Information for 25-CGTCTAGT (Motif 33)

A G T C A C T G A C G T A G T C A C G T C G T A A C T G A C G T
Reverse Opposite:
C G T A A G T C A C G T C G T A A C T G C G T A A G T C A C T G
p-value:1e-4
log p-value:-1.042e+01
Information Content per bp:1.530
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif0.14%
Number of Background Sequences with motif17.6
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets115.8 +/- 47.1bp
Average Position of motif in Background105.2 +/- 59.7bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PFF0320c(RRM)/Plasmodium_falciparum-RNCMPT00235-PBM/HughesRNA

Match Rank:1
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:CGTCTAGT
-GTTTAGT
 A G T C A C T G A C G T A G T C A C G T C G T A A C T G A C G T
A C G T C A T G G C A T A G C T A C G T C G T A A C T G A G C T

ANKHD1(KH)/Homo_sapiens-RNCMPT00002-PBM/HughesRNA

Match Rank:2
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--CGTCTAGT
TACGTCT---
 A C G T A C G T A G T C A C T G A C G T A G T C A C G T C G T A A C T G A C G T
G C A T C G T A A G T C A C T G A C G T A G T C A C G T A C G T A C G T A C G T

SMAD3/MA0795.1/Jaspar

Match Rank:3
Score:0.72
Offset:0
Orientation:forward strand
Alignment:CGTCTAGT--
CGTCTAGACA
 A G T C A C T G A C G T A G T C A C G T C G T A A C T G A C G T A C G T A C G T
G A T C C T A G C G A T T A G C A G C T T G C A A T C G G T C A G A T C G C T A

ABF2/MA0266.1/Jaspar

Match Rank:4
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:CGTCTAGT-
--TCTAGAN
 A G T C A C T G A C G T A G T C A C G T C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A G T C A C G T C G T A A C T G C G T A A T C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---CGTCTAGT
VBSYGTCTGG-
 A C G T A C G T A C G T A G T C A C T G A C G T A G T C A C G T C G T A A C T G A C G T
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CGTCTAGT
CTGTCTGG-
 A C G T A G T C A C T G A C G T A G T C A C G T C G T A A C T G A C G T
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:7
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----CGTCTAGT----
NNTNNTGTCTGGNNTNG
 A C G T A C G T A C G T A C G T A C G T A G T C A C T G A C G T A G T C A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

br(var.3)/MA0012.1/Jaspar

Match Rank:8
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CGTCTAGT---
CNTTTAGTTTA
 A G T C A C T G A C G T A G T C A C G T C G T A A C T G A C G T A C G T A C G T A C G T
A T G C C A G T G C A T G A C T C G A T C G T A T A C G A C G T C G A T A C G T C G T A

ARG80(MacIsaac)/Yeast

Match Rank:9
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CGTCTAGT
GCGTCT---
 A C G T A G T C A C T G A C G T A G T C A C G T C G T A A C T G A C G T
C T A G G T A C A C T G A C G T A G T C C G A T A C G T A C G T A C G T

ARG80/MA0271.1/Jaspar

Match Rank:10
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CGTCTAGT
GCGTCT---
 A C G T A G T C A C T G A C G T A G T C A C G T C G T A A C T G A C G T
C T A G G T A C A C T G A C G T A G T C C G A T A C G T A C G T A C G T