.0	10.60%	3758.9	10.23%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-1	-2.365e+00	0.2571	81.0	0.67%	210.3	0.57%
At1g64620(C2C2dof)/colamp-At1g64620-DAP-Seq(GSE60143)/Homer	CACTTTTT	1e-1	-2.354e+00	0.2590	1466.0	12.07%	4291.9	11.68%
JKD(C2H2)/col-JKD-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTT	1e-1	-2.340e+00	0.2621	138.0	1.14%	372.2	1.01%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-1	-2.339e+00	0.2621	2685.0	22.10%	7939.8	21.61%
HDG1(Homeobox)/col100-HDG1-DAP-Seq(GSE60143)/Homer	DDYAATTAATGH	1e-1	-2.337e+00	0.2621	473.0	3.89%	1347.1	3.67%
CBF4(AP2EREBP)/colamp-CBF4-DAP-Seq(GSE60143)/Homer	NRCCGACDWNNNNNN	1e0	-2.288e+00	0.2736	707.0	5.82%	2039.5	5.55%
MYB96(MYB)/colamp-MYB96-DAP-Seq(GSE60143)/Homer	WGGTRGTTGG	1e0	-2.258e+00	0.2812	623.0	5.13%	1792.0	4.88%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-2.244e+00	0.2842	144.0	1.19%	391.1	1.06%
AT3G12130(C3H)/colamp-AT3G12130-DAP-Seq(GSE60143)/Homer	TMACTTTTTV	1e0	-2.231e+00	0.2870	2270.0	18.69%	6703.9	18.25%
AIL7(AP2EREBP)/colamp-AIL7-DAP-Seq(GSE60143)/Homer	KCACRAWTYYCGAGG	1e0	-2.199e+00	0.2957	332.0	2.73%	938.1	2.55%
SPL11(SBP)/col100-SPL11-DAP-Seq(GSE60143)/Homer	YTGTACTTBH	1e0	-2.182e+00	0.2999	604.0	4.97%	1739.6	4.74%
AT1G10720(BSD)/col-AT1G10720-DAP-Seq(GSE60143)/Homer	TTCTAGAAKCTTCTA	1e0	-2.128e+00	0.3153	13.0	0.11%	27.1	0.07%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-2.125e+00	0.3154	109.0	0.90%	293.8	0.80%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-2.105e+00	0.3209	159.0	1.31%	437.1	1.19%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	-2.104e+00	0.3209	12147.0	99.99%	36724.9	99.97%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-2.096e+00	0.3221	267.0	2.20%	751.4	2.05%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-2.067e+00	0.3305	1151.0	9.47%	3369.1	9.17%
AT1G24250(Orphan)/col-AT1G24250-DAP-Seq(GSE60143)/Homer	KTDGTTGGTDGTTGG	1e0	-2.054e+00	0.3340	189.0	1.56%	525.4	1.43%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-2.047e+00	0.3354	1110.0	9.14%	3248.4	8.84%
AT3G52440(C2C2dof)/colamp-AT3G52440-DAP-Seq(GSE60143)/Homer	DTHACTTTTT	1e0	-2.040e+00	0.3369	2123.0	17.48%	6277.7	17.09%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-2.020e+00	0.3425	552.0	4.54%	1592.3	4.33%
VND6(NAC)/col-VND6-DAP-Seq(GSE60143)/Homer	DCTTNHTTTTYAMGY	1e0	-2.015e+00	0.3433	884.0	7.28%	2577.1	7.02%
AT1G23810(Orphan)/col-AT1G23810-DAP-Seq(GSE60143)/Homer	TTCTAGAAGSTTCTA	1e0	-1.996e+00	0.3488	26.0	0.21%	62.1	0.17%
GTL1(Trihelix)/colamp-GTL1-DAP-Seq(GSE60143)/Homer	WWTTTACCKY	1e0	-1.971e+00	0.3570	984.0	8.10%	2877.1	7.83%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-1.968e+00	0.3570	388.0	3.19%	1110.2	3.02%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-1.913e+00	0.3759	747.0	6.15%	2175.4	5.92%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-1.884e+00	0.3859	89.0	0.73%	240.3	0.65%
AT5G63260(C3H)/col-AT5G63260-DAP-Seq(GSE60143)/Homer	RAAAAAGTRA	1e0	-1.875e+00	0.3885	2181.0	17.95%	6464.6	17.60%
PHV(HB)/col-PHV-DAP-Seq(GSE60143)/Homer	RTAATSATTA	1e0	-1.872e+00	0.3885	246.0	2.03%	696.0	1.89%
HSFB4(HSF)/col-HSFB4-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-1.851e+00	0.3956	20.0	0.16%	47.4	0.13%
AtIDD11(C2H2)/colamp-AtIDD11-DAP-Seq(GSE60143)/Homer	TTTGTCGTTT	1e0	-1.844e+00	0.3973	258.0	2.12%	732.6	1.99%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-1.836e+00	0.3994	277.0	2.28%	788.2	2.15%
MYB33(MYB)/col-MYB33-DAP-Seq(GSE60143)/Homer	DDTYNGTTAN	1e0	-1.815e+00	0.4067	1621.0	13.34%	4790.1	13.04%
bZIP44(bZIP)/colamp-bZIP44-DAP-Seq(GSE60143)/Homer	NDTGCCACGTCAGCH	1e0	-1.721e+00	0.4457	20.0	0.16%	48.4	0.13%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-1.711e+00	0.4492	5.0	0.04%	9.7	0.03%
ATHB20(Homeobox)/colamp-ATHB20-DAP-Seq(GSE60143)/Homer	CAATHATT	1e0	-1.700e+00	0.4529	303.0	2.49%	869.7	2.37%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.677e+00	0.4621	104.0	0.86%	287.4	0.78%
AGL6(MADS)/col-AGL6-DAP-Seq(GSE60143)/Homer	TTWCCWWAWWDGGWA	1e0	-1.647e+00	0.4746	91.0	0.75%	250.7	0.68%
LOB(LOBAS2)/col-LOB-DAP-Seq(GSE60143)/Homer	CGCCGKAWWTTHCGS	1e0	-1.638e+00	0.4777	630.0	5.19%	1841.3	5.01%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.635e+00	0.4782	431.0	3.55%	1250.4	3.40%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e0	-1.628e+00	0.4800	161.0	1.33%	454.7	1.24%
AT1G69570(C2C2dof)/col-AT1G69570-DAP-Seq(GSE60143)/Homer	WAAAAGTGHH	1e0	-1.617e+00	0.4844	1087.0	8.95%	3206.9	8.73%
MYB113(MYB)/col-MYB113-DAP-Seq(GSE60143)/Homer	HNDAWTCMGTTAYWN	1e0	-1.616e+00	0.4844	455.0	3.75%	1322.9	3.60%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.613e+00	0.4844	16.0	0.13%	38.1	0.10%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.584e+00	0.4963	103.0	0.85%	286.3	0.78%
At2g41835(C2H2)/col-At2g41835-DAP-Seq(GSE60143)/Homer	TTTGAAAA	1e0	-1.580e+00	0.4969	411.0	3.38%	1193.8	3.25%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-1.554e+00	0.5091	602.0	4.96%	1762.7	4.80%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-1.547e+00	0.5112	163.0	1.34%	462.1	1.26%
bZIP69(bZIP)/col-bZIP69-DAP-Seq(GSE60143)/Homer	GACAGCTGKCAW	1e0	-1.531e+00	0.5183	128.0	1.05%	360.6	0.98%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-1.523e+00	0.5211	118.0	0.97%	331.7	0.90%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.521e+00	0.5211	289.0	2.38%	834.3	2.27%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-1.515e+00	0.5221	779.0	6.41%	2292.8	6.24%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e0	-1.505e+00	0.5264	493.0	4.06%	1440.2	3.92%
DEAR5(AP2EREBP)/col-DEAR5-DAP-Seq(GSE60143)/Homer	NDWTGTCGGTGRWDN	1e0	-1.504e+00	0.5264	199.0	1.64%	569.2	1.55%
ANAC083(NAC)/col-ANAC083-DAP-Seq(GSE60143)/Homer	CKTRWNNNWYAMGTA	1e0	-1.435e+00	0.5613	562.0	4.63%	1650.0	4.49%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-1.433e+00	0.5613	5.0	0.04%	11.0	0.03%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.398e+00	0.5797	19.0	0.16%	48.2	0.13%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-1.397e+00	0.5797	459.0	3.78%	1344.1	3.66%
Knotted(Homeobox)/Corn-KN1-ChIP-Seq(GSE39161)/Homer	GAYGNGACRGGN	1e0	-1.386e+00	0.5835	1411.0	11.62%	4194.7	11.42%
GT2(Trihelix)/colamp-GT2-DAP-Seq(GSE60143)/Homer	AMGGTAAAWWWN	1e0	-1.368e+00	0.5929	950.0	7.82%	2813.9	7.66%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-1.350e+00	0.6018	58.0	0.48%	160.8	0.44%
TCP1(TCP)/col-TCP1-DAP-Seq(GSE60143)/Homer	GGGGGCCCMMCN	1e0	-1.333e+00	0.6109	331.0	2.72%	966.7	2.63%
bZIP42(bZIP)/colamp-bZIP42-DAP-Seq(GSE60143)/Homer	GCCACGTCAGCA	1e0	-1.295e+00	0.6330	4.0	0.03%	8.8	0.02%
ATY19(MYB)/col-ATY19-DAP-Seq(GSE60143)/Homer	YYCACCWACCAT	1e0	-1.295e+00	0.6330	536.0	4.41%	1579.1	4.30%
AT5G59990(C2C2COlike)/colamp-AT5G59990-DAP-Seq(GSE60143)/Homer	TCTCAACCGTTCATT	1e0	-1.293e+00	0.6330	14.0	0.12%	35.3	0.10%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-1.267e+00	0.6458	1.0	0.01%	0.9	0.00%
AGL25(MADS)/colamp-AGL25-DAP-Seq(GSE60143)/Homer	TTTCCATWTWTGGAA	1e0	-1.259e+00	0.6493	35.0	0.29%	96.0	0.26%
dof43(C2C2dof)/colamp-dof43-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e0	-1.253e+00	0.6520	1308.0	10.77%	3896.2	10.61%
AT5G22990(C2H2)/col-AT5G22990-DAP-Seq(GSE60143)/Homer	WCGAHDTCGWHN	1e0	-1.243e+00	0.6567	83.0	0.68%	235.1	0.64%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-1.235e+00	0.6607	299.0	2.46%	875.0	2.38%
ANAC070(NAC)/colamp-ANAC070-DAP-Seq(GSE60143)/Homer	CTTRHDNHNBAAGHW	1e0	-1.231e+00	0.6616	862.0	7.10%	2559.0	6.97%
AT1G01250(AP2EREBP)/col-AT1G01250-DAP-Seq(GSE60143)/Homer	YCACCGACAHTW	1e0	-1.218e+00	0.6686	110.0	0.91%	315.5	0.86%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-1.216e+00	0.6686	111.0	0.91%	318.5	0.87%
MYB61(MYB)/colamp-MYB61-DAP-Seq(GSE60143)/Homer	HCYACCTACC	1e0	-1.210e+00	0.6707	1145.0	9.43%	3410.5	9.28%
GT3a(Trihelix)/col-GT3a-DAP-Seq(GSE60143)/Homer	WNACACGTGTYWWAW	1e0	-1.199e+00	0.6763	143.0	1.18%	413.5	1.13%
DEAR3(AP2EREBP)/colamp-DEAR3-DAP-Seq(GSE60143)/Homer	BCACCGACAWNNNNN	1e0	-1.184e+00	0.6851	311.0	2.56%	913.4	2.49%
ANAC071(NAC)/col-ANAC071-DAP-Seq(GSE60143)/Homer	DNCKTNDNNNHNAAG	1e0	-1.181e+00	0.6855	632.0	5.20%	1873.2	5.10%
AT1G76880(Trihelix)/col-AT1G76880-DAP-Seq(GSE60143)/Homer	ACGGTAAAAW	1e0	-1.164e+00	0.6955	305.0	2.51%	896.8	2.44%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e0	-1.158e+00	0.6982	1617.0	13.31%	4834.5	13.16%
IDD2(C2H2)/colamp-IDD2-DAP-Seq(GSE60143)/Homer	HAVAAAAMGACAAAA	1e0	-1.147e+00	0.7042	87.0	0.72%	249.6	0.68%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-1.133e+00	0.7122	24.0	0.20%	65.1	0.18%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-1.132e+00	0.7122	340.0	2.80%	1002.4	2.73%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-1.111e+00	0.7248	135.0	1.11%	392.4	1.07%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-1.083e+00	0.7429	281.0	2.31%	828.5	2.26%
ATHB24(ZFHD)/colamp-ATHB24-DAP-Seq(GSE60143)/Homer	TAATTAAS	1e0	-1.060e+00	0.7586	641.0	5.28%	1908.7	5.20%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-1.060e+00	0.7586	629.0	5.18%	1872.7	5.10%
At3g45610(C2C2dof)/col-At3g45610-DAP-Seq(GSE60143)/Homer	TWACTTTTTS	1e0	-1.060e+00	0.7586	1348.0	11.10%	4034.0	10.98%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-1.042e+00	0.7670	77.0	0.63%	222.5	0.61%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-1.025e+00	0.7787	89.0	0.73%	258.4	0.70%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.016e+00	0.7839	196.0	1.61%	577.9	1.57%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-1.014e+00	0.7839	1017.0	8.37%	3043.0	8.28%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e0	-1.013e+00	0.7839	557.0	4.59%	1659.8	4.52%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-1.006e+00	0.7856	50.0	0.41%	143.0	0.39%
SeqBias: CG-repeat	CGCGCGCGCG	1e0	-9.962e-01	0.7918	4836.0	39.81%	14568.3	39.66%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-9.882e-01	0.7963	887.0	7.30%	2653.7	7.22%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e0	-9.690e-01	0.8099	112.0	0.92%	328.7	0.89%
SMB(NAC)/colamp-SMB-DAP-Seq(GSE60143)/Homer	CTTVNNNNDBAAGHW	1e0	-9.669e-01	0.8099	685.0	5.64%	2047.9	5.57%
HSFB3(HSF)/colamp-HSFB3-DAP-Seq(GSE60143)/Homer	TTCTAGAAGMTTHTW	1e0	-9.576e-01	0.8135	29.0	0.24%	82.7	0.23%
WRKY46(WRKY)/colamp-WRKY46-DAP-Seq(GSE60143)/Homer	AAAGTCAACGSN	1e0	-9.576e-01	0.8135	29.0	0.24%	82.0	0.22%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-9.489e-01	0.8187	161.0	1.33%	475.1	1.29%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-9.481e-01	0.8187	2150.0	17.70%	6464.1	17.60%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e0	-9.197e-01	0.8392	717.0	5.90%	2147.8	5.85%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-9.176e-01	0.8392	1809.0	14.89%	5439.8	14.81%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e0	-9.130e-01	0.8410	440.0	3.62%	1314.3	3.58%
HAT1(Homeobox)/col-HAT1-DAP-Seq(GSE60143)/Homer	SCAATCATTGNN	1e0	-9.120e-01	0.8410	97.0	0.80%	285.6	0.78%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-9.040e-01	0.8447	55.0	0.45%	160.1	0.44%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-9.007e-01	0.8456	27.0	0.22%	77.1	0.21%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-9.002e-01	0.8456	909.0	7.48%	2727.3	7.42%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-8.858e-01	0.8544	1407.0	11.58%	4230.1	11.52%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-8.805e-01	0.8571	922.0	7.59%	2768.4	7.54%
AT3G25990(Trihelix)/colamp-AT3G25990-DAP-Seq(GSE60143)/Homer	TTAACCATAG	1e0	-8.595e-01	0.8733	485.0	3.99%	1453.6	3.96%
AGL16(MADS)/col-AGL16-DAP-Seq(GSE60143)/Homer	TWCCHWATWDGGAAA	1e0	-8.569e-01	0.8736	62.0	0.51%	182.1	0.50%
SRS7(SRS)/colamp-SRS7-DAP-Seq(GSE60143)/Homer	HATAGGTTTH	1e0	-8.506e-01	0.8771	2453.0	20.19%	7392.7	20.12%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-8.376e-01	0.8867	2110.0	17.37%	6358.3	17.31%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e0	-8.171e-01	0.9030	551.0	4.54%	1656.0	4.51%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-8.130e-01	0.9047	314.0	2.58%	941.1	2.56%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-7.982e-01	0.9162	152.0	1.25%	454.6	1.24%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-7.923e-01	0.9195	1052.0	8.66%	3169.1	8.63%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-7.902e-01	0.9195	114.0	0.94%	340.7	0.93%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-7.848e-01	0.9225	399.0	3.28%	1199.1	3.26%
VND4(NAC)/colamp-VND4-DAP-Seq(GSE60143)/Homer	WRCTTGWANWWCAAG	1e0	-7.808e-01	0.9241	502.0	4.13%	1510.5	4.11%
VND1(NAC)/col-VND1-DAP-Seq(GSE60143)/Homer	CTTRWDNHWYAAGYW	1e0	-7.807e-01	0.9241	559.0	4.60%	1682.4	4.58%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-7.800e-01	0.9241	556.0	4.58%	1673.4	4.56%
BIM1(bHLH)/colamp-BIM1-DAP-Seq(GSE60143)/Homer	NNNNNNVTCACGTGM	1e0	-7.678e-01	0.9301	129.0	1.06%	386.1	1.05%
At4g38000(C2C2dof)/col-At4g38000-DAP-Seq(GSE60143)/Homer	WWWTWACTTTTT	1e0	-7.581e-01	0.9371	920.0	7.57%	2774.7	7.55%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-7.348e-01	0.9572	167.0	1.37%	502.6	1.37%
WRKY7(WRKY)/colamp-WRKY7-DAP-Seq(GSE60143)/Homer	AAAAGTCAACGSHWD	1e0	-7.259e-01	0.9636	1.0	0.01%	2.3	0.01%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-7.214e-01	0.9659	135.0	1.11%	406.2	1.11%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-7.203e-01	0.9659	421.0	3.47%	1270.9	3.46%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-7.187e-01	0.9659	179.0	1.47%	539.5	1.47%
At1g13300(G2like)/col-At1g13300-DAP-Seq(GSE60143)/Homer	GAATCTWAGATTCYN	1e0	-7.077e-01	0.9729	4.0	0.03%	11.1	0.03%
AT5G02460(C2C2dof)/col-AT5G02460-DAP-Seq(GSE60143)/Homer	CHCCTTTT	1e0	-7.049e-01	0.9735	1833.0	15.09%	5540.2	15.08%
IDD4(C2H2)/col-IDD4-DAP-Seq(GSE60143)/Homer	TTTGTCTTTWTB	1e0	-7.010e-01	0.9752	617.0	5.08%	1864.6	5.08%
ATHB13(Homeobox)/col-ATHB13-DAP-Seq(GSE60143)/Homer	CAATAATT	1e0	-6.805e-01	0.9933	824.0	6.78%	2493.0	6.79%
VND2(NAC)/col-VND2-DAP-Seq(GSE60143)/Homer	DNCKTNNNNNNNAAG	1e0	-6.694e-01	1.0000	659.0	5.42%	1994.6	5.43%
IDD7(C2H2)/col-IDD7-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTN	1e0	-6.647e-01	1.0000	262.0	2.16%	793.6	2.16%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-6.566e-01	1.0000	107.0	0.88%	324.2	0.88%
AT1G20910(ARID)/col-AT1G20910-DAP-Seq(GSE60143)/Homer	THAATTRAWN	1e0	-6.548e-01	1.0000	1297.0	10.68%	3926.4	10.69%
bZIP28(bZIP)/col-bZIP28-DAP-Seq(GSE60143)/Homer	TGCCACGTSABH	1e0	-6.524e-01	1.0000	270.0	2.22%	818.5	2.23%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-6.513e-01	1.0000	1552.0	12.78%	4698.9	12.79%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-6.431e-01	1.0000	62.0	0.51%	188.4	0.51%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-6.355e-01	1.0000	2315.0	19.06%	7009.5	19.08%
AREB3(bZIP)/col-AREB3-DAP-Seq(GSE60143)/Homer	NKGMCACGTGDCMNN	1e0	-6.307e-01	1.0000	289.0	2.38%	877.0	2.39%
VIP1(bZIP)/col-VIP1-DAP-Seq(GSE60143)/Homer	NTTGACAGCTGTCAN	1e0	-6.278e-01	1.0000	189.0	1.56%	575.0	1.57%
HSF21(HSF)/col-HSF21-DAP-Seq(GSE60143)/Homer	CTTCTAGAAGMTTYW	1e0	-6.231e-01	1.0000	47.0	0.39%	143.2	0.39%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-6.177e-01	1.0000	933.0	7.68%	2829.1	7.70%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e0	-6.177e-01	1.0000	688.0	5.66%	2087.4	5.68%
At1g76110(ARID)/colamp-At1g76110-DAP-Seq(GSE60143)/Homer	ATTTAATG	1e0	-6.067e-01	1.0000	583.0	4.80%	1770.3	4.82%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e0	-6.063e-01	1.0000	58.0	0.48%	177.7	0.48%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e0	-6.045e-01	1.0000	3064.0	25.22%	9282.0	25.27%
WRKY30(WRKY)/colamp-WRKY30-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e0	-6.040e-01	1.0000	127.0	1.05%	387.9	1.06%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e0	-6.016e-01	1.0000	900.0	7.41%	2731.7	7.44%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-5.926e-01	1.0000	189.0	1.56%	576.6	1.57%
dof45(C2C2dof)/col-dof45-DAP-Seq(GSE60143)/Homer	NVAWAAAGTN	1e0	-5.915e-01	1.0000	2320.0	19.10%	7032.0	19.14%
NST1(NAC)/colamp-NST1-DAP-Seq(GSE60143)/Homer	WRCTTRWWNWWYAAG	1e0	-5.883e-01	1.0000	620.0	5.10%	1884.5	5.13%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-5.870e-01	1.0000	344.0	2.83%	1047.3	2.85%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-5.780e-01	1.0000	297.0	2.44%	905.1	2.46%
M1BP(Zf)/S2R+-M1BP-ChIP-Seq(GSE49842)/Homer	CAGTGTGACCGT	1e0	-5.735e-01	1.0000	186.0	1.53%	568.7	1.55%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-5.595e-01	1.0000	3.0	0.02%	9.9	0.03%
WRKY11(WRKY)/col-WRKY11-DAP-Seq(GSE60143)/Homer	SCGTTGACTTTN	1e0	-5.591e-01	1.0000	49.0	0.40%	151.6	0.41%
ABF1(bZIP)/Arabidopsis-ABF1-ChIP-Seq(GSE80564)/Homer	CACGTGGC	1e0	-5.455e-01	1.0000	1148.0	9.45%	3490.5	9.50%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e0	-5.453e-01	1.0000	74.0	0.61%	228.9	0.62%
TCP17(TCP)/col-TCP17-DAP-Seq(GSE60143)/Homer	GTGGTCCCCA	1e0	-5.409e-01	1.0000	28.0	0.23%	87.2	0.24%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-5.371e-01	1.0000	161.0	1.33%	494.7	1.35%
ATHB5(HB)/colamp-ATHB5-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-5.352e-01	1.0000	629.0	5.18%	1917.6	5.22%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-5.285e-01	1.0000	399.0	3.28%	1219.5	3.32%
WRKY42(WRKY)/colamp-WRKY42-DAP-Seq(GSE60143)/Homer	NAAAGTCAACGN	1e0	-5.283e-01	1.0000	151.0	1.24%	464.3	1.26%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-5.271e-01	1.0000	63.0	0.52%	195.6	0.53%
AT3G51470(DBP)/col-AT3G51470-DAP-Seq(GSE60143)/Homer	TTWHGGTGCACC	1e0	-5.258e-01	1.0000	1465.0	12.06%	4454.4	12.13%
At5g66730(C2H2)/colamp-At5g66730-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTK	1e0	-5.137e-01	1.0000	173.0	1.42%	532.3	1.45%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-5.121e-01	1.0000	252.0	2.07%	773.7	2.11%
AT5G60130(ABI3VP1)/col-AT5G60130-DAP-Seq(GSE60143)/Homer	WTTYTAAGVAAA	1e0	-5.061e-01	1.0000	1644.0	13.53%	5000.0	13.61%
DAG2(C2C2dof)/col-DAG2-DAP-Seq(GSE60143)/Homer	WWTTHACTTTTT	1e0	-5.022e-01	1.0000	1435.0	11.81%	4367.6	11.89%
TBP3(MYBrelated)/col-TBP3-DAP-Seq(GSE60143)/Homer	VYTAGGGCAN	1e0	-4.968e-01	1.0000	447.0	3.68%	1368.9	3.73%
AT2G01818(PLATZ)/col-AT2G01818-DAP-Seq(GSE60143)/Homer	TCTAGAABSTTC	1e0	-4.958e-01	1.0000	74.0	0.61%	230.6	0.63%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e0	-4.877e-01	1.0000	255.0	2.10%	784.6	2.14%
ANAC057(NAC)/colamp-ANAC057-DAP-Seq(GSE60143)/Homer	DVCKTGNNNNNCAMG	1e0	-4.835e-01	1.0000	532.0	4.38%	1628.4	4.43%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-4.754e-01	1.0000	89.0	0.73%	277.0	0.75%
PTF1(TCP)/colamp-PTF1-DAP-Seq(GSE60143)/Homer	RDDGGGACCACA	1e0	-4.750e-01	1.0000	63.0	0.52%	197.4	0.54%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-4.687e-01	1.0000	60.0	0.49%	188.9	0.51%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-4.683e-01	1.0000	98.0	0.81%	305.6	0.83%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e0	-4.611e-01	1.0000	46.0	0.38%	145.7	0.40%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-4.569e-01	1.0000	66.0	0.54%	207.1	0.56%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-4.562e-01	1.0000	1876.0	15.44%	5713.6	15.55%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-4.477e-01	1.0000	234.0	1.93%	723.1	1.97%
ATHB7(Homeobox)/col-ATHB7-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-4.468e-01	1.0000	422.0	3.47%	1297.9	3.53%
HSF6(HSF)/col-HSF6-DAP-Seq(GSE60143)/Homer	TTYTAGAAGCTTCTA	1e0	-4.462e-01	1.0000	123.0	1.01%	383.3	1.04%
LMI1(HB)/colamp-LMI1-DAP-Seq(GSE60143)/Homer	AATTATTG	1e0	-4.425e-01	1.0000	517.0	4.26%	1587.4	4.32%
At5g29000(G2like)/col-At5g29000-DAP-Seq(GSE60143)/Homer	RGAATATTCYHH	1e0	-4.394e-01	1.0000	160.0	1.32%	497.6	1.35%
GT1(Trihelix)/col-GT1-DAP-Seq(GSE60143)/Homer	TTAACCATGGTTAAD	1e0	-4.349e-01	1.0000	6.0	0.05%	20.7	0.06%
ATHB6(Homeobox)/col-ATHB6-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-4.336e-01	1.0000	832.0	6.85%	2547.7	6.94%
NGA4(ABI3VP1)/col-NGA4-DAP-Seq(GSE60143)/Homer	TKNTCAGGTG	1e0	-4.304e-01	1.0000	2830.0	23.30%	8611.9	23.44%
WRKY47(WRKY)/colamp-WRKY47-DAP-Seq(GSE60143)/Homer	WAAGTCAACGBT	1e0	-4.278e-01	1.0000	109.0	0.90%	341.1	0.93%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e0	-4.264e-01	1.0000	272.0	2.24%	841.5	2.29%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-4.247e-01	1.0000	1518.0	12.50%	4633.6	12.61%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-4.220e-01	1.0000	815.0	6.71%	2497.0	6.80%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e0	-4.204e-01	1.0000	297.0	2.44%	918.8	2.50%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-4.182e-01	1.0000	667.0	5.49%	2047.9	5.57%
CUC3(NAC)/col-CUC3-DAP-Seq(GSE60143)/Homer	TRCKTGWNNNACAMG	1e0	-4.176e-01	1.0000	227.0	1.87%	704.2	1.92%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-4.134e-01	1.0000	696.0	5.73%	2136.8	5.82%
STOP1(C2H2)/colamp-STOP1-DAP-Seq(GSE60143)/Homer	DTATCTGGKGRAGGT	1e0	-4.105e-01	1.0000	315.0	2.59%	974.1	2.65%
bZIP16(bZIP)/colamp-bZIP16-DAP-Seq(GSE60143)/Homer	TGCCACGTGD	1e0	-4.002e-01	1.0000	282.0	2.32%	874.1	2.38%
OBP4(C2C2dof)/col-OBP4-DAP-Seq(GSE60143)/Homer	WTTHACTTTTTB	1e0	-3.925e-01	1.0000	1175.0	9.67%	3598.0	9.79%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-3.875e-01	1.0000	1689.0	13.90%	5160.5	14.05%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-3.764e-01	1.0000	988.0	8.13%	3031.1	8.25%
CUC2(NAC)/colamp-CUC2-DAP-Seq(GSE60143)/Homer	TRCKTGTNNNWCAMG	1e0	-3.734e-01	1.0000	216.0	1.78%	674.8	1.84%
ATHB21(HB)/colamp-ATHB21-DAP-Seq(GSE60143)/Homer	YCAATWAT	1e0	-3.733e-01	1.0000	288.0	2.37%	895.8	2.44%
ATHB18(Homeobox)/colamp-ATHB18-DAP-Seq(GSE60143)/Homer	YCAATSATTG	1e0	-3.713e-01	1.0000	105.0	0.86%	332.3	0.90%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-3.658e-01	1.0000	13.0	0.11%	44.3	0.12%
AT2G31460(REMB3)/col-AT2G31460-DAP-Seq(GSE60143)/Homer	WNWARWDGAAATGAT	1e0	-3.612e-01	1.0000	270.0	2.22%	841.9	2.29%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e0	-3.608e-01	1.0000	780.0	6.42%	2400.8	6.54%
ANAC087(NAC)/col-ANAC087-DAP-Seq(GSE60143)/Homer	WVCKTGHNNNWCAMG	1e0	-3.587e-01	1.0000	199.0	1.64%	623.0	1.70%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-3.587e-01	1.0000	128.0	1.05%	404.6	1.10%
AT3G42860(zfGRF)/col-AT3G42860-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e0	-3.567e-01	1.0000	116.0	0.95%	367.4	1.00%
bZIP68(bZIP)/col-bZIP68-DAP-Seq(GSE60143)/Homer	WGCCACGTGK	1e0	-3.506e-01	1.0000	342.0	2.82%	1063.9	2.90%
At3g12730(G2like)/colamp-At3g12730-DAP-Seq(GSE60143)/Homer	AAGATTCT	1e0	-3.494e-01	1.0000	1011.0	8.32%	3106.6	8.46%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-3.386e-01	1.0000	351.0	2.89%	1092.8	2.97%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-3.316e-01	1.0000	194.0	1.60%	610.7	1.66%
 Ik-1	NHTTGGGAATRCC	1e0	-3.307e-01	1.0000	12148.0	100.00%	36735.3	100.00%
ANAC020(NAC)/col-ANAC020-DAP-Seq(GSE60143)/Homer	DVCKTGHNNNDCAAG	1e0	-3.206e-01	1.0000	422.0	3.47%	1312.3	3.57%
HAT2(Homeobox)/colamp-HAT2-DAP-Seq(GSE60143)/Homer	CYAATSATTR	1e0	-3.160e-01	1.0000	522.0	4.30%	1619.6	4.41%
HSF7(HSF)/colamp-HSF7-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-3.155e-01	1.0000	99.0	0.81%	317.8	0.87%
HSFA1E(HSF)/col-HSFA1E-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-3.141e-01	1.0000	40.0	0.33%	132.1	0.36%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-3.110e-01	1.0000	305.0	2.51%	954.9	2.60%
ATHB6(Homeobox)/Arabidopsis-HB6-ChIP-Seq(GSE80564)/Homer	CAATNATTBN	1e0	-3.076e-01	1.0000	486.0	4.00%	1510.9	4.11%
MYB10(MYB)/col-MYB10-DAP-Seq(GSE60143)/Homer	YCCACCTACCHH	1e0	-3.075e-01	1.0000	249.0	2.05%	782.1	2.13%
GATA19(C2C2gata)/colamp-GATA19-DAP-Seq(GSE60143)/Homer	ATCSGATCVG	1e0	-3.070e-01	1.0000	44.0	0.36%	145.3	0.40%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-2.994e-01	1.0000	133.0	1.09%	424.4	1.16%
SND2(NAC)/colamp-SND2-DAP-Seq(GSE60143)/Homer	CTTVWNNNWBAAGNW	1e0	-2.957e-01	1.0000	401.0	3.30%	1251.3	3.41%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-2.935e-01	1.0000	1227.0	10.10%	3776.4	10.28%
AT4G00250(GeBP)/col-AT4G00250-DAP-Seq(GSE60143)/Homer	WDTGGATAAKRT	1e0	-2.913e-01	1.0000	365.0	3.00%	1141.5	3.11%
AT1G49560(G2like)/colamp-AT1G49560-DAP-Seq(GSE60143)/Homer	GAWTCTNWDA	1e0	-2.908e-01	1.0000	789.0	6.49%	2440.6	6.64%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-2.783e-01	1.0000	53.0	0.44%	175.3	0.48%
At1g19000(MYBrelated)/colamp-At1g19000-DAP-Seq(GSE60143)/Homer	WWTGGATAADDT	1e0	-2.782e-01	1.0000	537.0	4.42%	1671.7	4.55%
DEL1(E2FDP)/colamp-DEL1-DAP-Seq(GSE60143)/Homer	TTCCCGCCAA	1e0	-2.780e-01	1.0000	3.0	0.02%	12.3	0.03%
SND3(NAC)/col-SND3-DAP-Seq(GSE60143)/Homer	CTTNHNNNDNAAGNH	1e0	-2.780e-01	1.0000	492.0	4.05%	1533.2	4.17%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-2.722e-01	1.0000	846.0	6.96%	2618.1	7.13%
VND3(NAC)/colamp-VND3-DAP-Seq(GSE60143)/Homer	TRCTTGWDNHWCAAG	1e0	-2.629e-01	1.0000	457.0	3.76%	1428.7	3.89%
WIP5(C2H2)/colamp-WIP5-DAP-Seq(GSE60143)/Homer	TDTTCTCMAGGT	1e0	-2.628e-01	1.0000	916.0	7.54%	2834.3	7.72%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-2.627e-01	1.0000	48.0	0.40%	160.3	0.44%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	-2.613e-01	1.0000	6.0	0.05%	23.7	0.06%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-2.542e-01	1.0000	1960.0	16.13%	6019.1	16.39%
AT2G20400(G2like)/colamp-AT2G20400-DAP-Seq(GSE60143)/Homer	DNVGAATATTCBNHN	1e0	-2.509e-01	1.0000	73.0	0.60%	240.2	0.65%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-2.508e-01	1.0000	202.0	1.66%	643.9	1.75%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-2.489e-01	1.0000	163.0	1.34%	522.8	1.42%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-2.487e-01	1.0000	39.0	0.32%	132.2	0.36%
ATHB34(ZFHD)/colamp-ATHB34-DAP-Seq(GSE60143)/Homer	TRATTARS	1e0	-2.416e-01	1.0000	660.0	5.43%	2055.7	5.60%
ABF2(bZIP)/col-ABF2-DAP-Seq(GSE60143)/Homer	KGMCACGTGDCMHHH	1e0	-2.405e-01	1.0000	200.0	1.65%	638.9	1.74%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-2.382e-01	1.0000	41.0	0.34%	139.7	0.38%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-2.380e-01	1.0000	129.0	1.06%	417.9	1.14%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-2.343e-01	1.0000	372.0	3.06%	1171.2	3.19%
SeqBias: CA-repeat	CACACACACA	1e0	-2.336e-01	1.0000	5084.0	41.85%	15506.9	42.21%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-2.309e-01	1.0000	147.0	1.21%	474.7	1.29%
bZIP53(bZIP)/colamp-bZIP53-DAP-Seq(GSE60143)/Homer	NDNHSACGTGKMNNN	1e0	-2.296e-01	1.0000	296.0	2.44%	937.2	2.55%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-2.274e-01	1.0000	1807.0	14.87%	5562.7	15.14%
TCP3(TCP)/colamp-TCP3-DAP-Seq(GSE60143)/Homer	WGTGGTCCCAAHWWW	1e0	-2.271e-01	1.0000	136.0	1.12%	440.1	1.20%
ATHB53(HB)/col-ATHB53-DAP-Seq(GSE60143)/Homer	CAATAATT	1e0	-2.222e-01	1.0000	338.0	2.78%	1068.3	2.91%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-2.221e-01	1.0000	746.0	6.14%	2323.2	6.32%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-2.146e-01	1.0000	181.0	1.49%	582.9	1.59%
VRN1(ABI3VP1)/col-VRN1-DAP-Seq(GSE60143)/Homer	TTTTTTTTTT	1e0	-2.124e-01	1.0000	1.0	0.01%	5.1	0.01%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-2.120e-01	1.0000	79.0	0.65%	262.7	0.72%
AT2G28920(ND)/col-AT2G28920-DAP-Seq(GSE60143)/Homer	WAGATATTTWTW	1e0	-2.104e-01	1.0000	185.0	1.52%	595.2	1.62%
HSFC1(HSF)/col-HSFC1-DAP-Seq(GSE60143)/Homer	HTTCTAGAADCTTCT	1e0	-2.091e-01	1.0000	102.0	0.84%	335.0	0.91%
FRS9(ND)/col-FRS9-DAP-Seq(GSE60143)/Homer	RGAGAGAGAAAG	1e0	-2.087e-01	1.0000	159.0	1.31%	514.9	1.40%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-2.036e-01	1.0000	105.0	0.86%	345.5	0.94%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-2.006e-01	1.0000	262.0	2.16%	836.2	2.28%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-1.928e-01	1.0000	1504.0	12.38%	4650.9	12.66%
ATHB40(HB)/col-ATHB40-DAP-Seq(GSE60143)/Homer	HCAATWATTG	1e0	-1.926e-01	1.0000	530.0	4.36%	1666.2	4.54%
AGL15(MADS)/col-AGL15-DAP-Seq(GSE60143)/Homer	TTTCCHWATWDGGAA	1e0	-1.925e-01	1.0000	98.0	0.81%	324.1	0.88%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.908e-01	1.0000	213.0	1.75%	685.3	1.87%
ANAC092(NAC)/colamp-ANAC092-DAP-Seq(GSE60143)/Homer	WRCKTGWNNNWCAMG	1e0	-1.867e-01	1.0000	269.0	2.21%	860.5	2.34%
RAV1(RAV)/colamp-RAV1-DAP-Seq(GSE60143)/Homer	TWWTTTCTGTTG	1e0	-1.862e-01	1.0000	549.0	4.52%	1726.7	4.70%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-1.838e-01	1.0000	6.0	0.05%	25.5	0.07%
PLT1(AP2EREBP)/colamp-PLT1-DAP-Seq(GSE60143)/Homer	GCACGAWTYCCGAGG	1e0	-1.823e-01	1.0000	47.0	0.39%	162.8	0.44%
ATHB23(ZFHD)/col-ATHB23-DAP-Seq(GSE60143)/Homer	HTAATTARNN	1e0	-1.798e-01	1.0000	750.0	6.17%	2346.2	6.39%
HDG7(HB)/col-HDG7-DAP-Seq(GSE60143)/Homer	WGCATTTAATGC	1e0	-1.795e-01	1.0000	147.0	1.21%	480.7	1.31%
AT3G58630(Trihelix)/col-AT3G58630-DAP-Seq(GSE60143)/Homer	TCTCCGGCGA	1e0	-1.712e-01	1.0000	272.0	2.24%	872.5	2.38%
TSO1(CPP)/col-TSO1-DAP-Seq(GSE60143)/Homer	RAATTTRAAW	1e0	-1.710e-01	1.0000	75.0	0.62%	253.0	0.69%
WRKY33(WRKY)/col-WRKY33-DAP-Seq(GSE60143)/Homer	CGTTGACYAW	1e0	-1.666e-01	1.0000	367.0	3.02%	1168.7	3.18%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-1.621e-01	1.0000	482.0	3.97%	1525.6	4.15%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.620e-01	1.0000	2190.0	18.03%	6755.4	18.39%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-1.601e-01	1.0000	263.0	2.16%	846.3	2.30%
At2g03500(G2like)/col-At2g03500-DAP-Seq(GSE60143)/Homer	WWAGAATATTCT	1e0	-1.587e-01	1.0000	129.0	1.06%	426.5	1.16%
bZIP52(bZIP)/colamp-bZIP52-DAP-Seq(GSE60143)/Homer	NDNHCAGCTGTCANN	1e0	-1.514e-01	1.0000	1433.0	11.80%	4449.1	12.11%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-1.499e-01	1.0000	166.0	1.37%	544.5	1.48%
AT5G45580(G2like)/colamp-AT5G45580-DAP-Seq(GSE60143)/Homer	ADRGAATCTH	1e0	-1.462e-01	1.0000	1096.0	9.02%	3419.6	9.31%
At3g24120(G2like)/col-At3g24120-DAP-Seq(GSE60143)/Homer	NWWAGMATMW	1e0	-1.440e-01	1.0000	2802.0	23.07%	8628.6	23.49%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-1.342e-01	1.0000	94.0	0.77%	318.6	0.87%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e0	-1.322e-01	1.0000	815.0	6.71%	2561.9	6.97%
MYB83(MYB)/colamp-MYB83-DAP-Seq(GSE60143)/Homer	CACCAACCWH	1e0	-1.302e-01	1.0000	1378.0	11.34%	4290.2	11.68%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e0	-1.272e-01	1.0000	281.0	2.31%	909.6	2.48%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e0	-1.262e-01	1.0000	51.0	0.42%	180.9	0.49%
MYB39(MYB)/col-MYB39-DAP-Seq(GSE60143)/Homer	WWAARKTAGGTGRAA	1e0	-1.235e-01	1.0000	78.0	0.64%	268.7	0.73%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e0	-1.233e-01	1.0000	1118.0	9.20%	3496.8	9.52%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-1.221e-01	1.0000	7.0	0.06%	31.2	0.08%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.221e-01	1.0000	473.0	3.89%	1508.3	4.11%
ANL2(HB)/col-ANL2-DAP-Seq(GSE60143)/Homer	CATTAATTGC	1e0	-1.189e-01	1.0000	473.0	3.89%	1509.9	4.11%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-1.167e-01	1.0000	44.0	0.36%	158.4	0.43%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e0	-1.111e-01	1.0000	204.0	1.68%	671.4	1.83%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.111e-01	1.0000	252.0	2.07%	822.2	2.24%
AT1G04880(ARID)/colamp-AT1G04880-DAP-Seq(GSE60143)/Homer	AAACTATATADTATA	1e0	-1.097e-01	1.0000	55.0	0.45%	195.5	0.53%
PLT3(AP2EREBP)/col-PLT3-DAP-Seq(GSE60143)/Homer	GCACGNWTHYCGAGG	1e0	-1.080e-01	1.0000	35.0	0.29%	129.1	0.35%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-1.071e-01	1.0000	429.0	3.53%	1376.3	3.75%
ATHB25(ZFHD)/colamp-ATHB25-DAP-Seq(GSE60143)/Homer	TAATTAVB	1e0	-1.071e-01	1.0000	913.0	7.52%	2873.6	7.82%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.066e-01	1.0000	217.0	1.79%	713.7	1.94%
dof42(C2C2dof)/col-dof42-DAP-Seq(GSE60143)/Homer	AAAAAGGC	1e0	-1.063e-01	1.0000	491.0	4.04%	1569.5	4.27%
ANAC016(NAC)/col-ANAC016-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAMG	1e0	-1.055e-01	1.0000	597.0	4.91%	1898.4	5.17%
EPR1(MYBrelated)/colamp-EPR1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-1.037e-01	1.0000	260.0	2.14%	849.1	2.31%
LHY1(MYBrelated)/col-LHY1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-1.037e-01	1.0000	260.0	2.14%	849.1	2.31%
AT3G10113(MYBrelated)/col-AT3G10113-DAP-Seq(GSE60143)/Homer	WNAAATATCWWN	1e0	-1.024e-01	1.0000	309.0	2.54%	1003.4	2.73%
RVE1(MYBrelated)/col-RVE1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-1.022e-01	1.0000	389.0	3.20%	1253.7	3.41%
AGL95(ND)/col-AGL95-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-1.017e-01	1.0000	45.0	0.37%	163.1	0.44%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e0	-1.002e-01	1.0000	233.0	1.92%	765.7	2.08%
O2(bZIP)/Corn-O2-ChIP-Seq(GSE63991)/Homer	GCTGACGTGGCA	1e0	-9.767e-02	1.0000	173.0	1.42%	576.1	1.57%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-9.728e-02	1.0000	615.0	5.06%	1957.9	5.33%
bHLH74(bHLH)/col-bHLH74-DAP-Seq(GSE60143)/Homer	DRATCACGTGAB	1e0	-9.292e-02	1.0000	364.0	3.00%	1178.8	3.21%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e0	-9.288e-02	1.0000	2149.0	17.69%	6670.5	18.16%
At1g69690(TCP)/colamp-At1g69690-DAP-Seq(GSE60143)/Homer	NHGTGGGGCCCACHW	1e0	-8.861e-02	1.0000	140.0	1.15%	473.1	1.29%
AT2G33550(Trihelix)/colamp-AT2G33550-DAP-Seq(GSE60143)/Homer	TTTAAGGGCAYTTTT	1e0	-8.766e-02	1.0000	1569.0	12.92%	4899.8	13.34%
AGL13(MADS)/col-AGL13-DAP-Seq(GSE60143)/Homer	TWCCAWWTWTGGWAA	1e0	-8.540e-02	1.0000	24.0	0.20%	94.4	0.26%
At2g45680(TCP)/colamp-At2g45680-DAP-Seq(GSE60143)/Homer	GTGGGNCCCACNDND	1e0	-8.529e-02	1.0000	31.0	0.26%	118.0	0.32%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-8.511e-02	1.0000	136.0	1.12%	461.4	1.26%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-7.646e-02	1.0000	24.0	0.20%	95.9	0.26%
bHLH18(bHLH)/col-bHLH18-DAP-Seq(GSE60143)/Homer	CACGTGTTYCACGTG	1e0	-7.500e-02	1.0000	16.0	0.13%	67.3	0.18%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e0	-7.443e-02	1.0000	1151.0	9.47%	3624.9	9.87%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-7.319e-02	1.0000	11.0	0.09%	49.9	0.14%
WRKY75(WRKY)/col-WRKY75-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e0	-7.288e-02	1.0000	446.0	3.67%	1442.9	3.93%
At4g01280(MYBrelated)/colamp-At4g01280-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-7.232e-02	1.0000	389.0	3.20%	1264.4	3.44%
GBF6(bZIP)/colamp-GBF6-DAP-Seq(GSE60143)/Homer	WWTGMCACGTCABCW	1e0	-7.161e-02	1.0000	169.0	1.39%	570.5	1.55%
SGR5(C2H2)/colamp-SGR5-DAP-Seq(GSE60143)/Homer	TTTGTCTTTTTT	1e0	-7.141e-02	1.0000	465.0	3.83%	1502.7	4.09%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-7.057e-02	1.0000	259.0	2.13%	856.1	2.33%
HAT5(Homeobox)/colamp-HAT5-DAP-Seq(GSE60143)/Homer	DCAATWATTG	1e0	-6.994e-02	1.0000	90.0	0.74%	316.8	0.86%
WRKY40(WRKY)/colamp-WRKY40-DAP-Seq(GSE60143)/Homer	AHWAGTCAAC	1e0	-6.893e-02	1.0000	243.0	2.00%	806.1	2.19%
AT3G09735(S1Falike)/col-AT3G09735-DAP-Seq(GSE60143)/Homer	TTCTAGAANMTTCTA	1e0	-6.762e-02	1.0000	211.0	1.74%	705.2	1.92%
At2g01060(G2like)/colamp-At2g01060-DAP-Seq(GSE60143)/Homer	AGATKCBNWW	1e0	-6.363e-02	1.0000	2524.0	20.78%	7841.2	21.34%
SVP(MADS)/col-SVP-DAP-Seq(GSE60143)/Homer	ANTTWCCHAATTTGG	1e0	-6.310e-02	1.0000	311.0	2.56%	1023.2	2.79%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-6.221e-02	1.0000	392.0	3.23%	1278.1	3.48%
PIF7(bHLH)/col-PIF7-DAP-Seq(GSE60143)/Homer	CCACGTGGNH	1e0	-6.176e-02	1.0000	269.0	2.21%	891.4	2.43%
AS2(LOBAS2)/col-AS2-DAP-Seq(GSE60143)/Homer	CCGDAAWWHMCGSCG	1e0	-6.143e-02	1.0000	250.0	2.06%	831.3	2.26%
CRC(C2C2YABBY)/col-CRC-DAP-Seq(GSE60143)/Homer	TWATSATA	1e0	-6.132e-02	1.0000	769.0	6.33%	2453.9	6.68%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-5.989e-02	1.0000	229.0	1.89%	765.3	2.08%
NTM1(NAC)/col-NTM1-DAP-Seq(GSE60143)/Homer	ACTTRTARAASAAGT	1e0	-5.727e-02	1.0000	307.0	2.53%	1013.5	2.76%
bHLH130(bHLH)/col-bHLH130-DAP-Seq(GSE60143)/Homer	GCAACTTG	1e0	-5.508e-02	1.0000	431.0	3.55%	1404.9	3.82%
MYB27(MYB)/colamp-MYB27-DAP-Seq(GSE60143)/Homer	TACCTAACWT	1e0	-5.498e-02	1.0000	91.0	0.75%	323.4	0.88%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-5.309e-02	1.0000	1835.0	15.11%	5744.6	15.64%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-5.290e-02	1.0000	631.0	5.19%	2030.8	5.53%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-5.257e-02	1.0000	371.0	3.05%	1217.3	3.31%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-4.949e-02	1.0000	2358.0	19.41%	7350.2	20.01%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-4.913e-02	1.0000	392.0	3.23%	1285.1	3.50%
BPC6(BBRBPC)/col-BPC6-DAP-Seq(GSE60143)/Homer	YTYTCTCTCTCTCTA	1e0	-4.904e-02	1.0000	8.0	0.07%	40.3	0.11%
REM19(REM)/colamp-REM19-DAP-Seq(GSE60143)/Homer	AAAAAAAA	1e0	-4.877e-02	1.0000	189.0	1.56%	642.1	1.75%
dHNF4(NR)/Fly-HNF4-ChIP-Seq(GSE73675)/Homer	GGTCCAAAGTCCAMT	1e0	-4.757e-02	1.0000	14.0	0.12%	63.3	0.17%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-4.601e-02	1.0000	273.0	2.25%	911.4	2.48%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-4.601e-02	1.0000	134.0	1.10%	466.2	1.27%
At3g09600(MYBrelated)/colamp-At3g09600-DAP-Seq(GSE60143)/Homer	AAAATATCTT	1e0	-4.407e-02	1.0000	296.0	2.44%	985.3	2.68%
HAP3(CCAATHAP3)/col-HAP3-DAP-Seq(GSE60143)/Homer	TGATGGAW	1e0	-4.342e-02	1.0000	243.0	2.00%	817.8	2.23%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-4.289e-02	1.0000	704.0	5.80%	2265.3	6.17%
WRKY20(WRKY)/col-WRKY20-DAP-Seq(GSE60143)/Homer	CKTTGACYWD	1e0	-4.267e-02	1.0000	346.0	2.85%	1144.7	3.12%
At1g74840(MYBrelated)/col100-At1g74840-DAP-Seq(GSE60143)/Homer	YHTTATCCAWWT	1e0	-4.206e-02	1.0000	451.0	3.71%	1475.2	4.02%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-4.191e-02	1.0000	52.0	0.43%	197.9	0.54%
MYB94(MYB)/col-MYB94-DAP-Seq(GSE60143)/Homer	WGGTRGTTGGKA	1e0	-4.190e-02	1.0000	223.0	1.84%	754.7	2.05%
WRKY21(WRKY)/colamp-WRKY21-DAP-Seq(GSE60143)/Homer	DCGTTGACTTTT	1e0	-4.043e-02	1.0000	39.0	0.32%	153.4	0.42%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-3.985e-02	1.0000	672.0	5.53%	2168.5	5.90%
AT4G37180(G2like)/col-AT4G37180-DAP-Seq(GSE60143)/Homer	AGAATCTTNN	1e0	-3.948e-02	1.0000	721.0	5.94%	2321.6	6.32%
At1g25550(G2like)/colamp-At1g25550-DAP-Seq(GSE60143)/Homer	NAGATTCY	1e0	-3.845e-02	1.0000	628.0	5.17%	2032.7	5.53%
WRKY43(WRKY)/colamp-WRKY43-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTT	1e0	-3.820e-02	1.0000	137.0	1.13%	479.2	1.30%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-3.604e-02	1.0000	207.0	1.70%	706.7	1.92%
AGL63(MADS)/col-AGL63-DAP-Seq(GSE60143)/Homer	TTCCAAWWWTGG	1e0	-3.539e-02	1.0000	551.0	4.54%	1794.3	4.88%
GBF5(bZIP)/colamp-GBF5-DAP-Seq(GSE60143)/Homer	WKNWSACGTGGCAWN	1e0	-3.517e-02	1.0000	234.0	1.93%	793.5	2.16%
bZIP48(bZIP)/colamp-bZIP48-DAP-Seq(GSE60143)/Homer	DDWWKVTSACGTGGC	1e0	-3.405e-02	1.0000	256.0	2.11%	864.0	2.35%
Replumless(BLH)/Arabidopsis-RPL.GFP-ChIP-Seq(GSE78727)/Homer	HGTCWHATCA	1e0	-3.356e-02	1.0000	756.0	6.22%	2436.1	6.63%
WRKY15(WRKY)/col-WRKY15-DAP-Seq(GSE60143)/Homer	VGTTGACTWW	1e0	-3.341e-02	1.0000	452.0	3.72%	1486.0	4.05%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-3.332e-02	1.0000	544.0	4.48%	1774.5	4.83%
ANAC028(NAC)/col-ANAC028-DAP-Seq(GSE60143)/Homer	WRCTTGNNNNNCAAG	1e0	-3.280e-02	1.0000	462.0	3.80%	1517.2	4.13%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-3.279e-02	1.0000	2504.0	20.61%	7822.6	21.29%
FAR1(FAR1)/col-FAR1-DAP-Seq(GSE60143)/Homer	TKNNNYYCACGCGCY	1e0	-3.265e-02	1.0000	226.0	1.86%	769.4	2.09%
WRKY17(WRKY)/colamp-WRKY17-DAP-Seq(GSE60143)/Homer	GCGTTGACTTTT	1e0	-3.217e-02	1.0000	2.0	0.02%	16.6	0.05%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-3.136e-02	1.0000	1092.0	8.99%	3482.3	9.48%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-3.134e-02	1.0000	110.0	0.91%	394.6	1.07%
WRKY3(WRKY)/col-WRKY3-DAP-Seq(GSE60143)/Homer	NCKTTGACYDDN	1e0	-3.059e-02	1.0000	280.0	2.30%	943.8	2.57%
At5g22890(C2H2)/col-At5g22890-DAP-Seq(GSE60143)/Homer	NSAGGTKWTATCTGD	1e0	-2.942e-02	1.0000	15.0	0.12%	70.7	0.19%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-2.883e-02	1.0000	316.0	2.60%	1059.1	2.88%
WRKY65(WRKY)/colamp-WRKY65-DAP-Seq(GSE60143)/Homer	AWWWAGTCAACG	1e0	-2.864e-02	1.0000	186.0	1.53%	643.2	1.75%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e0	-2.707e-02	1.0000	116.0	0.95%	416.6	1.13%
EIN3(EIL)/col-EIN3-DAP-Seq(GSE60143)/Homer	ARATTCAATGWATYT	1e0	-2.690e-02	1.0000	78.0	0.64%	290.4	0.79%
HSFA6B(HSF)/colamp-HSFA6B-DAP-Seq(GSE60143)/Homer	NTTCTAGAANHTTCT	1e0	-2.671e-02	1.0000	269.0	2.21%	911.2	2.48%
AT2G38300(G2like)/col-AT2G38300-DAP-Seq(GSE60143)/Homer	ADRGAATGTT	1e0	-2.659e-02	1.0000	928.0	7.64%	2980.5	8.11%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e0	-2.632e-02	1.0000	622.0	5.12%	2026.8	5.52%
bHLH34(bHLH)/colamp-bHLH34-DAP-Seq(GSE60143)/Homer	HGWGRHWGACACGTG	1e0	-2.530e-02	1.0000	299.0	2.46%	1008.5	2.75%
NTM2(NAC)/col-NTM2-DAP-Seq(GSE60143)/Homer	CTTRTNNNAYAAGBH	1e0	-2.481e-02	1.0000	329.0	2.71%	1104.7	3.01%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e0	-2.462e-02	1.0000	255.0	2.10%	868.4	2.36%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-2.433e-02	1.0000	37.0	0.30%	151.7	0.41%
At3g04030(G2like)/col-At3g04030-DAP-Seq(GSE60143)/Homer	DRGAATCT	1e0	-2.393e-02	1.0000	549.0	4.52%	1800.4	4.90%
At5g52660(MYBrelated)/colamp-At5g52660-DAP-Seq(GSE60143)/Homer	HAAAAATATCTW	1e0	-2.374e-02	1.0000	281.0	2.31%	952.9	2.59%
ANAC053(NAC)/colamp-ANAC053-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e0	-2.371e-02	1.0000	323.0	2.66%	1086.8	2.96%
ANAC013(NAC)/col-ANAC013-DAP-Seq(GSE60143)/Homer	CTTGNNNNNCAAGNA	1e0	-2.334e-02	1.0000	269.0	2.21%	914.4	2.49%
bZIP3(bZIP)/col-bZIP3-DAP-Seq(GSE60143)/Homer	DWKNHSACGTGGCAD	1e0	-2.318e-02	1.0000	382.0	3.14%	1274.7	3.47%
At5g05790(MYBrelated)/col-At5g05790-DAP-Seq(GSE60143)/Homer	AYCTTATC	1e0	-2.292e-02	1.0000	575.0	4.73%	1883.7	5.13%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e0	-2.263e-02	1.0000	864.0	7.11%	2787.8	7.59%
GATA4(C2C2gata)/col-GATA4-DAP-Seq(GSE60143)/Homer	DDWTYAGATCTR	1e0	-2.190e-02	1.0000	497.0	4.09%	1639.1	4.46%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-2.098e-02	1.0000	945.0	7.78%	3042.3	8.28%
WRKY31(WRKY)/colamp-WRKY31-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWK	1e0	-2.094e-02	1.0000	292.0	2.40%	990.9	2.70%
ANAC103(NAC)/col-ANAC103-DAP-Seq(GSE60143)/Homer	AACTTGNWNWNCAAG	1e0	-2.080e-02	1.0000	220.0	1.81%	759.4	2.07%
AT1G19040(NAC)/col-AT1G19040-DAP-Seq(GSE60143)/Homer	CTTGNDNHNCAAGYW	1e0	-2.012e-02	1.0000	54.0	0.44%	213.0	0.58%
ANAC075(NAC)/col-ANAC075-DAP-Seq(GSE60143)/Homer	CTTSWWNWWSAAGYT	1e0	-1.947e-02	1.0000	210.0	1.73%	729.0	1.98%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-1.825e-02	1.0000	34.0	0.28%	143.8	0.39%
At3g11280(MYBrelated)/col-At3g11280-DAP-Seq(GSE60143)/Homer	GATAAGRT	1e0	-1.821e-02	1.0000	541.0	4.45%	1783.7	4.86%
At5g08520(MYBrelated)/colamp-At5g08520-DAP-Seq(GSE60143)/Homer	ADBSTTATCY	1e0	-1.793e-02	1.0000	701.0	5.77%	2286.4	6.22%
bHLH80(bHLH)/col-bHLH80-DAP-Seq(GSE60143)/Homer	NNNNDCAASTTGHNN	1e0	-1.703e-02	1.0000	568.0	4.68%	1870.8	5.09%
WRKY28(WRKY)/col-WRKY28-DAP-Seq(GSE60143)/Homer	BGTTGACTWH	1e0	-1.513e-02	1.0000	612.0	5.04%	2012.1	5.48%
ZML2(C2C2gata)/col-ZML2-DAP-Seq(GSE60143)/Homer	CATCATCATC	1e0	-1.505e-02	1.0000	123.0	1.01%	448.5	1.22%
TF3A(C2H2)/col-TF3A-DAP-Seq(GSE60143)/Homer	NNDDGAGGAGGWNNN	1e0	-1.494e-02	1.0000	1203.0	9.90%	3857.0	10.50%
ANAC058(NAC)/col-ANAC058-DAP-Seq(GSE60143)/Homer	TWCTTGTDNNACAAG	1e0	-1.458e-02	1.0000	352.0	2.90%	1190.4	3.24%
WRKY50(WRKY)/col-WRKY50-DAP-Seq(GSE60143)/Homer	NNTTGACTWNNGNNN	1e0	-1.457e-02	1.0000	452.0	3.72%	1508.6	4.11%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.449e-02	1.0000	53.0	0.44%	212.4	0.58%
ANAC096(NAC)/colamp-ANAC096-DAP-Seq(GSE60143)/Homer	TACTTGWNNNWCAAG	1e0	-1.372e-02	1.0000	420.0	3.46%	1408.1	3.83%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-1.352e-02	1.0000	79.0	0.65%	302.9	0.82%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.343e-02	1.0000	214.0	1.76%	748.9	2.04%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-1.311e-02	1.0000	532.0	4.38%	1764.9	4.80%
GATA6(C2C2gata)/col200-GATA6-DAP-Seq(GSE60143)/Homer	TAGATCTARAHH	1e0	-1.308e-02	1.0000	78.0	0.64%	299.7	0.82%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-1.284e-02	1.0000	332.0	2.73%	1129.0	3.07%
GATA1(C2C2gata)/colamp-GATA1-DAP-Seq(GSE60143)/Homer	DDWWYYAGATCTRRW	1e0	-1.263e-02	1.0000	234.0	1.93%	814.3	2.22%
NAC2(NAC)/colamp-NAC2-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e0	-1.242e-02	1.0000	434.0	3.57%	1455.7	3.96%
GATA15(C2C2gata)/col-GATA15-DAP-Seq(GSE60143)/Homer	KATGATCA	1e0	-1.224e-02	1.0000	889.0	7.32%	2887.5	7.86%
BPC1(BBRBPC)/colamp-BPC1-DAP-Seq(GSE60143)/Homer	GARGAGAGAGAA	1e0	-1.175e-02	1.0000	383.0	3.15%	1294.4	3.52%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-1.158e-02	1.0000	297.0	2.44%	1019.8	2.78%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-1.143e-02	1.0000	1088.0	8.96%	3510.0	9.55%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-1.126e-02	1.0000	313.0	2.58%	1071.1	2.92%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.112e-02	1.0000	147.0	1.21%	532.9	1.45%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.097e-02	1.0000	35.0	0.29%	151.3	0.41%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.054e-02	1.0000	417.0	3.43%	1405.2	3.83%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.004e-02	1.0000	64.0	0.53%	254.5	0.69%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e0	-9.834e-03	1.0000	839.0	6.91%	2738.9	7.46%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-9.828e-03	1.0000	295.0	2.43%	1016.8	2.77%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-9.703e-03	1.0000	89.0	0.73%	340.2	0.93%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-9.480e-03	1.0000	121.0	1.00%	448.7	1.22%
AT1G72740(MYBrelated)/colamp-AT1G72740-DAP-Seq(GSE60143)/Homer	NNWWAMCCTAAHWNN	1e0	-9.377e-03	1.0000	580.0	4.77%	1925.4	5.24%
WRKY6(WRKY)/colamp-WRKY6-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWD	1e0	-9.190e-03	1.0000	369.0	3.04%	1255.1	3.42%
WRKY25(WRKY)/colamp-WRKY25-DAP-Seq(GSE60143)/Homer	NNNNHRGTCAAMNNN	1e0	-9.126e-03	1.0000	509.0	4.19%	1701.0	4.63%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-9.023e-03	1.0000	213.0	1.75%	753.0	2.05%
CCA(Myb)/Arabidopsis-CCA.GFP-ChIP-Seq(GSE70533)/Homer	AGATATYTTT	1e0	-8.650e-03	1.0000	548.0	4.51%	1826.3	4.97%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e0	-8.593e-03	1.0000	615.0	5.06%	2038.5	5.55%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-8.332e-03	1.0000	1827.0	15.04%	5814.0	15.83%
WUS1(Homeobox)/colamp-WUS1-DAP-Seq(GSE60143)/Homer	CAWTCATTCA	1e0	-8.254e-03	1.0000	230.0	1.89%	809.1	2.20%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-7.821e-03	1.0000	1476.0	12.15%	4730.2	12.88%
ABI5(bZIP)/col-ABI5-DAP-Seq(GSE60143)/Homer	GCCACGTG	1e0	-7.564e-03	1.0000	504.0	4.15%	1690.9	4.60%
WRKY26(WRKY)/colamp-WRKY26-DAP-Seq(GSE60143)/Homer	CGTTGACTWDKN	1e0	-7.442e-03	1.0000	219.0	1.80%	775.5	2.11%
ANAC062(NAC)/colamp-ANAC062-DAP-Seq(GSE60143)/Homer	TACTTANTNWNYAAG	1e0	-7.415e-03	1.0000	215.0	1.77%	762.9	2.08%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-7.310e-03	1.0000	149.0	1.23%	545.2	1.48%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-7.083e-03	1.0000	34.0	0.28%	151.1	0.41%
WRKY24(WRKY)/colamp-WRKY24-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e0	-6.873e-03	1.0000	357.0	2.94%	1223.8	3.33%
TCP16(TCP)/colamp-TCP16-DAP-Seq(GSE60143)/Homer	GTGGDCCYNNNNNNN	1e0	-6.573e-03	1.0000	426.0	3.51%	1445.9	3.94%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-6.451e-03	1.0000	162.0	1.33%	590.3	1.61%
ANAC050(NAC)/colamp-ANAC050-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAAG	1e0	-6.069e-03	1.0000	340.0	2.80%	1171.4	3.19%
GBF3(bZIP)/Arabidopsis-GBF3-ChIP-Seq(GSE80564)/Homer	TGCCACGTSAYC	1e0	-5.736e-03	1.0000	304.0	2.50%	1056.3	2.88%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-5.521e-03	1.0000	37.0	0.30%	164.2	0.45%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-5.521e-03	1.0000	37.0	0.30%	164.2	0.45%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e0	-5.090e-03	1.0000	661.0	5.44%	2198.9	5.99%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-4.806e-03	1.0000	455.0	3.75%	1545.7	4.21%
WRKY18(WRKY)/col-WRKY18-DAP-Seq(GSE60143)/Homer	NNNTTGACYWNNNNN	1e0	-4.787e-03	1.0000	739.0	6.08%	2446.5	6.66%
LCL1(MYBrelated)/colamp-LCL1-DAP-Seq(GSE60143)/Homer	NAAAATATCTWHWWN	1e0	-4.649e-03	1.0000	85.0	0.70%	335.4	0.91%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-4.581e-03	1.0000	101.0	0.83%	390.8	1.06%
At5g47390(MYBrelated)/col-At5g47390-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e0	-4.574e-03	1.0000	810.0	6.67%	2671.8	7.27%
ANAC005(NAC)/col-ANAC005-DAP-Seq(GSE60143)/Homer	WVCTTVTWNHABAAG	1e0	-4.484e-03	1.0000	313.0	2.58%	1090.1	2.97%
MYB63(MYB)/col-MYB63-DAP-Seq(GSE60143)/Homer	BHYACCWACCHH	1e0	-4.237e-03	1.0000	276.0	2.27%	971.6	2.64%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-4.146e-03	1.0000	542.0	4.46%	1826.2	4.97%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-4.129e-03	1.0000	91.0	0.75%	357.1	0.97%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-3.950e-03	1.0000	493.0	4.06%	1671.7	4.55%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-3.835e-03	1.0000	2010.0	16.55%	6412.6	17.46%
WRKY8(WRKY)/colamp-WRKY8-DAP-Seq(GSE60143)/Homer	CGTTGACTTT	1e0	-3.819e-03	1.0000	40.0	0.33%	178.2	0.49%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-3.582e-03	1.0000	883.0	7.27%	2908.3	7.92%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e0	-3.570e-03	1.0000	224.0	1.84%	804.8	2.19%
MYB121(MYB)/col-MYB121-DAP-Seq(GSE60143)/Homer	YNTACCTAACWW	1e0	-3.564e-03	1.0000	184.0	1.51%	672.8	1.83%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-3.398e-03	1.0000	872.0	7.18%	2875.5	7.83%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-3.171e-03	1.0000	1159.0	9.54%	3777.4	10.28%
WRKY71(WRKY)/col-WRKY71-DAP-Seq(GSE60143)/Homer	CKTTGACYWW	1e0	-3.086e-03	1.0000	304.0	2.50%	1068.6	2.91%
ANAC017(NAC)/colamp-ANAC017-DAP-Seq(GSE60143)/Homer	TMCTTGNNNNNCAAG	1e0	-3.055e-03	1.0000	53.0	0.44%	227.1	0.62%
TCP7(TCP)/col-TCP7-DAP-Seq(GSE60143)/Homer	GTGGGSCCCACHHNN	1e0	-2.954e-03	1.0000	440.0	3.62%	1508.6	4.11%
GATA20(C2C2gata)/colamp-GATA20-DAP-Seq(GSE60143)/Homer	TNGATCNDNM	1e0	-2.780e-03	1.0000	1458.0	12.00%	4714.0	12.83%
AT2G40260(G2like)/colamp-AT2G40260-DAP-Seq(GSE60143)/Homer	WAAAYATTCTTT	1e0	-2.747e-03	1.0000	1076.0	8.86%	3522.5	9.59%
At1g72010(TCP)/colamp-At1g72010-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e0	-2.704e-03	1.0000	417.0	3.43%	1436.6	3.91%
CUC1(NAC)/col-CUC1-DAP-Seq(GSE60143)/Homer	TACTTGTNNNACAAG	1e0	-2.559e-03	1.0000	250.0	2.06%	895.9	2.44%
At1g68670(G2like)/colamp-At1g68670-DAP-Seq(GSE60143)/Homer	WNWWHNRAAGATTCT	1e0	-2.352e-03	1.0000	281.0	2.31%	998.6	2.72%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-2.293e-03	1.0000	1548.0	12.74%	5001.1	13.61%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-2.274e-03	1.0000	405.0	3.33%	1401.2	3.81%
TCP20(TCP)/col-TCP20-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e0	-2.235e-03	1.0000	352.0	2.90%	1230.3	3.35%
AT3G10580(MYBrelated)/colamp-AT3G10580-DAP-Seq(GSE60143)/Homer	TACCTAACWNHW	1e0	-2.133e-03	1.0000	236.0	1.94%	852.8	2.32%
GATA12(C2C2gata)/col-GATA12-DAP-Seq(GSE60143)/Homer	YAGATCTRAW	1e0	-2.126e-03	1.0000	373.0	3.07%	1299.5	3.54%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-2.102e-03	1.0000	420.0	3.46%	1451.0	3.95%
MYB62(MYB)/colamp-MYB62-DAP-Seq(GSE60143)/Homer	NTACCTAACT	1e0	-1.879e-03	1.0000	963.0	7.93%	3179.7	8.66%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-1.867e-03	1.0000	350.0	2.88%	1227.4	3.34%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-1.741e-03	1.0000	1443.0	11.88%	4684.7	12.75%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-1.691e-03	1.0000	264.0	2.17%	948.8	2.58%
MS188(MYB)/colamp-MS188-DAP-Seq(GSE60143)/Homer	WARKTAGGTRRA	1e0	-1.639e-03	1.0000	437.0	3.60%	1511.4	4.11%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-1.607e-03	1.0000	1411.0	11.62%	4587.4	12.49%
HSF3(HSF)/colamp-HSF3-DAP-Seq(GSE60143)/Homer	NTTCTAGAAKCTTCT	1e0	-1.424e-03	1.0000	545.0	4.49%	1861.3	5.07%
GATA11(C2C2gata)/col-GATA11-DAP-Seq(GSE60143)/Homer	DDHYYAGATCTR	1e0	-1.402e-03	1.0000	267.0	2.20%	961.4	2.62%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-1.381e-03	1.0000	503.0	4.14%	1727.3	4.70%
MYB13(MYB)/col-MYB13-DAP-Seq(GSE60143)/Homer	HYCACCWACCHH	1e0	-1.162e-03	1.0000	378.0	3.11%	1327.7	3.61%
MYB57(MYB)/col-MYB57-DAP-Seq(GSE60143)/Homer	TTACCTAACT	1e0	-1.157e-03	1.0000	253.0	2.08%	918.5	2.50%
WRKY55(WRKY)/col-WRKY55-DAP-Seq(GSE60143)/Homer	NCGTTGACTT	1e0	-1.118e-03	1.0000	491.0	4.04%	1693.9	4.61%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e0	-1.092e-03	1.0000	2736.0	22.52%	8704.6	23.70%
WRKY14(WRKY)/colamp-WRKY14-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTN	1e0	-1.074e-03	1.0000	191.0	1.57%	713.2	1.94%
bHLH122(bHLH)/col100-bHLH122-DAP-Seq(GSE60143)/Homer	NDDCAASTTGHHNWW	1e0	-1.062e-03	1.0000	468.0	3.85%	1620.0	4.41%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-9.930e-04	1.0000	21.0	0.17%	115.2	0.31%
BZR1(BZR)/col-BZR1-DAP-Seq(GSE60143)/Homer	NNCRCACGTGCG	1e0	-8.140e-04	1.0000	121.0	1.00%	479.6	1.31%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-8.020e-04	1.0000	41.0	0.34%	194.2	0.53%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-7.730e-04	1.0000	1322.0	10.88%	4333.4	11.80%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-6.510e-04	1.0000	718.0	5.91%	2432.9	6.62%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-6.450e-04	1.0000	243.0	2.00%	894.7	2.44%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-6.070e-04	1.0000	1425.0	11.73%	4663.5	12.69%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-5.910e-04	1.0000	644.0	5.30%	2198.9	5.99%
ANAC011(NAC)/col-ANAC011-DAP-Seq(GSE60143)/Homer	TDCTTGYRNNDCAAG	1e0	-5.740e-04	1.0000	217.0	1.79%	809.4	2.20%
GATA14(C2C2gata)/col-GATA14-DAP-Seq(GSE60143)/Homer	AYCAGATCTG	1e0	-5.130e-04	1.0000	440.0	3.62%	1545.0	4.21%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-4.940e-04	1.0000	875.0	7.20%	2938.2	8.00%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-4.930e-04	1.0000	595.0	4.90%	2045.5	5.57%
ANAC004(NAC)/colamp-ANAC004-DAP-Seq(GSE60143)/Homer	WNCTTVYNNNRBAAG	1e0	-4.530e-04	1.0000	202.0	1.66%	762.8	2.08%
AT5G61620(MYBrelated)/colamp-AT5G61620-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e0	-4.210e-04	1.0000	915.0	7.53%	3069.5	8.36%
MYB49(MYB)/col-MYB49-DAP-Seq(GSE60143)/Homer	ARKTAGGTRR	1e0	-4.090e-04	1.0000	682.0	5.61%	2328.9	6.34%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-3.770e-04	1.0000	792.0	6.52%	2681.7	7.30%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-3.490e-04	1.0000	374.0	3.08%	1336.8	3.64%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-2.530e-04	1.0000	558.0	4.59%	1940.8	5.28%
AT5G25475(ABI3VP1)/col-AT5G25475-DAP-Seq(GSE60143)/Homer	RNNRNCAAGCADNDB	1e0	-2.320e-04	1.0000	1196.0	9.85%	3973.4	10.82%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-2.090e-04	1.0000	1688.0	13.90%	5519.9	15.03%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-2.040e-04	1.0000	349.0	2.87%	1263.5	3.44%
WRKY27(WRKY)/colamp-WRKY27-DAP-Seq(GSE60143)/Homer	NHGTTGACYTWD	1e0	-2.010e-04	1.0000	408.0	3.36%	1457.3	3.97%
FUS3(ABI3VP1)/col-FUS3-DAP-Seq(GSE60143)/Homer	DNNWTNTGCATGKNN	1e0	-1.990e-04	1.0000	966.0	7.95%	3250.1	8.85%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-1.940e-04	1.0000	424.0	3.49%	1510.8	4.11%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-1.790e-04	1.0000	680.0	5.60%	2340.6	6.37%
AT5G56840(MYBrelated)/colamp-AT5G56840-DAP-Seq(GSE60143)/Homer	TGGATAAGGT	1e0	-1.740e-04	1.0000	780.0	6.42%	2661.1	7.24%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.730e-04	1.0000	42.0	0.35%	209.9	0.57%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.610e-04	1.0000	295.0	2.43%	1088.7	2.96%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-1.550e-04	1.0000	141.0	1.16%	567.5	1.54%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-1.540e-04	1.0000	302.0	2.49%	1112.6	3.03%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-1.510e-04	1.0000	1919.0	15.80%	6250.5	17.01%
WRKY29(WRKY)/colamp-WRKY29-DAP-Seq(GSE60143)/Homer	MGTTGACTTT	1e0	-1.500e-04	1.0000	448.0	3.69%	1593.0	4.34%
KAN2(G2like)/colamp-KAN2-DAP-Seq(GSE60143)/Homer	ATATTCTY	1e0	-1.320e-04	1.0000	915.0	7.53%	3098.7	8.44%
MYB4(MYB)/col200-MYB4-DAP-Seq(GSE60143)/Homer	WAGKTAGGTARR	1e0	-1.170e-04	1.0000	352.0	2.90%	1282.7	3.49%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-1.160e-04	1.0000	197.0	1.62%	763.4	2.08%
At4g36780(BZR)/col-At4g36780-DAP-Seq(GSE60143)/Homer	NNNNNNCACGTGNNN	1e0	-1.150e-04	1.0000	316.0	2.60%	1163.4	3.17%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e0	-1.050e-04	1.0000	240.0	1.98%	910.3	2.48%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.030e-04	1.0000	640.0	5.27%	2223.4	6.05%
At5g58900(MYBrelated)/colamp-At5g58900-DAP-Seq(GSE60143)/Homer	WWWTYTTATCTWWWW	1e0	-1.020e-04	1.0000	935.0	7.70%	3168.8	8.63%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-9.400e-05	1.0000	19.0	0.16%	120.4	0.33%
WRKY45(WRKY)/col-WRKY45-DAP-Seq(GSE60143)/Homer	HNNNKTTGACTWWNH	1e0	-8.200e-05	1.0000	160.0	1.32%	640.7	1.74%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-7.700e-05	1.0000	292.0	2.40%	1089.3	2.97%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e0	-7.000e-05	1.0000	788.0	6.49%	2707.8	7.37%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-7.000e-05	1.0000	56.0	0.46%	269.6	0.73%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-6.900e-05	1.0000	738.0	6.08%	2547.2	6.93%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-6.600e-05	1.0000	739.0	6.08%	2551.1	6.94%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-5.800e-05	1.0000	3.0	0.02%	44.9	0.12%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-4.600e-05	1.0000	657.0	5.41%	2294.6	6.25%
WRKY22(WRKY)/colamp-WRKY22-DAP-Seq(GSE60143)/Homer	WWAAAGTCAACK	1e0	-4.600e-05	1.0000	253.0	2.08%	965.4	2.63%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-4.500e-05	1.0000	529.0	4.35%	1879.9	5.12%
At5g08330(TCP)/col-At5g08330-DAP-Seq(GSE60143)/Homer	GGRCCCAC	1e0	-4.200e-05	1.0000	486.0	4.00%	1740.6	4.74%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-3.400e-05	1.0000	177.0	1.46%	709.2	1.93%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e0	-3.300e-05	1.0000	276.0	2.27%	1047.1	2.85%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-3.200e-05	1.0000	703.0	5.79%	2450.9	6.67%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-3.000e-05	1.0000	19.0	0.16%	126.3	0.34%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-2.300e-05	1.0000	461.0	3.79%	1668.3	4.54%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-2.100e-05	1.0000	723.0	5.95%	2524.0	6.87%
MYB74(MYB)/colamp-MYB74-DAP-Seq(GSE60143)/Homer	YYYACCTACCWH	1e0	-1.900e-05	1.0000	316.0	2.60%	1189.8	3.24%
At4g18890(BZR)/col-At4g18890-DAP-Seq(GSE60143)/Homer	NDBRCACGTGYR	1e0	-1.800e-05	1.0000	210.0	1.73%	830.4	2.26%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-1.500e-05	1.0000	204.0	1.68%	812.5	2.21%
At1g49010(MYBrelated)/col-At1g49010-DAP-Seq(GSE60143)/Homer	RGATAASNTT	1e0	-1.200e-05	1.0000	1246.0	10.26%	4209.7	11.46%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-1.000e-05	1.0000	23.0	0.19%	149.1	0.41%
BAM8(BES1)/col-BAM8-DAP-Seq(GSE60143)/Homer	NNWSACACGTGTSWN	1e0	-1.000e-05	1.0000	111.0	0.91%	489.0	1.33%
BOS1(MYB)/col-BOS1-DAP-Seq(GSE60143)/Homer	NNRCCTAACT	1e0	-1.000e-05	1.0000	660.0	5.43%	2333.6	6.35%
At1g78700(BZR)/col-At1g78700-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNNNNN	1e0	-7.000e-06	1.0000	336.0	2.77%	1271.7	3.46%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e0	-2.000e-06	1.0000	647.0	5.33%	2316.8	6.31%
MYB116(MYB)/colamp-MYB116-DAP-Seq(GSE60143)/Homer	AGTTAGGCAN	1e0	-2.000e-06	1.0000	421.0	3.47%	1572.9	4.28%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e0	-2.000e-06	1.0000	267.0	2.20%	1052.2	2.86%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.000e-06	1.0000	998.0	8.22%	3478.8	9.47%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e0	-0.000e+00	1.0000	921.0	7.58%	3246.1	8.84%
BIM2(bHLH)/col-BIM2-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNN	1e0	-0.000e+00	1.0000	759.0	6.25%	2720.2	7.40%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-0.000e+00	1.0000	3891.0	32.03%	12568.3	34.21%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e0	-0.000e+00	1.0000	1025.0	8.44%	3601.7	9.80%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-0.000e+00	1.0000	1.0	0.01%	52.2	0.14%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-0.000e+00	1.0000	1005.0	8.27%	3561.1	9.69%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-0.000e+00	1.0000	127.0	1.05%	602.6	1.64%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-0.000e+00	1.0000	1559.0	12.83%	5354.6	14.58%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-0.000e+00	1.0000	79.0	0.65%	439.6	1.20%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-0.000e+00	1.0000	233.0	1.92%	1020.6	2.78%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e0	-0.000e+00	1.0000	315.0	2.59%	1386.8	3.78%
AT4G12670(MYBrelated)/col-AT4G12670-DAP-Seq(GSE60143)/Homer	AGGGTTTAGGGTTTA	1e0	0.000e+00	1.0000	0.0	0.00%	1.1	0.00%
REM16(ABI3VP1)/col-REM16-DAP-Seq(GSE60143)/Homer	DTTTTTSCCGSMAAA	1e0	0.000e+00	1.0000	0.0	0.00%	0.7	0.00%