Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 14693)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 34021)	% of Background Sequences with Motif
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-15429	-3.553e+04	0.0000	10466.0	71.23%	493.3	1.45%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-12880	-2.966e+04	0.0000	10635.0	72.38%	934.3	2.76%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-399	-9.207e+02	0.0000	406.0	2.76%	38.6	0.11%
E2FA(E2FDP)/colamp-E2FA-DAP-Seq(GSE60143)/Homer	WWTGGCGCCAWWWNN	1e-351	-8.087e+02	0.0000	1548.0	10.54%	1089.1	3.21%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-198	-4.565e+02	0.0000	2003.0	13.63%	2252.8	6.64%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-179	-4.140e+02	0.0000	2322.0	15.80%	2884.3	8.51%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-172	-3.969e+02	0.0000	2206.0	15.01%	2726.8	8.04%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-130	-3.008e+02	0.0000	4501.0	30.63%	7448.4	21.97%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-110	-2.544e+02	0.0000	5164.0	35.15%	9064.6	26.74%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-109	-2.513e+02	0.0000	3341.0	22.74%	5324.4	15.70%
SeqBias: CG bias	SSSSSSSSSS	1e-105	-2.436e+02	0.0000	12482.0	84.95%	26366.2	77.77%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-86	-1.994e+02	0.0000	7959.0	54.17%	15601.4	46.02%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-83	-1.912e+02	0.0000	3737.0	25.43%	6418.0	18.93%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-68	-1.578e+02	0.0000	5534.0	37.66%	10460.6	30.85%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-57	-1.327e+02	0.0000	3413.0	23.23%	6090.8	17.97%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-55	-1.282e+02	0.0000	2376.0	16.17%	3990.0	11.77%
bZIP18(bZIP)/colamp-bZIP18-DAP-Seq(GSE60143)/Homer	KGMCAGCTND	1e-55	-1.268e+02	0.0000	8520.0	57.99%	17471.8	51.53%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e-54	-1.255e+02	0.0000	3765.0	25.62%	6878.5	20.29%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-53	-1.238e+02	0.0000	5282.0	35.95%	10166.7	29.99%
NGA4(ABI3VP1)/col-NGA4-DAP-Seq(GSE60143)/Homer	TKNTCAGGTG	1e-51	-1.192e+02	0.0000	4981.0	33.90%	9544.6	28.15%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-45	-1.050e+02	0.0000	3229.0	21.98%	5892.0	17.38%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e-37	-8.660e+01	0.0000	1489.0	10.13%	2449.8	7.23%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e-34	-7.851e+01	0.0000	3563.0	24.25%	6814.7	20.10%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-32	-7.597e+01	0.0000	837.0	5.70%	1247.3	3.68%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-32	-7.499e+01	0.0000	4115.0	28.01%	8043.6	23.73%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e-31	-7.284e+01	0.0000	1571.0	10.69%	2690.8	7.94%
At3g60580(C2H2)/col-At3g60580-DAP-Seq(GSE60143)/Homer	WTTYTACT	1e-31	-7.277e+01	0.0000	7425.0	50.53%	15487.6	45.68%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e-31	-7.153e+01	0.0000	279.0	1.90%	293.7	0.87%
DEL2(E2FDP)/col-DEL2-DAP-Seq(GSE60143)/Homer	WTTTCSCGCC	1e-30	-6.935e+01	0.0000	677.0	4.61%	978.4	2.89%
SeqBias: polyC-repeat	CCCCCCCCCC	1e-27	-6.442e+01	0.0000	14577.0	99.21%	33261.7	98.11%
SeqBias: A/T bias	WWWWWWWWWW	1e-25	-5.979e+01	0.0000	10459.0	71.18%	22751.3	67.11%
Tal1	CATCTG	1e-25	-5.808e+01	0.0000	2162.0	14.71%	4011.9	11.83%
AZF1(C2H2)/colamp-AZF1-DAP-Seq(GSE60143)/Homer	DKSWCACT	1e-24	-5.656e+01	0.0000	7744.0	52.71%	16424.6	48.45%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-23	-5.494e+01	0.0000	6036.0	41.08%	12544.1	37.00%
SeqBias: polyA-repeat	AAAAAAAAAA	1e-21	-4.905e+01	0.0000	14133.0	96.19%	32030.9	94.48%
At5g62940(C2C2dof)/col-At5g62940-DAP-Seq(GSE60143)/Homer	WHWHHACTTTTT	1e-20	-4.718e+01	0.0000	4630.0	31.51%	9490.5	27.99%
JGL(C2H2)/col-JGL-DAP-Seq(GSE60143)/Homer	ACYTTCAGTT	1e-19	-4.401e+01	0.0000	2162.0	14.71%	4138.0	12.21%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-18	-4.348e+01	0.0000	2145.0	14.60%	4106.4	12.11%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-17	-4.129e+01	0.0000	1030.0	7.01%	1802.9	5.32%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-17	-4.020e+01	0.0000	789.0	5.37%	1327.2	3.91%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-16	-3.913e+01	0.0000	2190.0	14.91%	4246.4	12.52%
At1g75490(AP2EREBP)/colamp-At1g75490-DAP-Seq(GSE60143)/Homer	CACCGMCT	1e-16	-3.867e+01	0.0000	2400.0	16.33%	4703.0	13.87%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-16	-3.845e+01	0.0000	5488.0	37.35%	11540.0	34.04%
MYB101(MYB)/colamp-MYB101-DAP-Seq(GSE60143)/Homer	TAACNRMY	1e-16	-3.705e+01	0.0000	2566.0	17.46%	5079.9	14.98%
MYB73(MYB)/col-MYB73-DAP-Seq(GSE60143)/Homer	NNNNHAACNGHHDHN	1e-15	-3.588e+01	0.0000	2289.0	15.58%	4494.6	13.26%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-15	-3.580e+01	0.0000	949.0	6.46%	1676.7	4.95%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e-15	-3.562e+01	0.0000	328.0	2.23%	469.3	1.38%
AT3G52440(C2C2dof)/colamp-AT3G52440-DAP-Seq(GSE60143)/Homer	DTHACTTTTT	1e-15	-3.545e+01	0.0000	3044.0	20.72%	6140.5	18.11%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-15	-3.467e+01	0.0000	2523.0	17.17%	5014.8	14.79%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-14	-3.441e+01	0.0000	2011.0	13.69%	3913.2	11.54%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-14	-3.318e+01	0.0000	796.0	5.42%	1385.2	4.09%
CRF4(AP2EREBP)/colamp-CRF4-DAP-Seq(GSE60143)/Homer	CGCCGCCA	1e-14	-3.316e+01	0.0000	1085.0	7.38%	1974.9	5.83%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-14	-3.302e+01	0.0000	2470.0	16.81%	4919.4	14.51%
CRF10(AP2EREBP)/col100-CRF10-DAP-Seq(GSE60143)/Homer	DCCGCCGYHA	1e-14	-3.301e+01	0.0000	1967.0	13.39%	3834.5	11.31%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-13	-3.181e+01	0.0000	5610.0	38.18%	11923.4	35.17%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-13	-3.081e+01	0.0000	1186.0	8.07%	2203.4	6.50%
ASHR1(ND)/col-ASHR1-DAP-Seq(GSE60143)/Homer	NTGGTGAN	1e-13	-3.048e+01	0.0000	1855.0	12.63%	3623.0	10.69%
MYB88(MYB)/col-MYB88-DAP-Seq(GSE60143)/Homer	HNACGCTCCT	1e-13	-3.032e+01	0.0000	3387.0	23.05%	6966.2	20.55%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-13	-3.021e+01	0.0000	1206.0	8.21%	2250.9	6.64%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-12	-2.958e+01	0.0000	920.0	6.26%	1663.5	4.91%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-12	-2.935e+01	0.0000	118.0	0.80%	128.0	0.38%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e-12	-2.898e+01	0.0000	676.0	4.60%	1172.3	3.46%
SeqBias: C/A-bias	MMMMMMMMMM	1e-12	-2.883e+01	0.0000	14664.0	99.80%	33701.3	99.40%
SOL1(CPP)/colamp-SOL1-DAP-Seq(GSE60143)/Homer	ATTTAAATHN	1e-12	-2.878e+01	0.0000	1826.0	12.43%	3579.7	10.56%
AT1G28160(AP2EREBP)/colamp-AT1G28160-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e-12	-2.870e+01	0.0000	2992.0	20.36%	6118.8	18.05%
AT1G47655(C2C2dof)/colamp-AT1G47655-DAP-Seq(GSE60143)/Homer	YHACTTTTTS	1e-12	-2.843e+01	0.0000	4677.0	31.83%	9875.3	29.13%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-12	-2.842e+01	0.0000	1534.0	10.44%	2959.7	8.73%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e-12	-2.803e+01	0.0000	9991.0	68.00%	22114.7	65.23%
AT3G12130(C3H)/colamp-AT3G12130-DAP-Seq(GSE60143)/Homer	TMACTTTTTV	1e-12	-2.802e+01	0.0000	3290.0	22.39%	6786.2	20.02%
LBD18(LOBAS2)/colamp-LBD18-DAP-Seq(GSE60143)/Homer	CKGAWWTTCHGS	1e-11	-2.753e+01	0.0000	3358.0	22.85%	6944.4	20.48%
At5g04390(C2H2)/col200-At5g04390-DAP-Seq(GSE60143)/Homer	AGTGANDN	1e-11	-2.693e+01	0.0000	7625.0	51.90%	16623.1	49.03%
AT5G47660(Trihelix)/colamp-AT5G47660-DAP-Seq(GSE60143)/Homer	AWTTTTACCG	1e-11	-2.661e+01	0.0000	1771.0	12.05%	3486.6	10.28%
AT2G28810(C2C2dof)/colamp-AT2G28810-DAP-Seq(GSE60143)/Homer	VAAAAAGTWA	1e-11	-2.644e+01	0.0000	3171.0	21.58%	6547.9	19.31%
TCX2(CPP)/colamp-TCX2-DAP-Seq(GSE60143)/Homer	NNWWTTYRAAHN	1e-11	-2.641e+01	0.0000	1847.0	12.57%	3652.9	10.77%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-11	-2.637e+01	0.0000	963.0	6.55%	1778.7	5.25%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e-11	-2.613e+01	0.0000	1072.0	7.30%	2007.4	5.92%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-11	-2.541e+01	0.0000	1729.0	11.77%	3410.8	10.06%
OBP1(C2C2dof)/col-OBP1-DAP-Seq(GSE60143)/Homer	NHHACTTTWT	1e-10	-2.518e+01	0.0000	3649.0	24.83%	7629.8	22.50%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-10	-2.471e+01	0.0000	815.0	5.55%	1486.5	4.38%
OBP3(C2C2dof)/col-OBP3-DAP-Seq(GSE60143)/Homer	NYWACTTTTT	1e-10	-2.454e+01	0.0000	4058.0	27.62%	8554.2	25.23%
ERF7(AP2EREBP)/col-ERF7-DAP-Seq(GSE60143)/Homer	ATGRCGGCGG	1e-10	-2.448e+01	0.0000	1915.0	13.03%	3823.1	11.28%
AT2G20110(CPP)/colamp-AT2G20110-DAP-Seq(GSE60143)/Homer	ATTYAAATHY	1e-10	-2.413e+01	0.0000	1751.0	11.92%	3474.0	10.25%
AT5G66940(C2C2dof)/col-AT5G66940-DAP-Seq(GSE60143)/Homer	NNHACTTTWT	1e-10	-2.386e+01	0.0000	2549.0	17.35%	5215.8	15.38%
AT5G05550(Trihelix)/col-AT5G05550-DAP-Seq(GSE60143)/Homer	HDNHDTCKCCGGMGA	1e-10	-2.369e+01	0.0000	1913.0	13.02%	3829.5	11.30%
ERF105(AP2EREBP)/colamp-ERF105-DAP-Seq(GSE60143)/Homer	TGGCGGCT	1e-10	-2.303e+01	0.0000	2335.0	15.89%	4758.7	14.04%
dof24(C2C2dof)/col-dof24-DAP-Seq(GSE60143)/Homer	TWMCTTTTTG	1e-9	-2.300e+01	0.0000	2712.0	18.46%	5587.9	16.48%
At5g18450(AP2EREBP)/col-At5g18450-DAP-Seq(GSE60143)/Homer	CACCGCTT	1e-9	-2.278e+01	0.0000	2527.0	17.20%	5183.9	15.29%
LBD19(LOBAS2)/colamp-LBD19-DAP-Seq(GSE60143)/Homer	CCKGAAWTTCMGGAW	1e-9	-2.273e+01	0.0000	2421.0	16.48%	4951.7	14.61%
dof45(C2C2dof)/col-dof45-DAP-Seq(GSE60143)/Homer	NVAWAAAGTN	1e-9	-2.244e+01	0.0000	3212.0	21.86%	6703.5	19.77%
At2g33710(AP2EREBP)/colamp-At2g33710-DAP-Seq(GSE60143)/Homer	WTKGCGGCKR	1e-9	-2.207e+01	0.0000	2601.0	17.70%	5357.3	15.80%
MYB51(MYB)/col-MYB51-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e-9	-2.187e+01	0.0000	1174.0	7.99%	2264.7	6.68%
CDF3(C2C2dof)/colamp-CDF3-DAP-Seq(GSE60143)/Homer	AAAAGTRM	1e-9	-2.179e+01	0.0000	2369.0	16.12%	4851.8	14.31%
WIP5(C2H2)/colamp-WIP5-DAP-Seq(GSE60143)/Homer	TDTTCTCMAGGT	1e-9	-2.167e+01	0.0000	1736.0	11.82%	3472.4	10.24%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-9	-2.137e+01	0.0000	1042.0	7.09%	1990.9	5.87%
GTL1(Trihelix)/colamp-GTL1-DAP-Seq(GSE60143)/Homer	WWTTTACCKY	1e-9	-2.075e+01	0.0000	1329.0	9.05%	2607.2	7.69%
AT2G33550(Trihelix)/colamp-AT2G33550-DAP-Seq(GSE60143)/Homer	TTTAAGGGCAYTTTT	1e-8	-2.015e+01	0.0000	2615.0	17.80%	5419.3	15.98%
TCP1(TCP)/col-TCP1-DAP-Seq(GSE60143)/Homer	GGGGGCCCMMCN	1e-8	-2.011e+01	0.0000	816.0	5.55%	1528.7	4.51%
WRKY50(WRKY)/col-WRKY50-DAP-Seq(GSE60143)/Homer	NNTTGACTWNNGNNN	1e-8	-2.009e+01	0.0000	1065.0	7.25%	2052.5	6.05%
AT1G69570(C2C2dof)/col-AT1G69570-DAP-Seq(GSE60143)/Homer	WAAAAGTGHH	1e-8	-1.973e+01	0.0000	1549.0	10.54%	3093.9	9.13%
AT3G51470(DBP)/col-AT3G51470-DAP-Seq(GSE60143)/Homer	TTWHGGTGCACC	1e-8	-1.925e+01	0.0000	1915.0	13.03%	3896.0	11.49%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-8	-1.916e+01	0.0000	103.0	0.70%	127.2	0.38%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-8	-1.900e+01	0.0000	480.0	3.27%	846.5	2.50%
HuR(?)/HEK293-HuR-CLIP-Seq(GSE87887)/Homer	BTTTGGTTTG	1e-8	-1.881e+01	0.0000	4206.0	28.63%	8997.4	26.54%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-8	-1.866e+01	0.0000	1217.0	8.28%	2392.1	7.06%
ABR1(AP2EREBP)/colamp-ABR1-DAP-Seq(GSE60143)/Homer	AAATGGCGGCGG	1e-8	-1.852e+01	0.0000	1328.0	9.04%	2632.5	7.76%
ATY13(MYB)/col-ATY13-DAP-Seq(GSE60143)/Homer	YYYAACYRHH	1e-8	-1.848e+01	0.0000	4351.0	29.61%	9331.7	27.52%
COG1(C2C2dof)/col-COG1-DAP-Seq(GSE60143)/Homer	DAAAAAGTGA	1e-7	-1.833e+01	0.0000	1878.0	12.78%	3828.6	11.29%
DREB19(AP2EREBP)/colamp-DREB19-DAP-Seq(GSE60143)/Homer	AATGTCGGTK	1e-7	-1.826e+01	0.0000	574.0	3.91%	1043.1	3.08%
AT1G20910(ARID)/col-AT1G20910-DAP-Seq(GSE60143)/Homer	THAATTRAWN	1e-7	-1.821e+01	0.0000	1748.0	11.90%	3546.0	10.46%
LBD23(LOBAS2)/colamp-LBD23-DAP-Seq(GSE60143)/Homer	GCGNAWWWTNCGCYW	1e-7	-1.817e+01	0.0000	1217.0	8.28%	2398.5	7.07%
MYB70(MYB)/col-MYB70-DAP-Seq(GSE60143)/Homer	WTAACNGTTA	1e-7	-1.817e+01	0.0000	1654.0	11.26%	3342.2	9.86%
RAP26(AP2EREBP)/colamp-RAP26-DAP-Seq(GSE60143)/Homer	HDATGGCGGCGG	1e-7	-1.797e+01	0.0000	1666.0	11.34%	3371.0	9.94%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-7	-1.797e+01	0.0000	156.0	1.06%	224.0	0.66%
DEAR2(AP2EREBP)/colamp-DEAR2-DAP-Seq(GSE60143)/Homer	HCACCGACAWHD	1e-7	-1.758e+01	0.0000	1160.0	7.89%	2283.9	6.74%
SPL15(SBP)/colamp-SPL15-DAP-Seq(GSE60143)/Homer	WDWMMGTACADW	1e-7	-1.750e+01	0.0000	1353.0	9.21%	2699.8	7.96%
ERF15(AP2EREBP)/colamp-ERF15-DAP-Seq(GSE60143)/Homer	WDHAGCMGCCAT	1e-7	-1.736e+01	0.0000	3596.0	24.47%	7656.3	22.58%
WRKY25(WRKY)/colamp-WRKY25-DAP-Seq(GSE60143)/Homer	NNNNHRGTCAAMNNN	1e-7	-1.718e+01	0.0000	1083.0	7.37%	2123.0	6.26%
OBP4(C2C2dof)/col-OBP4-DAP-Seq(GSE60143)/Homer	WTTHACTTTTTB	1e-7	-1.714e+01	0.0000	1808.0	12.31%	3693.0	10.89%
AT2G15740(C2H2)/col-AT2G15740-DAP-Seq(GSE60143)/Homer	DHNDWATCGATD	1e-7	-1.703e+01	0.0000	657.0	4.47%	1225.9	3.62%
DAG2(C2C2dof)/col-DAG2-DAP-Seq(GSE60143)/Homer	WWTTHACTTTTT	1e-7	-1.703e+01	0.0000	2078.0	14.14%	4287.7	12.65%
ERF115(AP2EREBP)/colamp-ERF115-DAP-Seq(GSE60143)/Homer	WTKRCGGCGB	1e-7	-1.691e+01	0.0000	2236.0	15.22%	4638.0	13.68%
MYB65(MYB)/colamp-MYB65-DAP-Seq(GSE60143)/Homer	RACNGTTA	1e-7	-1.675e+01	0.0000	1303.0	8.87%	2601.8	7.67%
MYB99(MYB)/colamp-MYB99-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e-7	-1.675e+01	0.0000	1165.0	7.93%	2305.0	6.80%
AT5G63260(C3H)/col-AT5G63260-DAP-Seq(GSE60143)/Homer	RAAAAAGTRA	1e-7	-1.674e+01	0.0000	3076.0	20.94%	6505.1	19.19%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-7	-1.662e+01	0.0000	1385.0	9.43%	2781.0	8.20%
MYB77(MYB)/col-MYB77-DAP-Seq(GSE60143)/Homer	NYAACBGYMC	1e-7	-1.640e+01	0.0000	1621.0	11.03%	3296.4	9.72%
WRKY20(WRKY)/col-WRKY20-DAP-Seq(GSE60143)/Homer	CKTTGACYWD	1e-7	-1.630e+01	0.0000	745.0	5.07%	1416.2	4.18%
SeqBias: TA-repeat	TATATATATA	1e-6	-1.607e+01	0.0000	2902.0	19.75%	6130.8	18.08%
Adof1(C2C2dof)/col-Adof1-DAP-Seq(GSE60143)/Homer	NRWAAAGYDV	1e-6	-1.600e+01	0.0000	3528.0	24.01%	7532.0	22.22%
At1g64620(C2C2dof)/colamp-At1g64620-DAP-Seq(GSE60143)/Homer	CACTTTTT	1e-6	-1.577e+01	0.0000	2013.0	13.70%	4166.0	12.29%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-6	-1.575e+01	0.0000	1281.0	8.72%	2567.7	7.57%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-6	-1.572e+01	0.0000	746.0	5.08%	1424.1	4.20%
AT5G02460(C2C2dof)/col-AT5G02460-DAP-Seq(GSE60143)/Homer	CHCCTTTT	1e-6	-1.570e+01	0.0000	2844.0	19.36%	6008.0	17.72%
MYB55(MYB)/colamp-MYB55-DAP-Seq(GSE60143)/Homer	YACCWAMC	1e-6	-1.562e+01	0.0000	1349.0	9.18%	2716.8	8.01%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-6	-1.560e+01	0.0000	2349.0	15.99%	4910.5	14.48%
RAP211(AP2EREBP)/colamp-RAP211-DAP-Seq(GSE60143)/Homer	RGCCGGCYWW	1e-6	-1.536e+01	0.0000	3581.0	24.37%	7665.3	22.61%
bHLH130(bHLH)/col-bHLH130-DAP-Seq(GSE60143)/Homer	GCAACTTG	1e-6	-1.531e+01	0.0000	896.0	6.10%	1746.4	5.15%
GT2(Trihelix)/colamp-GT2-DAP-Seq(GSE60143)/Homer	AMGGTAAAWWWN	1e-6	-1.501e+01	0.0000	1250.0	8.51%	2510.5	7.40%
WRKY18(WRKY)/col-WRKY18-DAP-Seq(GSE60143)/Homer	NNNTTGACYWNNNNN	1e-6	-1.487e+01	0.0000	1708.0	11.62%	3510.2	10.35%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-6	-1.482e+01	0.0000	2977.0	20.26%	6323.7	18.65%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-6	-1.481e+01	0.0000	230.0	1.57%	376.2	1.11%
BBX31(Orphan)/col-BBX31-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e-6	-1.469e+01	0.0000	1990.0	13.54%	4134.0	12.19%
ERF11(AP2EREBP)/col-ERF11-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e-6	-1.466e+01	0.0000	1310.0	8.92%	2645.9	7.80%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-6	-1.402e+01	0.0000	77.0	0.52%	97.7	0.29%
AT5G60130(ABI3VP1)/col-AT5G60130-DAP-Seq(GSE60143)/Homer	WTTYTAAGVAAA	1e-5	-1.378e+01	0.0000	2246.0	15.29%	4716.7	13.91%
AT4G26030(C2H2)/col-AT4G26030-DAP-Seq(GSE60143)/Homer	BYYACCWACY	1e-5	-1.376e+01	0.0000	1222.0	8.32%	2467.3	7.28%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-5	-1.365e+01	0.0000	1078.0	7.34%	2157.8	6.36%
AT1G77200(AP2EREBP)/colamp-AT1G77200-DAP-Seq(GSE60143)/Homer	ACCGACAHWD	1e-5	-1.362e+01	0.0000	700.0	4.76%	1349.1	3.98%
AT3G10030(Trihelix)/colamp-AT3G10030-DAP-Seq(GSE60143)/Homer	GCCGTTAA	1e-5	-1.358e+01	0.0000	651.0	4.43%	1246.2	3.68%
STZ(C2H2)/colamp-STZ-DAP-Seq(GSE60143)/Homer	HNBTCACT	1e-5	-1.355e+01	0.0000	7561.0	51.46%	16788.1	49.52%
ERF4(AP2EREBP)/colamp-ERF4-DAP-Seq(GSE60143)/Homer	WDWTGGCGGCGG	1e-5	-1.343e+01	0.0000	1447.0	9.85%	2962.1	8.74%
WRKY75(WRKY)/col-WRKY75-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e-5	-1.338e+01	0.0000	916.0	6.23%	1812.8	5.35%
WRKY28(WRKY)/col-WRKY28-DAP-Seq(GSE60143)/Homer	BGTTGACTWH	1e-5	-1.313e+01	0.0000	1255.0	8.54%	2548.9	7.52%
dof43(C2C2dof)/colamp-dof43-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e-5	-1.307e+01	0.0000	1805.0	12.28%	3754.9	11.08%
MYB58(MYB)/colamp-MYB58-DAP-Seq(GSE60143)/Homer	YYYACCWACC	1e-5	-1.296e+01	0.0000	1159.0	7.89%	2342.3	6.91%
WRKY29(WRKY)/colamp-WRKY29-DAP-Seq(GSE60143)/Homer	MGTTGACTTT	1e-5	-1.287e+01	0.0000	966.0	6.57%	1926.6	5.68%
At4g38000(C2C2dof)/col-At4g38000-DAP-Seq(GSE60143)/Homer	WWWTWACTTTTT	1e-5	-1.279e+01	0.0000	1321.0	8.99%	2697.6	7.96%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-5	-1.268e+01	0.0000	1013.0	6.89%	2030.2	5.99%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-5	-1.250e+01	0.0000	781.0	5.32%	1534.5	4.53%
MYB33(MYB)/col-MYB33-DAP-Seq(GSE60143)/Homer	DDTYNGTTAN	1e-5	-1.232e+01	0.0000	2023.0	13.77%	4250.2	12.54%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-5	-1.228e+01	0.0000	805.0	5.48%	1588.5	4.69%
ERF8(AP2EREBP)/colamp-ERF8-DAP-Seq(GSE60143)/Homer	CGCCGYCATW	1e-5	-1.226e+01	0.0000	1441.0	9.81%	2968.5	8.76%
MYB81(MYB)/col-MYB81-DAP-Seq(GSE60143)/Homer	NWAACSGWTWNN	1e-5	-1.223e+01	0.0000	1612.0	10.97%	3344.2	9.86%
ERF10(AP2EREBP)/col-ERF10-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e-5	-1.219e+01	0.0000	1134.0	7.72%	2299.6	6.78%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-5	-1.218e+01	0.0000	2187.0	14.88%	4617.3	13.62%
MYB67(MYB)/col-MYB67-DAP-Seq(GSE60143)/Homer	YYYACCTAAC	1e-5	-1.217e+01	0.0000	1161.0	7.90%	2358.6	6.96%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e-5	-1.192e+01	0.0000	1664.0	11.33%	3464.2	10.22%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-5	-1.185e+01	0.0000	3731.0	25.39%	8087.4	23.85%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-5	-1.175e+01	0.0000	1952.0	13.29%	4104.3	12.11%
bHLH80(bHLH)/col-bHLH80-DAP-Seq(GSE60143)/Homer	NNNNDCAASTTGHNN	1e-5	-1.171e+01	0.0000	1211.0	8.24%	2474.5	7.30%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-5	-1.171e+01	0.0000	269.0	1.83%	472.5	1.39%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-5	-1.169e+01	0.0000	946.0	6.44%	1899.8	5.60%
WRKY15(WRKY)/col-WRKY15-DAP-Seq(GSE60143)/Homer	VGTTGACTWW	1e-5	-1.163e+01	0.0000	947.0	6.45%	1902.9	5.61%
ESE1(AP2EREBP)/col-ESE1-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e-4	-1.140e+01	0.0001	1478.0	10.06%	3064.7	9.04%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-4	-1.130e+01	0.0001	1970.0	13.41%	4153.6	12.25%
SeqBias: G/A bias	RRRRRRRRRR	1e-4	-1.118e+01	0.0001	14684.0	99.94%	33836.8	99.80%
RRTF1(AP2EREBP)/colamp-RRTF1-DAP-Seq(GSE60143)/Homer	CCGCCGCHATTT	1e-4	-1.110e+01	0.0001	253.0	1.72%	444.2	1.31%
At3g45610(C2C2dof)/col-At3g45610-DAP-Seq(GSE60143)/Homer	TWACTTTTTS	1e-4	-1.103e+01	0.0001	1895.0	12.90%	3992.3	11.78%
ASL18(LOBAS2)/colamp-ASL18-DAP-Seq(GSE60143)/Homer	CCGGAAAWTCMGGAR	1e-4	-1.103e+01	0.0001	2347.0	15.97%	4998.5	14.74%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-4	-1.087e+01	0.0001	1436.0	9.77%	2981.6	8.79%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e-4	-1.074e+01	0.0001	2661.0	18.11%	5707.3	16.83%
AT2G31460(REMB3)/col-AT2G31460-DAP-Seq(GSE60143)/Homer	WNWARWDGAAATGAT	1e-4	-1.066e+01	0.0001	413.0	2.81%	776.9	2.29%
RAP212(AP2EREBP)/col-RAP212-DAP-Seq(GSE60143)/Homer	CGCCGCCATTTT	1e-4	-1.060e+01	0.0001	1007.0	6.85%	2047.8	6.04%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e-4	-1.055e+01	0.0001	14679.0	99.90%	33820.2	99.75%
SRS7(SRS)/colamp-SRS7-DAP-Seq(GSE60143)/Homer	HATAGGTTTH	1e-4	-1.054e+01	0.0001	4178.0	28.44%	9135.4	26.95%
ERF13(AP2EREBP)/colamp-ERF13-DAP-Seq(GSE60143)/Homer	TYAGCCGCCATT	1e-4	-1.047e+01	0.0001	1619.0	11.02%	3392.5	10.01%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-4	-1.009e+01	0.0002	297.0	2.02%	542.0	1.60%
CBF1(AP2EREBP)/colamp-CBF1-DAP-Seq(GSE60143)/Homer	YRCCGACATN	1e-4	-1.008e+01	0.0002	601.0	4.09%	1179.1	3.48%
ESE3(AP2EREBP)/col-ESE3-DAP-Seq(GSE60143)/Homer	GACGGTGG	1e-4	-1.004e+01	0.0002	1883.0	12.82%	3986.2	11.76%
ERF5(AP2EREBP)/colamp-ERF5-DAP-Seq(GSE60143)/Homer	DCMGCCGCCA	1e-4	-9.847e+00	0.0003	785.0	5.34%	1577.0	4.65%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-4	-9.759e+00	0.0003	2408.0	16.39%	5164.8	15.23%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e-4	-9.729e+00	0.0003	136.0	0.93%	221.3	0.65%
AT5G23930(mTERF)/col-AT5G23930-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e-4	-9.679e+00	0.0003	3096.0	21.07%	6712.3	19.80%
bHLH122(bHLH)/col100-bHLH122-DAP-Seq(GSE60143)/Homer	NDDCAASTTGHHNWW	1e-4	-9.675e+00	0.0003	1015.0	6.91%	2079.9	6.13%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-4	-9.636e+00	0.0003	168.0	1.14%	284.0	0.84%
WRKY33(WRKY)/col-WRKY33-DAP-Seq(GSE60143)/Homer	CGTTGACYAW	1e-4	-9.629e+00	0.0003	734.0	5.00%	1471.0	4.34%
AGL15(MADS)/col-AGL15-DAP-Seq(GSE60143)/Homer	TTTCCHWATWDGGAA	1e-4	-9.588e+00	0.0003	182.0	1.24%	312.7	0.92%
AtHB32(ZFHD)/col200-AtHB32-DAP-Seq(GSE60143)/Homer	CGAATTAT	1e-4	-9.565e+00	0.0003	1272.0	8.66%	2644.9	7.80%
DREB2(AP2EREBP)/col-DREB2-DAP-Seq(GSE60143)/Homer	TMACCGACATWA	1e-4	-9.564e+00	0.0003	436.0	2.97%	835.4	2.46%
AT1G71450(AP2EREBP)/col-AT1G71450-DAP-Seq(GSE60143)/Homer	DHDWTGTCGGTG	1e-4	-9.512e+00	0.0003	1836.0	12.50%	3893.2	11.48%
WRKY55(WRKY)/col-WRKY55-DAP-Seq(GSE60143)/Homer	NCGTTGACTT	1e-4	-9.437e+00	0.0004	1117.0	7.60%	2306.7	6.80%
MYB61(MYB)/colamp-MYB61-DAP-Seq(GSE60143)/Homer	HCYACCTACC	1e-4	-9.437e+00	0.0004	1842.0	12.54%	3908.7	11.53%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-4	-9.379e+00	0.0004	237.0	1.61%	424.3	1.25%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e-4	-9.354e+00	0.0004	11.0	0.07%	6.5	0.02%
AT2G38300(G2like)/col-AT2G38300-DAP-Seq(GSE60143)/Homer	ADRGAATGTT	1e-4	-9.289e+00	0.0004	1638.0	11.15%	3458.5	10.20%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e-4	-9.222e+00	0.0004	294.0	2.00%	542.0	1.60%
ATHB13(Homeobox)/col-ATHB13-DAP-Seq(GSE60143)/Homer	CAATAATT	1e-3	-9.191e+00	0.0005	1167.0	7.94%	2420.9	7.14%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e-3	-9.175e+00	0.0005	898.0	6.11%	1832.8	5.41%
MYB98(MYB)/col-MYB98-DAP-Seq(GSE60143)/Homer	NWDCCGTTAC	1e-3	-9.134e+00	0.0005	282.0	1.92%	518.7	1.53%
At2g41835(C2H2)/col-At2g41835-DAP-Seq(GSE60143)/Homer	TTTGAAAA	1e-3	-9.081e+00	0.0005	653.0	4.44%	1303.3	3.84%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-3	-8.873e+00	0.0006	888.0	6.04%	1816.0	5.36%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-3	-8.857e+00	0.0006	613.0	4.17%	1220.8	3.60%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-3	-8.806e+00	0.0006	228.0	1.55%	410.3	1.21%
AT1G76880(Trihelix)/col-AT1G76880-DAP-Seq(GSE60143)/Homer	ACGGTAAAAW	1e-3	-8.774e+00	0.0007	396.0	2.70%	759.0	2.24%
MYB30(MYB)/colamp-MYB30-DAP-Seq(GSE60143)/Homer	AGGTAGTTGG	1e-3	-8.737e+00	0.0007	1474.0	10.03%	3107.0	9.16%
PUCHI(AP2EREBP)/colamp-PUCHI-DAP-Seq(GSE60143)/Homer	GCGCCGTY	1e-3	-8.665e+00	0.0007	1159.0	7.89%	2412.8	7.12%
SPL9(SBP)/colamp-SPL9-DAP-Seq(GSE60143)/Homer	BTGTACTT	1e-3	-8.600e+00	0.0008	2296.0	15.63%	4942.2	14.58%
AT2G40260(G2like)/colamp-AT2G40260-DAP-Seq(GSE60143)/Homer	WAAAYATTCTTT	1e-3	-8.560e+00	0.0008	1925.0	13.10%	4113.4	12.13%
SeqBias: GA-repeat	GAGAGAGAGA	1e-3	-8.409e+00	0.0009	9297.0	63.28%	20975.6	61.87%
SPL1(SBP)/colamp-SPL1-DAP-Seq(GSE60143)/Homer	HYGTACDTWH	1e-3	-8.391e+00	0.0010	1685.0	11.47%	3582.7	10.57%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-3	-8.325e+00	0.0010	1250.0	8.51%	2619.7	7.73%
AT1G12630(AP2EREBP)/colamp-AT1G12630-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e-3	-8.322e+00	0.0010	487.0	3.31%	957.3	2.82%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e-3	-8.125e+00	0.0012	111.0	0.76%	181.6	0.54%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-3	-8.069e+00	0.0013	1736.0	11.82%	3703.1	10.92%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-3	-8.032e+00	0.0013	921.0	6.27%	1901.9	5.61%
MYB107(MYB)/col-MYB107-DAP-Seq(GSE60143)/Homer	RGTWGGTRRR	1e-3	-8.004e+00	0.0014	2016.0	13.72%	4330.1	12.77%
At1g36060(AP2EREBP)/colamp-At1g36060-DAP-Seq(GSE60143)/Homer	NNWWKGTCGGTG	1e-3	-7.908e+00	0.0015	669.0	4.55%	1354.3	3.99%
MYB3R4(MYB)/col-MYB3R4-DAP-Seq(GSE60143)/Homer	AWWTAACCGTTR	1e-3	-7.905e+00	0.0015	146.0	0.99%	251.5	0.74%
ERF104(AP2EREBP)/col-ERF104-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e-3	-7.842e+00	0.0016	1769.0	12.04%	3782.4	11.16%
CEJ1(AP2EREBP)/col-CEJ1-DAP-Seq(GSE60143)/Homer	WWTGTCGGTG	1e-3	-7.840e+00	0.0016	966.0	6.57%	2003.8	5.91%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-3	-7.805e+00	0.0016	1248.0	8.49%	2625.8	7.74%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e-3	-7.789e+00	0.0016	2064.0	14.05%	4443.9	13.11%
MYB41(MYB)/col-MYB41-DAP-Seq(GSE60143)/Homer	BYTYACCTAA	1e-3	-7.765e+00	0.0017	488.0	3.32%	966.1	2.85%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-3	-7.764e+00	0.0017	371.0	2.53%	717.4	2.12%
MYB93(MYB)/colamp-MYB93-DAP-Seq(GSE60143)/Homer	GGTAGGTGRD	1e-3	-7.742e+00	0.0017	1418.0	9.65%	3003.2	8.86%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-3	-7.734e+00	0.0017	1160.0	7.89%	2432.5	7.17%
REM19(REM)/colamp-REM19-DAP-Seq(GSE60143)/Homer	AAAAAAAA	1e-3	-7.695e+00	0.0018	337.0	2.29%	646.5	1.91%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e-3	-7.681e+00	0.0018	4257.0	28.97%	9405.4	27.74%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e-3	-7.676e+00	0.0018	846.0	5.76%	1743.7	5.14%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-3	-7.533e+00	0.0021	375.0	2.55%	728.1	2.15%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-3	-7.516e+00	0.0021	547.0	3.72%	1096.8	3.24%
AGL63(MADS)/col-AGL63-DAP-Seq(GSE60143)/Homer	TTCCAAWWWTGG	1e-3	-7.486e+00	0.0021	979.0	6.66%	2038.9	6.01%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-3	-7.448e+00	0.0022	904.0	6.15%	1874.1	5.53%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-3	-7.446e+00	0.0022	809.0	5.51%	1666.9	4.92%
GATA4(C2C2gata)/col-GATA4-DAP-Seq(GSE60143)/Homer	DDWTYAGATCTR	1e-3	-7.438e+00	0.0022	737.0	5.02%	1509.6	4.45%
M1BP(Zf)/S2R+-M1BP-ChIP-Seq(GSE49842)/Homer	CAGTGTGACCGT	1e-3	-7.410e+00	0.0023	328.0	2.23%	630.9	1.86%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-3	-7.390e+00	0.0023	222.0	1.51%	409.0	1.21%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-3	-7.379e+00	0.0023	984.0	6.70%	2051.4	6.05%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-3	-7.361e+00	0.0024	1389.0	9.45%	2947.6	8.69%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-3	-7.287e+00	0.0025	87.0	0.59%	139.8	0.41%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e-3	-7.269e+00	0.0026	2563.0	17.44%	5580.0	16.46%
MYB92(MYB)/colamp-MYB92-DAP-Seq(GSE60143)/Homer	GGTAGGTR	1e-3	-7.249e+00	0.0026	1305.0	8.88%	2763.7	8.15%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-3	-7.210e+00	0.0027	2124.0	14.46%	4593.0	13.55%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-3	-7.187e+00	0.0027	885.0	6.02%	1837.7	5.42%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-3	-7.174e+00	0.0028	1247.0	8.49%	2636.0	7.78%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-3	-7.166e+00	0.0028	2912.0	19.82%	6371.0	18.79%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-3	-7.154e+00	0.0028	809.0	5.51%	1671.4	4.93%
ATHB6(Homeobox)/col-ATHB6-DAP-Seq(GSE60143)/Homer	AATGATTG	1e-3	-7.130e+00	0.0029	1261.0	8.58%	2668.4	7.87%
At4g16750(AP2EREBP)/col-At4g16750-DAP-Seq(GSE60143)/Homer	HACCGACAHA	1e-3	-7.129e+00	0.0029	641.0	4.36%	1305.7	3.85%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-3	-7.110e+00	0.0029	256.0	1.74%	482.0	1.42%
At1g22810(AP2EREBP)/colamp-At1g22810-DAP-Seq(GSE60143)/Homer	BCACCGACANNN	1e-3	-7.073e+00	0.0030	426.0	2.90%	842.8	2.49%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-3	-7.007e+00	0.0032	398.0	2.71%	783.7	2.31%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-3	-6.939e+00	0.0034	3623.0	24.66%	7990.0	23.57%
SVP(MADS)/col-SVP-DAP-Seq(GSE60143)/Homer	ANTTWCCHAATTTGG	1e-3	-6.938e+00	0.0034	624.0	4.25%	1271.0	3.75%
AT1G76870(Trihelix)/col-AT1G76870-DAP-Seq(GSE60143)/Homer	AAAACCRGWW	1e-3	-6.937e+00	0.0034	476.0	3.24%	951.8	2.81%
At5g08750(C3H)/col-At5g08750-DAP-Seq(GSE60143)/Homer	NWDTTGCGGCTR	1e-3	-6.934e+00	0.0034	521.0	3.55%	1048.1	3.09%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-2	-6.888e+00	0.0035	693.0	4.72%	1422.3	4.20%
WRKY24(WRKY)/colamp-WRKY24-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e-2	-6.865e+00	0.0036	793.0	5.40%	1642.0	4.84%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-2	-6.852e+00	0.0036	959.0	6.53%	2006.1	5.92%
ERF73(AP2EREBP)/col-ERF73-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e-2	-6.850e+00	0.0036	1233.0	8.39%	2613.0	7.71%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-2	-6.844e+00	0.0036	1093.0	7.44%	2302.8	6.79%
AGL6(MADS)/col-AGL6-DAP-Seq(GSE60143)/Homer	TTWCCWWAWWDGGWA	1e-2	-6.828e+00	0.0037	139.0	0.95%	245.0	0.72%
SPL11(SBP)/col100-SPL11-DAP-Seq(GSE60143)/Homer	YTGTACTTBH	1e-2	-6.813e+00	0.0037	607.0	4.13%	1236.0	3.65%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-2	-6.765e+00	0.0039	2342.0	15.94%	5096.1	15.03%
TSO1(CPP)/col-TSO1-DAP-Seq(GSE60143)/Homer	RAATTTRAAW	1e-2	-6.762e+00	0.0039	162.0	1.10%	291.6	0.86%
At1g13300(G2like)/col-At1g13300-DAP-Seq(GSE60143)/Homer	GAATCTWAGATTCYN	1e-2	-6.761e+00	0.0039	16.0	0.11%	15.6	0.05%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-2	-6.758e+00	0.0039	383.0	2.61%	754.8	2.23%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-2	-6.696e+00	0.0041	145.0	0.99%	257.2	0.76%
ERF1(AP2EREBP)/colamp-ERF1-DAP-Seq(GSE60143)/Homer	GGCGGCTR	1e-2	-6.632e+00	0.0044	1105.0	7.52%	2333.2	6.88%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-2	-6.604e+00	0.0045	945.0	6.43%	1980.8	5.84%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e-2	-6.571e+00	0.0046	631.0	4.29%	1293.0	3.81%
MYB3R1(MYB)/col-MYB3R1-DAP-Seq(GSE60143)/Homer	WWDTDACCGTTR	1e-2	-6.462e+00	0.0051	243.0	1.65%	461.1	1.36%
AtGRF6(GRF)/col-AtGRF6-DAP-Seq(GSE60143)/Homer	NTGTCAGADNNNNNN	1e-2	-6.450e+00	0.0051	1406.0	9.57%	3006.8	8.87%
WRKY6(WRKY)/colamp-WRKY6-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWD	1e-2	-6.409e+00	0.0053	792.0	5.39%	1647.3	4.86%
ZIM(C2C2gata)/col-ZIM-DAP-Seq(GSE60143)/Homer	ATCSRACGGTYRAGA	1e-2	-6.320e+00	0.0058	8.0	0.05%	5.1	0.02%
AT5G45580(G2like)/colamp-AT5G45580-DAP-Seq(GSE60143)/Homer	ADRGAATCTH	1e-2	-6.278e+00	0.0061	1924.0	13.09%	4170.0	12.30%
AT3G25990(Trihelix)/colamp-AT3G25990-DAP-Seq(GSE60143)/Homer	TTAACCATAG	1e-2	-6.252e+00	0.0062	762.0	5.19%	1584.8	4.67%
NAM(NAC)/col-NAM-DAP-Seq(GSE60143)/Homer	RGTTRCGTRW	1e-2	-6.245e+00	0.0062	1085.0	7.38%	2297.5	6.78%
ANAC045(NAC)/col-ANAC045-DAP-Seq(GSE60143)/Homer	DNCKTVNNNNNNAMG	1e-2	-6.219e+00	0.0064	2464.0	16.77%	5389.0	15.90%
ERF2(AP2EREBP)/colamp-ERF2-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e-2	-6.186e+00	0.0065	1264.0	8.60%	2696.4	7.95%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-2	-6.134e+00	0.0069	976.0	6.64%	2059.0	6.07%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-2	-6.107e+00	0.0070	633.0	4.31%	1304.2	3.85%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-2	-6.106e+00	0.0070	178.0	1.21%	329.8	0.97%
LMI1(HB)/colamp-LMI1-DAP-Seq(GSE60143)/Homer	AATTATTG	1e-2	-6.103e+00	0.0070	743.0	5.06%	1545.8	4.56%
ATHB5(HB)/colamp-ATHB5-DAP-Seq(GSE60143)/Homer	AATGATTG	1e-2	-6.036e+00	0.0075	938.0	6.38%	1976.2	5.83%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e-2	-6.033e+00	0.0075	1863.0	12.68%	4040.5	11.92%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-2	-6.031e+00	0.0075	422.0	2.87%	847.2	2.50%
bHLH10(bHLH)/colamp-bHLH10-DAP-Seq(GSE60143)/Homer	YACCGACA	1e-2	-5.937e+00	0.0082	241.0	1.64%	462.7	1.36%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-2	-5.919e+00	0.0083	917.0	6.24%	1933.0	5.70%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-2	-5.852e+00	0.0088	1149.0	7.82%	2448.5	7.22%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e-2	-5.813e+00	0.0092	1185.0	8.07%	2529.6	7.46%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e-2	-5.748e+00	0.0097	1382.0	9.41%	2971.0	8.76%
CBF4(AP2EREBP)/colamp-CBF4-DAP-Seq(GSE60143)/Homer	NRCCGACDWNNNNNN	1e-2	-5.718e+00	0.0100	554.0	3.77%	1138.4	3.36%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e-2	-5.713e+00	0.0100	629.0	4.28%	1302.8	3.84%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e-2	-5.708e+00	0.0100	264.0	1.80%	513.2	1.51%
At4g31060(AP2EREBP)/colamp-At4g31060-DAP-Seq(GSE60143)/Homer	CACCGACAAW	1e-2	-5.664e+00	0.0105	336.0	2.29%	667.5	1.97%
LBD13(LOBAS2)/colamp-LBD13-DAP-Seq(GSE60143)/Homer	KCCGTNWTTTBCGGC	1e-2	-5.633e+00	0.0107	1050.0	7.15%	2233.6	6.59%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-2	-5.607e+00	0.0110	1547.0	10.53%	3343.6	9.86%
SeqBias: CG-repeat	CGCGCGCGCG	1e-2	-5.599e+00	0.0110	2975.0	20.25%	6566.3	19.37%
WRKY27(WRKY)/colamp-WRKY27-DAP-Seq(GSE60143)/Homer	NHGTTGACYTWD	1e-2	-5.485e+00	0.0123	822.0	5.59%	1731.6	5.11%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-2	-5.469e+00	0.0125	537.0	3.65%	1105.5	3.26%
AT1G49560(G2like)/colamp-AT1G49560-DAP-Seq(GSE60143)/Homer	GAWTCTNWDA	1e-2	-5.316e+00	0.0145	1628.0	11.08%	3533.2	10.42%
ERF3(AP2EREBP)/colamp-ERF3-DAP-Seq(GSE60143)/Homer	ATGGCGGCGG	1e-2	-5.295e+00	0.0148	997.0	6.79%	2123.9	6.26%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-2	-5.257e+00	0.0153	88.0	0.60%	152.6	0.45%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e-2	-5.196e+00	0.0162	355.0	2.42%	714.9	2.11%
TINY(AP2EREBP)/col-TINY-DAP-Seq(GSE60143)/Homer	NNCACCGACA	1e-2	-5.180e+00	0.0164	215.0	1.46%	415.3	1.23%
AT3G09735(S1Falike)/col-AT3G09735-DAP-Seq(GSE60143)/Homer	TTCTAGAANMTTCTA	1e-2	-5.129e+00	0.0172	517.0	3.52%	1067.1	3.15%
ATHB53(HB)/col-ATHB53-DAP-Seq(GSE60143)/Homer	CAATAATT	1e-2	-5.019e+00	0.0192	523.0	3.56%	1082.3	3.19%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-2	-5.016e+00	0.0192	279.0	1.90%	553.5	1.63%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e-2	-4.977e+00	0.0199	7.0	0.05%	5.5	0.02%
TGA10(bZIP)/colamp-TGA10-DAP-Seq(GSE60143)/Homer	ATGACGTC	1e-2	-4.939e+00	0.0206	521.0	3.55%	1079.1	3.18%
AT4G37180(G2like)/col-AT4G37180-DAP-Seq(GSE60143)/Homer	AGAATCTTNN	1e-2	-4.912e+00	0.0211	1478.0	10.06%	3208.5	9.46%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e-2	-4.896e+00	0.0213	639.0	4.35%	1339.6	3.95%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-2	-4.848e+00	0.0223	759.0	5.17%	1605.1	4.73%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-2	-4.818e+00	0.0229	704.0	4.79%	1484.2	4.38%
HSF3(HSF)/colamp-HSF3-DAP-Seq(GSE60143)/Homer	NTTCTAGAAKCTTCT	1e-2	-4.700e+00	0.0257	1163.0	7.92%	2508.5	7.40%
EMB1789(C3H)/col-EMB1789-DAP-Seq(GSE60143)/Homer	TWTTTACCGYND	1e-2	-4.682e+00	0.0261	411.0	2.80%	844.0	2.49%
AT3G60490(AP2EREBP)/colamp-AT3G60490-DAP-Seq(GSE60143)/Homer	NNRCCGACANNNNNN	1e-2	-4.669e+00	0.0264	234.0	1.59%	461.8	1.36%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-2	-4.639e+00	0.0271	738.0	5.02%	1563.2	4.61%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-2	-4.627e+00	0.0273	1044.0	7.11%	2244.0	6.62%
CBF3(AP2EREBP)/colamp-CBF3-DAP-Seq(GSE60143)/Homer	YNRCCGACATNN	1e-1	-4.595e+00	0.0282	392.0	2.67%	803.6	2.37%
WUS1(Homeobox)/colamp-WUS1-DAP-Seq(GSE60143)/Homer	CAWTCATTCA	1e-1	-4.519e+00	0.0303	424.0	2.89%	874.3	2.58%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e-1	-4.496e+00	0.0309	126.0	0.86%	235.9	0.70%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-1	-4.483e+00	0.0312	985.0	6.70%	2116.3	6.24%
WRKY3(WRKY)/col-WRKY3-DAP-Seq(GSE60143)/Homer	NCKTTGACYDDN	1e-1	-4.450e+00	0.0321	557.0	3.79%	1167.5	3.44%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-1	-4.441e+00	0.0323	889.0	6.05%	1903.4	5.61%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-1	-4.437e+00	0.0324	190.0	1.29%	371.0	1.09%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-1	-4.425e+00	0.0327	360.0	2.45%	736.4	2.17%
NAP(NAC)/col-NAP-DAP-Seq(GSE60143)/Homer	ARGTTACGTRTN	1e-1	-4.335e+00	0.0356	789.0	5.37%	1683.8	4.97%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e-1	-4.308e+00	0.0365	103.0	0.70%	189.1	0.56%
ATHB40(HB)/col-ATHB40-DAP-Seq(GSE60143)/Homer	HCAATWATTG	1e-1	-4.281e+00	0.0374	819.0	5.57%	1751.2	5.17%
MYB17(MYB)/colamp-MYB17-DAP-Seq(GSE60143)/Homer	GGTAGGTGRG	1e-1	-4.258e+00	0.0382	754.0	5.13%	1607.0	4.74%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-1	-4.201e+00	0.0403	151.0	1.03%	291.0	0.86%
AT1G72740(MYBrelated)/colamp-AT1G72740-DAP-Seq(GSE60143)/Homer	NNWWAMCCTAAHWNN	1e-1	-4.188e+00	0.0407	1162.0	7.91%	2520.6	7.43%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-1	-4.179e+00	0.0409	50.0	0.34%	83.1	0.25%
AT3G16280(AP2EREBP)/colamp-AT3G16280-DAP-Seq(GSE60143)/Homer	HCACCGACAHHDHHN	1e-1	-4.173e+00	0.0410	260.0	1.77%	524.0	1.55%
At1g19210(AP2EREBP)/colamp-At1g19210-DAP-Seq(GSE60143)/Homer	HCACCGACCAHN	1e-1	-4.162e+00	0.0414	1406.0	9.57%	3069.3	9.05%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-1	-4.152e+00	0.0417	277.0	1.89%	560.1	1.65%
NST1(NAC)/colamp-NST1-DAP-Seq(GSE60143)/Homer	WRCTTRWWNWWYAAG	1e-1	-4.143e+00	0.0419	835.0	5.68%	1790.8	5.28%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-1	-4.113e+00	0.0431	366.0	2.49%	754.8	2.23%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-1	-4.055e+00	0.0455	32.0	0.22%	49.9	0.15%
NLP7(RWPRK)/col-NLP7-DAP-Seq(GSE60143)/Homer	TGRCCYTTCR	1e-1	-4.023e+00	0.0469	2784.0	18.95%	6195.9	18.28%
TRP2(MYBrelated)/colamp-TRP2-DAP-Seq(GSE60143)/Homer	TAAACCCT	1e-1	-4.022e+00	0.0469	214.0	1.46%	426.5	1.26%
WRKY22(WRKY)/colamp-WRKY22-DAP-Seq(GSE60143)/Homer	WWAAAGTCAACK	1e-1	-4.008e+00	0.0473	510.0	3.47%	1072.8	3.16%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e-1	-4.000e+00	0.0476	198.0	1.35%	393.0	1.16%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e-1	-3.936e+00	0.0506	444.0	3.02%	928.5	2.74%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e-1	-3.916e+00	0.0514	198.0	1.35%	393.4	1.16%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e-1	-3.892e+00	0.0525	98.0	0.67%	182.4	0.54%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-1	-3.888e+00	0.0526	1191.0	8.11%	2594.2	7.65%
DEAR3(AP2EREBP)/colamp-DEAR3-DAP-Seq(GSE60143)/Homer	BCACCGACAWNNNNN	1e-1	-3.858e+00	0.0541	264.0	1.80%	536.2	1.58%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e-1	-3.843e+00	0.0547	162.0	1.10%	317.5	0.94%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-1	-3.835e+00	0.0550	205.0	1.40%	409.7	1.21%
TGA2(bZIP)/colamp-TGA2-DAP-Seq(GSE60143)/Homer	ACGTCAYCHH	1e-1	-3.826e+00	0.0554	507.0	3.45%	1070.0	3.16%
TGA5(bZIP)/col-TGA5-DAP-Seq(GSE60143)/Homer	NNGATGACGTCATCN	1e-1	-3.815e+00	0.0558	66.0	0.45%	117.1	0.35%
AGL16(MADS)/col-AGL16-DAP-Seq(GSE60143)/Homer	TWCCHWATWDGGAAA	1e-1	-3.744e+00	0.0598	95.0	0.65%	177.7	0.52%
PLT1(AP2EREBP)/colamp-PLT1-DAP-Seq(GSE60143)/Homer	GCACGAWTYCCGAGG	1e-1	-3.728e+00	0.0606	77.0	0.52%	140.3	0.41%
WRKY31(WRKY)/colamp-WRKY31-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWK	1e-1	-3.713e+00	0.0613	621.0	4.23%	1324.6	3.91%
DEAR5(AP2EREBP)/col-DEAR5-DAP-Seq(GSE60143)/Homer	NDWTGTCGGTGRWDN	1e-1	-3.693e+00	0.0624	123.0	0.84%	236.0	0.70%
SMB(NAC)/colamp-SMB-DAP-Seq(GSE60143)/Homer	CTTVNNNNDBAAGHW	1e-1	-3.689e+00	0.0624	925.0	6.30%	2003.4	5.91%
DEL1(E2FDP)/colamp-DEL1-DAP-Seq(GSE60143)/Homer	TTCCCGCCAA	1e-1	-3.670e+00	0.0635	8.0	0.05%	8.7	0.03%
CELF2(RRM)/JSL1-CELF2-CLIP-Seq(GSE71264)/Homer	RGTGTCAG	1e-1	-3.636e+00	0.0655	426.0	2.90%	895.0	2.64%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e-1	-3.609e+00	0.0671	1043.0	7.10%	2270.6	6.70%
HDG1(Homeobox)/col100-HDG1-DAP-Seq(GSE60143)/Homer	DDYAATTAATGH	1e-1	-3.596e+00	0.0678	550.0	3.74%	1169.5	3.45%
ANAC070(NAC)/colamp-ANAC070-DAP-Seq(GSE60143)/Homer	CTTRHDNHNBAAGHW	1e-1	-3.594e+00	0.0678	1118.0	7.61%	2439.1	7.19%
ANAC042(NAC)/col-ANAC042-DAP-Seq(GSE60143)/Homer	CGTNDHNDHNACGKY	1e-1	-3.579e+00	0.0686	726.0	4.94%	1561.3	4.61%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e-1	-3.562e+00	0.0696	18.0	0.12%	25.4	0.07%
TBP3(MYBrelated)/col-TBP3-DAP-Seq(GSE60143)/Homer	VYTAGGGCAN	1e-1	-3.556e+00	0.0698	926.0	6.30%	2009.3	5.93%
ARF16(ARF)/col-ARF16-DAP-Seq(GSE60143)/Homer	ATTTTACGAT	1e-1	-3.523e+00	0.0720	126.0	0.86%	244.1	0.72%
MYB3R5(MYB)/col-MYB3R5-DAP-Seq(GSE60143)/Homer	THYAACGGTHAWAWT	1e-1	-3.519e+00	0.0721	66.0	0.45%	119.4	0.35%
TGA3(bZIP)/colamp-TGA3-DAP-Seq(GSE60143)/Homer	WTGATGACGTCATCW	1e-1	-3.479e+00	0.0748	41.0	0.28%	69.6	0.21%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-1	-3.474e+00	0.0750	266.0	1.81%	546.7	1.61%
At3g24120(G2like)/col-At3g24120-DAP-Seq(GSE60143)/Homer	NWWAGMATMW	1e-1	-3.470e+00	0.0751	4163.0	28.33%	9371.5	27.64%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-1	-3.462e+00	0.0755	350.0	2.38%	730.4	2.15%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-1	-3.450e+00	0.0762	567.0	3.86%	1210.7	3.57%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-1	-3.419e+00	0.0785	2286.0	15.56%	5089.3	15.01%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e-1	-3.406e+00	0.0793	438.0	2.98%	925.9	2.73%
At1g76110(ARID)/colamp-At1g76110-DAP-Seq(GSE60143)/Homer	ATTTAATG	1e-1	-3.389e+00	0.0804	675.0	4.59%	1453.0	4.29%
MYB118(MYB)/colamp-MYB118-DAP-Seq(GSE60143)/Homer	TAWCCGTTAC	1e-1	-3.386e+00	0.0804	275.0	1.87%	567.6	1.67%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-1	-3.318e+00	0.0859	23.0	0.16%	35.4	0.10%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-1	-3.300e+00	0.0872	51.0	0.35%	90.4	0.27%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-1	-3.296e+00	0.0873	160.0	1.09%	319.9	0.94%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-1	-3.253e+00	0.0909	2731.0	18.59%	6110.2	18.02%
MYB113(MYB)/col-MYB113-DAP-Seq(GSE60143)/Homer	HNDAWTCMGTTAYWN	1e-1	-3.251e+00	0.0909	488.0	3.32%	1039.8	3.07%
CDM1(C3H)/colamp-CDM1-DAP-Seq(GSE60143)/Homer	CCGAWAWTWTCGGAN	1e-1	-3.205e+00	0.0949	98.0	0.67%	188.2	0.56%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e-1	-3.150e+00	0.1000	32.0	0.22%	53.3	0.16%
At5g47390(MYBrelated)/col-At5g47390-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e-1	-3.130e+00	0.1018	1223.0	8.32%	2691.6	7.94%
AGL25(MADS)/colamp-AGL25-DAP-Seq(GSE60143)/Homer	TTTCCATWTWTGGAA	1e-1	-3.100e+00	0.1047	65.0	0.44%	120.9	0.36%
LOB(LOBAS2)/col-LOB-DAP-Seq(GSE60143)/Homer	CGCCGKAWWTTHCGS	1e-1	-3.097e+00	0.1047	266.0	1.81%	552.1	1.63%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-1	-3.027e+00	0.1119	200.0	1.36%	409.4	1.21%
MYB119(MYB)/colamp-MYB119-DAP-Seq(GSE60143)/Homer	YRACCGTTACDD	1e-1	-3.025e+00	0.1119	265.0	1.80%	551.2	1.63%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e-1	-3.006e+00	0.1137	26.0	0.18%	42.7	0.13%
GATA6(C2C2gata)/col200-GATA6-DAP-Seq(GSE60143)/Homer	TAGATCTARAHH	1e-1	-3.000e+00	0.1142	129.0	0.88%	256.2	0.76%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e-1	-2.965e+00	0.1179	391.0	2.66%	830.3	2.45%
At1g68670(G2like)/colamp-At1g68670-DAP-Seq(GSE60143)/Homer	WNWWHNRAAGATTCT	1e-1	-2.964e+00	0.1179	521.0	3.55%	1119.6	3.30%
At1g77640(AP2EREBP)/col-At1g77640-DAP-Seq(GSE60143)/Homer	TGTCGGTGGA	1e-1	-2.950e+00	0.1191	216.0	1.47%	445.6	1.31%
TGA9(bZIP)/colamp-TGA9-DAP-Seq(GSE60143)/Homer	VTGACGTC	1e-1	-2.892e+00	0.1260	1074.0	7.31%	2363.9	6.97%
GRF9(GRF)/colamp-GRF9-DAP-Seq(GSE60143)/Homer	NWCTGACANNNNNNN	1e-1	-2.863e+00	0.1293	1074.0	7.31%	2364.8	6.97%
SHN3(AP2EREBP)/col-SHN3-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e-1	-2.846e+00	0.1312	640.0	4.36%	1388.3	4.10%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-1	-2.792e+00	0.1382	1006.0	6.85%	2213.5	6.53%
MYB56(MYB)/colamp-MYB56-DAP-Seq(GSE60143)/Homer	HTAACGRMHY	1e-1	-2.786e+00	0.1386	848.0	5.77%	1857.4	5.48%
AT5G61620(MYBrelated)/colamp-AT5G61620-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e-1	-2.732e+00	0.1461	1401.0	9.54%	3109.5	9.17%
dof42(C2C2dof)/col-dof42-DAP-Seq(GSE60143)/Homer	AAAAAGGC	1e-1	-2.722e+00	0.1471	812.0	5.53%	1778.6	5.25%
AIL7(AP2EREBP)/colamp-AIL7-DAP-Seq(GSE60143)/Homer	KCACRAWTYYCGAGG	1e-1	-2.686e+00	0.1522	500.0	3.40%	1079.2	3.18%
At3g12730(G2like)/colamp-At3g12730-DAP-Seq(GSE60143)/Homer	AAGATTCT	1e-1	-2.664e+00	0.1551	1719.0	11.70%	3834.9	11.31%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e-1	-2.663e+00	0.1551	79.0	0.54%	153.9	0.45%
REM16(ABI3VP1)/col-REM16-DAP-Seq(GSE60143)/Homer	DTTTTTSCCGSMAAA	1e-1	-2.649e+00	0.1567	2.0	0.01%	1.5	0.00%
DREB26(AP2EREBP)/col-DREB26-DAP-Seq(GSE60143)/Homer	CCACCGACAH	1e-1	-2.642e+00	0.1575	276.0	1.88%	582.6	1.72%
TCP3(TCP)/colamp-TCP3-DAP-Seq(GSE60143)/Homer	WGTGGTCCCAAHWWW	1e-1	-2.641e+00	0.1575	391.0	2.66%	837.5	2.47%
ERF38(AP2EREBP)/col-ERF38-DAP-Seq(GSE60143)/Homer	CACCGACA	1e-1	-2.621e+00	0.1600	389.0	2.65%	833.2	2.46%
ZML1(C2C2gata)/colamp-ZML1-DAP-Seq(GSE60143)/Homer	ATCWYRACCGTTSRW	1e-1	-2.610e+00	0.1614	8.0	0.05%	10.4	0.03%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-1	-2.587e+00	0.1648	217.0	1.48%	453.2	1.34%
CBF2(AP2EREBP)/colamp-CBF2-DAP-Seq(GSE60143)/Homer	YBRCCGACATNNNNN	1e-1	-2.558e+00	0.1693	356.0	2.42%	761.3	2.25%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-1	-2.530e+00	0.1737	736.0	5.01%	1613.8	4.76%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-1	-2.517e+00	0.1755	486.0	3.31%	1052.5	3.10%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-1	-2.496e+00	0.1788	704.0	4.79%	1542.6	4.55%
AT5G59990(C2C2COlike)/colamp-AT5G59990-DAP-Seq(GSE60143)/Homer	TCTCAACCGTTCATT	1e-1	-2.477e+00	0.1817	16.0	0.11%	25.1	0.07%
RKD2(RWPRK)/colamp-RKD2-DAP-Seq(GSE60143)/Homer	GACKTTTCRDCTTCC	1e-1	-2.474e+00	0.1819	725.0	4.93%	1590.7	4.69%
ANAC071(NAC)/col-ANAC071-DAP-Seq(GSE60143)/Homer	DNCKTNDNNNHNAAG	1e-1	-2.463e+00	0.1834	814.0	5.54%	1791.4	5.28%
ANAC046(NAC)/colamp-ANAC046-DAP-Seq(GSE60143)/Homer	ACACGYWAYC	1e-1	-2.435e+00	0.1883	1932.0	13.15%	4330.3	12.77%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e-1	-2.425e+00	0.1897	19.0	0.13%	31.3	0.09%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-1	-2.406e+00	0.1929	1584.0	10.78%	3539.3	10.44%
At2g01060(G2like)/colamp-At2g01060-DAP-Seq(GSE60143)/Homer	AGATKCBNWW	1e-1	-2.406e+00	0.1929	3797.0	25.84%	8597.9	25.36%
STOP1(C2H2)/colamp-STOP1-DAP-Seq(GSE60143)/Homer	DTATCTGGKGRAGGT	1e-1	-2.392e+00	0.1948	583.0	3.97%	1273.3	3.76%
LCL1(MYBrelated)/colamp-LCL1-DAP-Seq(GSE60143)/Homer	NAAAATATCTWHWWN	1e-1	-2.379e+00	0.1969	142.0	0.97%	292.7	0.86%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-1	-2.372e+00	0.1978	712.0	4.85%	1564.4	4.61%
MYB105(MYB)/colamp-MYB105-DAP-Seq(GSE60143)/Homer	RATWCCGTTA	1e-1	-2.365e+00	0.1986	596.0	4.06%	1303.5	3.84%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-1	-2.349e+00	0.2014	92.0	0.63%	184.9	0.55%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e-1	-2.343e+00	0.2022	374.0	2.55%	806.4	2.38%
GATA11(C2C2gata)/col-GATA11-DAP-Seq(GSE60143)/Homer	DDHYYAGATCTR	1e-1	-2.334e+00	0.2035	386.0	2.63%	833.7	2.46%
bHLH157(bHLH)/col-bHLH157-DAP-Seq(GSE60143)/Homer	KACACGTCTCTY	1e-1	-2.330e+00	0.2038	210.0	1.43%	442.8	1.31%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-1	-2.310e+00	0.2076	1823.0	12.41%	4088.6	12.06%
MYB27(MYB)/colamp-MYB27-DAP-Seq(GSE60143)/Homer	TACCTAACWT	1e-1	-2.305e+00	0.2082	168.0	1.14%	350.2	1.03%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-2.288e+00	0.2111	2578.0	17.55%	5813.1	17.15%
HSF6(HSF)/col-HSF6-DAP-Seq(GSE60143)/Homer	TTYTAGAAGCTTCTA	1e0	-2.283e+00	0.2117	253.0	1.72%	538.9	1.59%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-2.246e+00	0.2194	423.0	2.88%	918.1	2.71%
At4g01280(MYBrelated)/colamp-At4g01280-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-2.241e+00	0.2198	549.0	3.74%	1201.1	3.54%
AT1G44830(AP2EREBP)/col-AT1G44830-DAP-Seq(GSE60143)/Homer	NCCACCGACA	1e0	-2.199e+00	0.2287	372.0	2.53%	805.7	2.38%
GATA12(C2C2gata)/col-GATA12-DAP-Seq(GSE60143)/Homer	YAGATCTRAW	1e0	-2.191e+00	0.2301	555.0	3.78%	1216.3	3.59%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-2.186e+00	0.2307	80.0	0.54%	160.2	0.47%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-2.184e+00	0.2307	437.0	2.97%	951.3	2.81%
At3g09600(MYBrelated)/colamp-At3g09600-DAP-Seq(GSE60143)/Homer	AAAATATCTT	1e0	-2.183e+00	0.2307	445.0	3.03%	969.1	2.86%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e0	-2.180e+00	0.2307	86.0	0.59%	173.7	0.51%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-2.145e+00	0.2382	671.0	4.57%	1479.5	4.36%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e0	-2.134e+00	0.2403	5058.0	34.42%	11513.4	33.96%
VND6(NAC)/col-VND6-DAP-Seq(GSE60143)/Homer	DCTTNHTTTTYAMGY	1e0	-2.131e+00	0.2405	1110.0	7.55%	2474.0	7.30%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-2.121e+00	0.2425	760.0	5.17%	1681.6	4.96%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-2.066e+00	0.2555	90.0	0.61%	183.7	0.54%
HSFC1(HSF)/col-HSFC1-DAP-Seq(GSE60143)/Homer	HTTCTAGAADCTTCT	1e0	-2.061e+00	0.2564	255.0	1.74%	547.2	1.61%
At5g22890(C2H2)/col-At5g22890-DAP-Seq(GSE60143)/Homer	NSAGGTKWTATCTGD	1e0	-2.046e+00	0.2596	39.0	0.27%	74.9	0.22%
GATA1(C2C2gata)/colamp-GATA1-DAP-Seq(GSE60143)/Homer	DDWWYYAGATCTRRW	1e0	-2.030e+00	0.2633	325.0	2.21%	704.5	2.08%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-2.027e+00	0.2634	1907.0	12.98%	4295.8	12.67%
HAP3(CCAATHAP3)/col-HAP3-DAP-Seq(GSE60143)/Homer	TGATGGAW	1e0	-2.007e+00	0.2682	401.0	2.73%	875.7	2.58%
ANAC083(NAC)/col-ANAC083-DAP-Seq(GSE60143)/Homer	CKTRWNNNWYAMGTA	1e0	-2.003e+00	0.2687	656.0	4.46%	1450.2	4.28%
MYB40(MYB)/col-MYB40-DAP-Seq(GSE60143)/Homer	TGGTAGGTRARA	1e0	-1.998e+00	0.2696	404.0	2.75%	882.6	2.60%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-1.981e+00	0.2736	1144.0	7.79%	2558.4	7.55%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-1.972e+00	0.2754	58.0	0.39%	115.7	0.34%
AT5G56840(MYBrelated)/colamp-AT5G56840-DAP-Seq(GSE60143)/Homer	TGGATAAGGT	1e0	-1.957e+00	0.2789	1209.0	8.23%	2707.4	7.99%
ARF2(ARF)/col-ARF2-DAP-Seq(GSE60143)/Homer	TTGTCGGMWN	1e0	-1.954e+00	0.2790	3287.0	22.37%	7459.4	22.00%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	-1.946e+00	0.2810	3.0	0.02%	3.8	0.01%
MYB116(MYB)/colamp-MYB116-DAP-Seq(GSE60143)/Homer	AGTTAGGCAN	1e0	-1.928e+00	0.2853	763.0	5.19%	1695.5	5.00%
AGL13(MADS)/col-AGL13-DAP-Seq(GSE60143)/Homer	TWCCAWWTWTGGWAA	1e0	-1.918e+00	0.2876	47.0	0.32%	92.5	0.27%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	-1.909e+00	0.2896	7.0	0.05%	10.2	0.03%
BOS1(MYB)/col-BOS1-DAP-Seq(GSE60143)/Homer	NNRCCTAACT	1e0	-1.906e+00	0.2897	982.0	6.68%	2193.7	6.47%
MYB57(MYB)/col-MYB57-DAP-Seq(GSE60143)/Homer	TTACCTAACT	1e0	-1.891e+00	0.2935	487.0	3.31%	1072.1	3.16%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-1.858e+00	0.3027	336.0	2.29%	733.6	2.16%
ANAC094(NAC)/col-ANAC094-DAP-Seq(GSE60143)/Homer	DVCGTRNNNNNYACG	1e0	-1.850e+00	0.3045	327.0	2.23%	713.3	2.10%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-1.844e+00	0.3058	543.0	3.70%	1200.3	3.54%
ATHB7(Homeobox)/col-ATHB7-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-1.824e+00	0.3113	643.0	4.38%	1427.2	4.21%
At1g25550(G2like)/colamp-At1g25550-DAP-Seq(GSE60143)/Homer	NAGATTCY	1e0	-1.822e+00	0.3114	1332.0	9.07%	2994.9	8.83%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-1.802e+00	0.3170	1548.0	10.54%	3488.9	10.29%
GATA19(C2C2gata)/colamp-GATA19-DAP-Seq(GSE60143)/Homer	ATCSGATCVG	1e0	-1.783e+00	0.3222	52.0	0.35%	104.1	0.31%
DDF1(AP2EREBP)/col-DDF1-DAP-Seq(GSE60143)/Homer	GCCGACAT	1e0	-1.747e+00	0.3335	320.0	2.18%	701.0	2.07%
ANAC013(NAC)/col-ANAC013-DAP-Seq(GSE60143)/Homer	CTTGNNNNNCAAGNA	1e0	-1.744e+00	0.3338	434.0	2.95%	957.0	2.82%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.739e+00	0.3347	254.0	1.73%	552.5	1.63%
GATA20(C2C2gata)/colamp-GATA20-DAP-Seq(GSE60143)/Homer	TNGATCNDNM	1e0	-1.722e+00	0.3396	2079.0	14.15%	4707.5	13.89%
GATA14(C2C2gata)/col-GATA14-DAP-Seq(GSE60143)/Homer	AYCAGATCTG	1e0	-1.720e+00	0.3397	606.0	4.12%	1347.9	3.98%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-1.717e+00	0.3399	54.0	0.37%	109.5	0.32%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-1.716e+00	0.3399	107.0	0.73%	225.4	0.66%
ANAC016(NAC)/col-ANAC016-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAMG	1e0	-1.707e+00	0.3421	833.0	5.67%	1863.4	5.50%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-1.692e+00	0.3467	64.0	0.44%	131.9	0.39%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-1.690e+00	0.3467	863.0	5.87%	1932.8	5.70%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.673e+00	0.3519	375.0	2.55%	826.3	2.44%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-1.671e+00	0.3519	573.0	3.90%	1274.3	3.76%
ANAC079(NAC)/colamp-ANAC079-DAP-Seq(GSE60143)/Homer	TACACGCAACCT	1e0	-1.667e+00	0.3525	343.0	2.33%	754.3	2.22%
ATY19(MYB)/col-ATY19-DAP-Seq(GSE60143)/Homer	YYCACCWACCAT	1e0	-1.657e+00	0.3554	854.0	5.81%	1913.7	5.64%
VND1(NAC)/col-VND1-DAP-Seq(GSE60143)/Homer	CTTRWDNHWYAAGYW	1e0	-1.656e+00	0.3554	741.0	5.04%	1656.2	4.89%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-1.648e+00	0.3569	407.0	2.77%	899.2	2.65%
WRKY45(WRKY)/col-WRKY45-DAP-Seq(GSE60143)/Homer	HNNNKTTGACTWWNH	1e0	-1.622e+00	0.3658	334.0	2.27%	735.0	2.17%
FRS9(ND)/col-FRS9-DAP-Seq(GSE60143)/Homer	RGAGAGAGAAAG	1e0	-1.619e+00	0.3659	322.0	2.19%	708.9	2.09%
WRKY71(WRKY)/col-WRKY71-DAP-Seq(GSE60143)/Homer	CKTTGACYWW	1e0	-1.606e+00	0.3701	649.0	4.42%	1449.1	4.27%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-1.602e+00	0.3710	15.0	0.10%	27.2	0.08%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-1.593e+00	0.3733	52.0	0.35%	106.6	0.31%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.574e+00	0.3798	115.0	0.78%	245.8	0.73%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-1.568e+00	0.3813	128.0	0.87%	274.1	0.81%
At2g03500(G2like)/col-At2g03500-DAP-Seq(GSE60143)/Homer	WWAGAATATTCT	1e0	-1.563e+00	0.3825	204.0	1.39%	444.0	1.31%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-1.558e+00	0.3837	232.0	1.58%	507.6	1.50%
AT2G01818(PLATZ)/col-AT2G01818-DAP-Seq(GSE60143)/Homer	TCTAGAABSTTC	1e0	-1.554e+00	0.3846	199.0	1.35%	433.1	1.28%
At4g32800(AP2EREBP)/colamp-At4g32800-DAP-Seq(GSE60143)/Homer	DYCACCGACAHWWWH	1e0	-1.543e+00	0.3878	80.0	0.54%	168.8	0.50%
MYB3(MYB)/Arabidopsis-MYB3-ChIP-Seq(GSE80564)/Homer	GKTAGGTRGG	1e0	-1.519e+00	0.3964	2291.0	15.59%	5207.1	15.36%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-1.513e+00	0.3983	47.0	0.32%	96.0	0.28%
VND2(NAC)/col-VND2-DAP-Seq(GSE60143)/Homer	DNCKTNNNNNNNAAG	1e0	-1.509e+00	0.3991	908.0	6.18%	2043.9	6.03%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-1.496e+00	0.4033	46.0	0.31%	94.8	0.28%
ANAC038(NAC)/col-ANAC038-DAP-Seq(GSE60143)/Homer	ACACGTWAYC	1e0	-1.492e+00	0.4041	2175.0	14.80%	4943.5	14.58%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-1.458e+00	0.4174	149.0	1.01%	323.3	0.95%
HSFA6B(HSF)/colamp-HSFA6B-DAP-Seq(GSE60143)/Homer	NTTCTAGAANHTTCT	1e0	-1.457e+00	0.4174	612.0	4.17%	1371.7	4.05%
LBD2(LOBAS2)/colamp-LBD2-DAP-Seq(GSE60143)/Homer	TCCGAWTTTTTCGGN	1e0	-1.431e+00	0.4271	274.0	1.86%	605.5	1.79%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-1.410e+00	0.4353	702.0	4.78%	1579.0	4.66%
ANAC047(NAC)/colamp-ANAC047-DAP-Seq(GSE60143)/Homer	WACACGTAACTT	1e0	-1.408e+00	0.4354	601.0	4.09%	1348.4	3.98%
EPR1(MYBrelated)/colamp-EPR1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-1.392e+00	0.4406	353.0	2.40%	785.6	2.32%
LHY1(MYBrelated)/col-LHY1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-1.392e+00	0.4406	353.0	2.40%	785.6	2.32%
NAC2(NAC)/colamp-NAC2-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e0	-1.390e+00	0.4410	670.0	4.56%	1506.3	4.44%
MYB83(MYB)/colamp-MYB83-DAP-Seq(GSE60143)/Homer	CACCAACCWH	1e0	-1.388e+00	0.4410	1968.0	13.39%	4476.7	13.20%
ANAC053(NAC)/colamp-ANAC053-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e0	-1.368e+00	0.4488	519.0	3.53%	1163.2	3.43%
bZIP52(bZIP)/colamp-bZIP52-DAP-Seq(GSE60143)/Homer	NDNHCAGCTGTCANN	1e0	-1.366e+00	0.4489	1703.0	11.59%	3870.6	11.42%
WRKY40(WRKY)/colamp-WRKY40-DAP-Seq(GSE60143)/Homer	AHWAGTCAAC	1e0	-1.314e+00	0.4720	493.0	3.36%	1106.5	3.26%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	-1.313e+00	0.4720	6.0	0.04%	10.6	0.03%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.308e+00	0.4729	82.0	0.56%	176.9	0.52%
ANAC028(NAC)/col-ANAC028-DAP-Seq(GSE60143)/Homer	WRCTTGNNNNNCAAG	1e0	-1.304e+00	0.4740	695.0	4.73%	1567.5	4.62%
AT2G28920(ND)/col-AT2G28920-DAP-Seq(GSE60143)/Homer	WAGATATTTWTW	1e0	-1.293e+00	0.4783	255.0	1.74%	566.4	1.67%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.291e+00	0.4783	102.0	0.69%	221.1	0.65%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-1.291e+00	0.4783	102.0	0.69%	221.1	0.65%
EIN3(EIL)/col-EIN3-DAP-Seq(GSE60143)/Homer	ARATTCAATGWATYT	1e0	-1.291e+00	0.4783	102.0	0.69%	221.9	0.65%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-1.286e+00	0.4783	114.0	0.78%	248.7	0.73%
ANAC096(NAC)/colamp-ANAC096-DAP-Seq(GSE60143)/Homer	TACTTGWNNNWCAAG	1e0	-1.281e+00	0.4797	638.0	4.34%	1438.3	4.24%
GATA15(C2C2gata)/col-GATA15-DAP-Seq(GSE60143)/Homer	KATGATCA	1e0	-1.275e+00	0.4815	1267.0	8.62%	2877.7	8.49%
AGL95(ND)/col-AGL95-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-1.272e+00	0.4820	117.0	0.80%	255.1	0.75%
WRKY42(WRKY)/colamp-WRKY42-DAP-Seq(GSE60143)/Homer	NAAAGTCAACGN	1e0	-1.266e+00	0.4843	293.0	1.99%	653.0	1.93%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e0	-1.248e+00	0.4921	629.0	4.28%	1420.0	4.19%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-1.241e+00	0.4946	2683.0	18.26%	6130.5	18.08%
ANAC011(NAC)/col-ANAC011-DAP-Seq(GSE60143)/Homer	TDCTTGYRNNDCAAG	1e0	-1.241e+00	0.4946	356.0	2.42%	797.3	2.35%
AT3G58630(Trihelix)/col-AT3G58630-DAP-Seq(GSE60143)/Homer	TCTCCGGCGA	1e0	-1.239e+00	0.4946	181.0	1.23%	400.8	1.18%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.133e+00	0.5477	129.0	0.88%	285.0	0.84%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e0	-1.132e+00	0.5477	178.0	1.21%	396.6	1.17%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-1.127e+00	0.5494	671.0	4.57%	1521.3	4.49%
TGA4(bZIP)/colamp-TGA4-DAP-Seq(GSE60143)/Homer	RTGACGTCAKCW	1e0	-1.126e+00	0.5494	207.0	1.41%	462.6	1.36%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-1.119e+00	0.5513	478.0	3.25%	1080.2	3.19%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-1.114e+00	0.5534	213.0	1.45%	476.3	1.40%
AS2(LOBAS2)/col-AS2-DAP-Seq(GSE60143)/Homer	CCGDAAWWHMCGSCG	1e0	-1.078e+00	0.5723	82.0	0.56%	180.2	0.53%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e0	-1.077e+00	0.5723	154.0	1.05%	343.4	1.01%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-1.077e+00	0.5723	772.0	5.25%	1755.8	5.18%
RAP21(AP2EREBP)/colamp-RAP21-DAP-Seq(GSE60143)/Homer	BCACCGACAHNN	1e0	-1.059e+00	0.5802	130.0	0.88%	289.2	0.85%
VRN1(ABI3VP1)/col-VRN1-DAP-Seq(GSE60143)/Homer	TTTTTTTTTT	1e0	-1.045e+00	0.5874	1.0	0.01%	1.3	0.00%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-1.039e+00	0.5900	3802.0	25.88%	8726.6	25.74%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-1.015e+00	0.6031	58.0	0.39%	127.7	0.38%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-1.009e+00	0.6055	180.0	1.23%	404.2	1.19%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-1.001e+00	0.6094	303.0	2.06%	685.7	2.02%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-9.973e-01	0.6106	10.0	0.07%	20.7	0.06%
SND3(NAC)/col-SND3-DAP-Seq(GSE60143)/Homer	CTTNHNNNDNAAGNH	1e0	-9.729e-01	0.6245	690.0	4.70%	1573.9	4.64%
At1g69690(TCP)/colamp-At1g69690-DAP-Seq(GSE60143)/Homer	NHGTGGGGCCCACHW	1e0	-9.617e-01	0.6305	391.0	2.66%	888.9	2.62%
bZIP44(bZIP)/colamp-bZIP44-DAP-Seq(GSE60143)/Homer	NDTGCCACGTCAGCH	1e0	-9.547e-01	0.6337	18.0	0.12%	38.7	0.11%
PHV(HB)/col-PHV-DAP-Seq(GSE60143)/Homer	RTAATSATTA	1e0	-9.491e-01	0.6362	334.0	2.27%	758.3	2.24%
CRC(C2C2YABBY)/col-CRC-DAP-Seq(GSE60143)/Homer	TWATSATA	1e0	-9.474e-01	0.6362	1102.0	7.50%	2521.6	7.44%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-9.459e-01	0.6362	2540.0	17.29%	5830.9	17.20%
AT4G18450(AP2EREBP)/col-AT4G18450-DAP-Seq(GSE60143)/Homer	ATGGCGGCKG	1e0	-9.349e-01	0.6418	652.0	4.44%	1488.6	4.39%
At5g29000(G2like)/col-At5g29000-DAP-Seq(GSE60143)/Homer	RGAATATTCYHH	1e0	-9.232e-01	0.6483	251.0	1.71%	569.4	1.68%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-9.147e-01	0.6526	243.0	1.65%	551.5	1.63%
dHNF4(NR)/Fly-HNF4-ChIP-Seq(GSE73675)/Homer	GGTCCAAAGTCCAMT	1e0	-9.096e-01	0.6548	40.0	0.27%	89.0	0.26%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-9.044e-01	0.6570	16.0	0.11%	34.1	0.10%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e0	-9.015e-01	0.6578	1791.0	12.19%	4110.6	12.12%
ATHB6(Homeobox)/Arabidopsis-HB6-ChIP-Seq(GSE80564)/Homer	CAATNATTBN	1e0	-8.958e-01	0.6604	708.0	4.82%	1619.4	4.78%
BIM1(bHLH)/colamp-BIM1-DAP-Seq(GSE60143)/Homer	NNNNNNVTCACGTGM	1e0	-8.826e-01	0.6680	100.0	0.68%	225.5	0.67%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-8.778e-01	0.6701	53.0	0.36%	118.2	0.35%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-8.659e-01	0.6769	430.0	2.93%	982.7	2.90%
Rap210(AP2EREBP)/col-Rap210-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e0	-8.651e-01	0.6769	477.0	3.25%	1090.5	3.22%
WRKY65(WRKY)/colamp-WRKY65-DAP-Seq(GSE60143)/Homer	AWWWAGTCAACG	1e0	-8.510e-01	0.6847	377.0	2.57%	861.4	2.54%
RAV1(RAV)/colamp-RAV1-DAP-Seq(GSE60143)/Homer	TWWTTTCTGTTG	1e0	-8.473e-01	0.6860	631.0	4.29%	1445.6	4.26%
At1g74840(MYBrelated)/col100-At1g74840-DAP-Seq(GSE60143)/Homer	YHTTATCCAWWT	1e0	-8.456e-01	0.6860	674.0	4.59%	1544.8	4.56%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e0	-8.394e-01	0.6890	402.0	2.74%	919.1	2.71%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-8.357e-01	0.6904	134.0	0.91%	304.9	0.90%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-8.349e-01	0.6904	2138.0	14.55%	4916.1	14.50%
RVE1(MYBrelated)/col-RVE1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-8.330e-01	0.6904	518.0	3.53%	1186.5	3.50%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e0	-8.174e-01	0.6995	91.0	0.62%	206.5	0.61%
CAMTA5(CAMTA)/col-CAMTA5-DAP-Seq(GSE60143)/Homer	ACGCGTTTTANACRC	1e0	-7.876e-01	0.7195	240.0	1.63%	549.1	1.62%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-7.876e-01	0.7195	68.0	0.46%	155.0	0.46%
AT4G27900(C2C2COlike)/col-AT4G27900-DAP-Seq(GSE60143)/Homer	TCTCVACCGTTSATT	1e0	-7.847e-01	0.7195	4.0	0.03%	8.4	0.02%
MYB62(MYB)/colamp-MYB62-DAP-Seq(GSE60143)/Homer	NTACCTAACT	1e0	-7.773e-01	0.7232	1537.0	10.46%	3537.1	10.43%
AT2G20400(G2like)/colamp-AT2G20400-DAP-Seq(GSE60143)/Homer	DNVGAATATTCBNHN	1e0	-7.701e-01	0.7272	114.0	0.78%	260.2	0.77%
WRKY26(WRKY)/colamp-WRKY26-DAP-Seq(GSE60143)/Homer	CGTTGACTWDKN	1e0	-7.646e-01	0.7300	419.0	2.85%	962.3	2.84%
At5g52660(MYBrelated)/colamp-At5g52660-DAP-Seq(GSE60143)/Homer	HAAAAATATCTW	1e0	-7.590e-01	0.7328	418.0	2.84%	960.5	2.83%
ANAC103(NAC)/col-ANAC103-DAP-Seq(GSE60143)/Homer	AACTTGNWNWNCAAG	1e0	-7.568e-01	0.7332	378.0	2.57%	868.6	2.56%
HSF7(HSF)/colamp-HSF7-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-7.469e-01	0.7392	208.0	1.42%	477.3	1.41%
At4g28140(AP2EREBP)/colamp-At4g28140-DAP-Seq(GSE60143)/Homer	DCCACCGACCAW	1e0	-7.423e-01	0.7414	280.0	1.91%	643.7	1.90%
SGR5(C2H2)/colamp-SGR5-DAP-Seq(GSE60143)/Homer	TTTGTCTTTTTT	1e0	-7.193e-01	0.7573	656.0	4.46%	1511.1	4.46%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-7.177e-01	0.7573	453.0	3.08%	1043.5	3.08%
At5g08520(MYBrelated)/colamp-At5g08520-DAP-Seq(GSE60143)/Homer	ADBSTTATCY	1e0	-7.146e-01	0.7583	965.0	6.57%	2224.3	6.56%
ATHB21(HB)/colamp-ATHB21-DAP-Seq(GSE60143)/Homer	YCAATWAT	1e0	-7.140e-01	0.7583	449.0	3.06%	1034.2	3.05%
PTF1(TCP)/colamp-PTF1-DAP-Seq(GSE60143)/Homer	RDDGGGACCACA	1e0	-7.131e-01	0.7583	161.0	1.10%	370.9	1.09%
ABF2(bZIP)/col-ABF2-DAP-Seq(GSE60143)/Homer	KGMCACGTGDCMHHH	1e0	-7.007e-01	0.7651	215.0	1.46%	495.7	1.46%
ANAC017(NAC)/colamp-ANAC017-DAP-Seq(GSE60143)/Homer	TMCTTGNNNNNCAAG	1e0	-6.920e-01	0.7705	113.0	0.77%	260.6	0.77%
At5g65130(AP2EREBP)/colamp-At5g65130-DAP-Seq(GSE60143)/Homer	CCRCCGACAWTN	1e0	-6.897e-01	0.7710	233.0	1.59%	538.0	1.59%
AT3G10113(MYBrelated)/col-AT3G10113-DAP-Seq(GSE60143)/Homer	WNAAATATCWWN	1e0	-6.895e-01	0.7710	415.0	2.82%	957.1	2.82%
VND3(NAC)/colamp-VND3-DAP-Seq(GSE60143)/Homer	TRCTTGWDNHWCAAG	1e0	-6.806e-01	0.7754	621.0	4.23%	1433.7	4.23%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-6.756e-01	0.7780	63.0	0.43%	145.9	0.43%
ANAC005(NAC)/col-ANAC005-DAP-Seq(GSE60143)/Homer	WVCTTVTWNHABAAG	1e0	-6.751e-01	0.7780	503.0	3.42%	1161.7	3.43%
ANAC050(NAC)/colamp-ANAC050-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAAG	1e0	-6.664e-01	0.7826	540.0	3.68%	1247.4	3.68%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-6.658e-01	0.7826	24.0	0.16%	55.3	0.16%
HSFA6A(HSF)/col-HSFA6A-DAP-Seq(GSE60143)/Homer	RGAAGNTTCTAGAAN	1e0	-6.587e-01	0.7861	49.0	0.33%	113.3	0.33%
At1g19000(MYBrelated)/colamp-At1g19000-DAP-Seq(GSE60143)/Homer	WWTGGATAADDT	1e0	-6.518e-01	0.7903	737.0	5.02%	1703.8	5.03%
At2g44940(AP2EREBP)/colamp-At2g44940-DAP-Seq(GSE60143)/Homer	NYACCGACAHNNNNN	1e0	-6.402e-01	0.7981	146.0	0.99%	338.3	1.00%
CUC3(NAC)/col-CUC3-DAP-Seq(GSE60143)/Homer	TRCKTGWNNNACAMG	1e0	-6.261e-01	0.8081	278.0	1.89%	644.2	1.90%
MYB10(MYB)/col-MYB10-DAP-Seq(GSE60143)/Homer	YCCACCTACCHH	1e0	-6.068e-01	0.8225	434.0	2.95%	1006.4	2.97%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-6.059e-01	0.8225	568.0	3.87%	1316.3	3.88%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-6.009e-01	0.8247	570.0	3.88%	1321.9	3.90%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-5.924e-01	0.8304	635.0	4.32%	1472.8	4.34%
MYB94(MYB)/col-MYB94-DAP-Seq(GSE60143)/Homer	WGGTRGTTGGKA	1e0	-5.910e-01	0.8304	523.0	3.56%	1213.9	3.58%
BIM3(bHLH)/col-BIM3-DAP-Seq(GSE60143)/Homer	TWVTCACGTGAB	1e0	-5.877e-01	0.8316	118.0	0.80%	275.2	0.81%
CAMTA1(CAMTA)/col-CAMTA1-DAP-Seq(GSE60143)/Homer	WWAACGCGTT	1e0	-5.805e-01	0.8363	511.0	3.48%	1186.1	3.50%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-5.796e-01	0.8363	1076.0	7.32%	2493.9	7.36%
ANAC004(NAC)/colamp-ANAC004-DAP-Seq(GSE60143)/Homer	WNCTTVYNNNRBAAG	1e0	-5.746e-01	0.8385	345.0	2.35%	803.0	2.37%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e0	-5.683e-01	0.8424	64.0	0.44%	150.3	0.44%
HSFB3(HSF)/colamp-HSFB3-DAP-Seq(GSE60143)/Homer	TTCTAGAAGMTTHTW	1e0	-5.674e-01	0.8424	73.0	0.50%	171.2	0.51%
WRKY47(WRKY)/colamp-WRKY47-DAP-Seq(GSE60143)/Homer	WAAGTCAACGBT	1e0	-5.670e-01	0.8424	190.0	1.29%	443.5	1.31%
HAT5(Homeobox)/colamp-HAT5-DAP-Seq(GSE60143)/Homer	DCAATWATTG	1e0	-5.576e-01	0.8474	130.0	0.88%	304.4	0.90%
At3g04030(G2like)/col-At3g04030-DAP-Seq(GSE60143)/Homer	DRGAATCT	1e0	-5.502e-01	0.8523	1098.0	7.47%	2547.9	7.52%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-5.452e-01	0.8552	224.0	1.52%	523.8	1.54%
At2g45680(TCP)/colamp-At2g45680-DAP-Seq(GSE60143)/Homer	GTGGGNCCCACNDND	1e0	-5.443e-01	0.8552	92.0	0.63%	216.2	0.64%
ANL2(HB)/col-ANL2-DAP-Seq(GSE60143)/Homer	CATTAATTGC	1e0	-5.433e-01	0.8552	518.0	3.53%	1205.5	3.56%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-5.420e-01	0.8552	565.0	3.85%	1314.1	3.88%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-5.396e-01	0.8552	897.0	6.10%	2083.4	6.15%
bHLH34(bHLH)/colamp-bHLH34-DAP-Seq(GSE60143)/Homer	HGWGRHWGACACGTG	1e0	-5.222e-01	0.8682	313.0	2.13%	731.5	2.16%
PLT3(AP2EREBP)/col-PLT3-DAP-Seq(GSE60143)/Homer	GCACGNWTHYCGAGG	1e0	-5.217e-01	0.8682	40.0	0.27%	95.6	0.28%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-5.155e-01	0.8713	101.0	0.69%	238.7	0.70%
ATHB20(Homeobox)/colamp-ATHB20-DAP-Seq(GSE60143)/Homer	CAATHATT	1e0	-5.103e-01	0.8744	382.0	2.60%	892.7	2.63%
GT3a(Trihelix)/col-GT3a-DAP-Seq(GSE60143)/Homer	WNACACGTGTYWWAW	1e0	-4.995e-01	0.8825	129.0	0.88%	304.0	0.90%
AT1G10720(BSD)/col-AT1G10720-DAP-Seq(GSE60143)/Homer	TTCTAGAAKCTTCTA	1e0	-4.951e-01	0.8850	30.0	0.20%	72.0	0.21%
AT5G25475(ABI3VP1)/col-AT5G25475-DAP-Seq(GSE60143)/Homer	RNNRNCAAGCADNDB	1e0	-4.937e-01	0.8850	1379.0	9.39%	3204.2	9.45%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-4.899e-01	0.8868	27.0	0.18%	65.6	0.19%
AT1G24250(Orphan)/col-AT1G24250-DAP-Seq(GSE60143)/Homer	KTDGTTGGTDGTTGG	1e0	-4.888e-01	0.8868	285.0	1.94%	668.5	1.97%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-4.862e-01	0.8873	1646.0	11.20%	3823.4	11.28%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-4.804e-01	0.8910	931.0	6.34%	2168.3	6.40%
CUC2(NAC)/colamp-CUC2-DAP-Seq(GSE60143)/Homer	TRCKTGTNNNWCAMG	1e0	-4.792e-01	0.8910	274.0	1.86%	643.1	1.90%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-4.750e-01	0.8931	365.0	2.48%	855.6	2.52%
HSF21(HSF)/col-HSF21-DAP-Seq(GSE60143)/Homer	CTTCTAGAAGMTTYW	1e0	-4.732e-01	0.8933	111.0	0.76%	263.1	0.78%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-4.730e-01	0.8933	285.0	1.94%	669.3	1.97%
AT4G00250(GeBP)/col-AT4G00250-DAP-Seq(GSE60143)/Homer	WDTGGATAAKRT	1e0	-4.721e-01	0.8933	497.0	3.38%	1162.5	3.43%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-4.692e-01	0.8933	263.0	1.79%	618.8	1.83%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-4.653e-01	0.8948	317.0	2.16%	744.5	2.20%
IDD5(C2H2)/colamp-IDD5-DAP-Seq(GSE60143)/Homer	TTTTGTCTTTTTBTK	1e0	-4.642e-01	0.8948	591.0	4.02%	1381.2	4.07%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-4.588e-01	0.8979	177.0	1.20%	418.4	1.23%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-4.585e-01	0.8979	264.0	1.80%	621.2	1.83%
ANAC092(NAC)/colamp-ANAC092-DAP-Seq(GSE60143)/Homer	WRCKTGWNNNWCAMG	1e0	-4.570e-01	0.8979	361.0	2.46%	847.5	2.50%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-4.536e-01	0.8985	2455.0	16.71%	5700.3	16.81%
LEP(AP2EREBP)/col-LEP-DAP-Seq(GSE60143)/Homer	CDCCGCCGTC	1e0	-4.528e-01	0.8985	455.0	3.10%	1066.5	3.15%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-4.526e-01	0.8985	1122.0	7.64%	2615.0	7.71%
GT1(Trihelix)/col-GT1-DAP-Seq(GSE60143)/Homer	TTAACCATGGTTAAD	1e0	-4.442e-01	0.9028	10.0	0.07%	25.6	0.08%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-4.346e-01	0.9101	185.0	1.26%	438.6	1.29%
 Ik-1	NHTTGGGAATRCC	1e0	-4.334e-01	0.9101	14693.0	100.00%	33903.3	100.00%
AT1G01250(AP2EREBP)/col-AT1G01250-DAP-Seq(GSE60143)/Homer	YCACCGACAHTW	1e0	-4.332e-01	0.9101	53.0	0.36%	128.6	0.38%
ANAC057(NAC)/colamp-ANAC057-DAP-Seq(GSE60143)/Homer	DVCKTGNNNNNCAMG	1e0	-4.331e-01	0.9101	687.0	4.68%	1607.6	4.74%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-4.316e-01	0.9101	2538.0	17.27%	5896.6	17.39%
HSFA1E(HSF)/col-HSFA1E-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-4.211e-01	0.9155	85.0	0.58%	204.6	0.60%
VND4(NAC)/colamp-VND4-DAP-Seq(GSE60143)/Homer	WRCTTGWANWWCAAG	1e0	-4.209e-01	0.9155	646.0	4.40%	1513.7	4.46%
At5g66730(C2H2)/colamp-At5g66730-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTK	1e0	-4.208e-01	0.9155	224.0	1.52%	530.2	1.56%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-4.184e-01	0.9155	440.0	2.99%	1034.6	3.05%
JKD(C2H2)/col-JKD-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTT	1e0	-4.112e-01	0.9190	155.0	1.05%	369.1	1.09%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-4.098e-01	0.9190	81.0	0.55%	195.5	0.58%
CUC1(NAC)/col-CUC1-DAP-Seq(GSE60143)/Homer	TACTTGTNNNACAAG	1e0	-4.089e-01	0.9190	377.0	2.57%	888.1	2.62%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-4.025e-01	0.9229	40.0	0.27%	98.9	0.29%
ANAC087(NAC)/col-ANAC087-DAP-Seq(GSE60143)/Homer	WVCKTGHNNNWCAMG	1e0	-4.020e-01	0.9229	247.0	1.68%	585.1	1.73%
SPL3(SBP)/colamp-SPL3-DAP-Seq(GSE60143)/Homer	WDTTGTACGGAH	1e0	-4.016e-01	0.9229	20.0	0.14%	50.5	0.15%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-3.836e-01	0.9363	898.0	6.11%	2103.6	6.20%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-3.805e-01	0.9378	481.0	3.27%	1133.5	3.34%
At1g14580(C2H2)/colamp-At1g14580-DAP-Seq(GSE60143)/Homer	CASAAAAMGACAAAA	1e0	-3.801e-01	0.9378	136.0	0.93%	326.0	0.96%
ATHB18(Homeobox)/colamp-ATHB18-DAP-Seq(GSE60143)/Homer	YCAATSATTG	1e0	-3.800e-01	0.9378	153.0	1.04%	366.0	1.08%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-3.793e-01	0.9378	26.0	0.18%	65.7	0.19%
HAT1(Homeobox)/col-HAT1-DAP-Seq(GSE60143)/Homer	SCAATCATTGNN	1e0	-3.769e-01	0.9378	144.0	0.98%	345.4	1.02%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-3.762e-01	0.9378	274.0	1.86%	650.1	1.92%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-3.744e-01	0.9378	649.0	4.42%	1525.6	4.50%
ANAC062(NAC)/colamp-ANAC062-DAP-Seq(GSE60143)/Homer	TACTTANTNWNYAAG	1e0	-3.732e-01	0.9378	368.0	2.50%	870.7	2.57%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-3.732e-01	0.9378	1191.0	8.11%	2785.1	8.21%
NTM1(NAC)/col-NTM1-DAP-Seq(GSE60143)/Homer	ACTTRTARAASAAGT	1e0	-3.698e-01	0.9378	514.0	3.50%	1211.5	3.57%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-3.688e-01	0.9378	1723.0	11.73%	4020.1	11.86%
ANAC058(NAC)/col-ANAC058-DAP-Seq(GSE60143)/Homer	TWCTTGTDNNACAAG	1e0	-3.632e-01	0.9388	518.0	3.53%	1221.7	3.60%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-3.458e-01	0.9539	2124.0	14.46%	4954.6	14.61%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-3.389e-01	0.9591	904.0	6.15%	2124.0	6.26%
IDD2(C2H2)/colamp-IDD2-DAP-Seq(GSE60143)/Homer	HAVAAAAMGACAAAA	1e0	-3.376e-01	0.9591	105.0	0.71%	255.0	0.75%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-3.262e-01	0.9685	49.0	0.33%	122.6	0.36%
IDD4(C2H2)/col-IDD4-DAP-Seq(GSE60143)/Homer	TTTGTCTTTWTB	1e0	-3.171e-01	0.9759	776.0	5.28%	1828.7	5.39%
AtIDD11(C2H2)/colamp-AtIDD11-DAP-Seq(GSE60143)/Homer	TTTGTCGTTT	1e0	-3.167e-01	0.9759	318.0	2.16%	758.2	2.24%
ANAC020(NAC)/col-ANAC020-DAP-Seq(GSE60143)/Homer	DVCKTGHNNNDCAAG	1e0	-3.131e-01	0.9770	579.0	3.94%	1369.2	4.04%
WRKY7(WRKY)/colamp-WRKY7-DAP-Seq(GSE60143)/Homer	AAAAGTCAACGSHWD	1e0	-3.110e-01	0.9776	2.0	0.01%	6.1	0.02%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-3.072e-01	0.9800	227.0	1.54%	545.8	1.61%
TGA1(bZIP)/colamp-TGA1-DAP-Seq(GSE60143)/Homer	TGACGTCAKC	1e0	-3.059e-01	0.9800	295.0	2.01%	705.1	2.08%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-3.036e-01	0.9807	229.0	1.56%	550.6	1.62%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-3.034e-01	0.9807	961.0	6.54%	2261.5	6.67%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-3.026e-01	0.9807	108.0	0.74%	264.6	0.78%
WRKY14(WRKY)/colamp-WRKY14-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTN	1e0	-3.003e-01	0.9807	383.0	2.61%	912.8	2.69%
HAT2(Homeobox)/colamp-HAT2-DAP-Seq(GSE60143)/Homer	CYAATSATTR	1e0	-2.962e-01	0.9822	755.0	5.14%	1782.5	5.26%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-2.913e-01	0.9857	229.0	1.56%	551.4	1.63%
MYB121(MYB)/col-MYB121-DAP-Seq(GSE60143)/Homer	YNTACCTAACWW	1e0	-2.888e-01	0.9867	342.0	2.33%	817.9	2.41%
NUC(C2H2)/col-NUC-DAP-Seq(GSE60143)/Homer	HAVAAAACGACAAAA	1e0	-2.885e-01	0.9867	75.0	0.51%	186.5	0.55%
MYB96(MYB)/colamp-MYB96-DAP-Seq(GSE60143)/Homer	WGGTRGTTGG	1e0	-2.827e-01	0.9900	1063.0	7.23%	2502.9	7.38%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e0	-2.813e-01	0.9900	473.0	3.22%	1125.3	3.32%
FAR1(FAR1)/col-FAR1-DAP-Seq(GSE60143)/Homer	TKNNNYYCACGCGCY	1e0	-2.699e-01	0.9999	145.0	0.99%	354.7	1.05%
HDG7(HB)/col-HDG7-DAP-Seq(GSE60143)/Homer	WGCATTTAATGC	1e0	-2.681e-01	1.0000	150.0	1.02%	366.4	1.08%
AT3G10580(MYBrelated)/colamp-AT3G10580-DAP-Seq(GSE60143)/Homer	TACCTAACWNHW	1e0	-2.635e-01	1.0000	429.0	2.92%	1024.8	3.02%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-2.583e-01	1.0000	257.0	1.75%	620.3	1.83%
NTM2(NAC)/col-NTM2-DAP-Seq(GSE60143)/Homer	CTTRTNNNAYAAGBH	1e0	-2.581e-01	1.0000	549.0	3.74%	1306.8	3.85%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-2.569e-01	1.0000	71.0	0.48%	178.2	0.53%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-2.526e-01	1.0000	428.0	2.91%	1023.8	3.02%
TGA6(bZIP)/colamp-TGA6-DAP-Seq(GSE60143)/Homer	TGACGTCABC	1e0	-2.508e-01	1.0000	459.0	3.12%	1096.9	3.24%
ANAC075(NAC)/col-ANAC075-DAP-Seq(GSE60143)/Homer	CTTSWWNWWSAAGYT	1e0	-2.476e-01	1.0000	307.0	2.09%	739.8	2.18%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-2.473e-01	1.0000	202.0	1.37%	491.6	1.45%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-2.468e-01	1.0000	403.0	2.74%	965.7	2.85%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-2.399e-01	1.0000	263.0	1.79%	636.0	1.88%
WRKY8(WRKY)/colamp-WRKY8-DAP-Seq(GSE60143)/Homer	CGTTGACTTT	1e0	-2.397e-01	1.0000	76.0	0.52%	191.1	0.56%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-2.395e-01	1.0000	184.0	1.25%	449.7	1.33%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e0	-2.375e-01	1.0000	3261.0	22.19%	7617.1	22.47%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-2.349e-01	1.0000	167.0	1.14%	409.7	1.21%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-2.344e-01	1.0000	9.0	0.06%	26.6	0.08%
ATHB15(HB)/col-ATHB15-DAP-Seq(GSE60143)/Homer	GYAATSATTA	1e0	-2.330e-01	1.0000	261.0	1.78%	632.9	1.87%
SPL13(SBP)/col-SPL13-DAP-Seq(GSE60143)/Homer	WAHTGTACGGAH	1e0	-2.275e-01	1.0000	42.0	0.29%	109.6	0.32%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-2.265e-01	1.0000	60.0	0.41%	153.0	0.45%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-2.211e-01	1.0000	456.0	3.10%	1093.0	3.22%
bZIP50(bZIP)/colamp-bZIP50-DAP-Seq(GSE60143)/Homer	GATGACGTCA	1e0	-2.204e-01	1.0000	828.0	5.64%	1965.3	5.80%
WRKY17(WRKY)/colamp-WRKY17-DAP-Seq(GSE60143)/Homer	GCGTTGACTTTT	1e0	-2.202e-01	1.0000	7.0	0.05%	21.0	0.06%
IDD7(C2H2)/col-IDD7-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTN	1e0	-2.199e-01	1.0000	326.0	2.22%	787.7	2.32%
At1g49010(MYBrelated)/col-At1g49010-DAP-Seq(GSE60143)/Homer	RGATAASNTT	1e0	-2.189e-01	1.0000	1784.0	12.14%	4194.6	12.37%
At5g58900(MYBrelated)/colamp-At5g58900-DAP-Seq(GSE60143)/Homer	WWWTYTTATCTWWWW	1e0	-2.174e-01	1.0000	1344.0	9.15%	3170.3	9.35%
WRKY43(WRKY)/colamp-WRKY43-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTT	1e0	-2.160e-01	1.0000	256.0	1.74%	622.9	1.84%
ATHB33(ZFHD)/col-ATHB33-DAP-Seq(GSE60143)/Homer	NGTRATTAAK	1e0	-2.108e-01	1.0000	1306.0	8.89%	3083.4	9.09%
FUS3(ABI3VP1)/col-FUS3-DAP-Seq(GSE60143)/Homer	DNNWTNTGCATGKNN	1e0	-2.108e-01	1.0000	920.0	6.26%	2182.2	6.44%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-2.106e-01	1.0000	164.0	1.12%	404.9	1.19%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-2.097e-01	1.0000	103.0	0.70%	258.6	0.76%
WRKY30(WRKY)/colamp-WRKY30-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e0	-2.069e-01	1.0000	221.0	1.50%	540.7	1.59%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-2.058e-01	1.0000	261.0	1.78%	635.1	1.87%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-1.944e-01	1.0000	1.0	0.01%	4.1	0.01%
bZIP42(bZIP)/colamp-bZIP42-DAP-Seq(GSE60143)/Homer	GCCACGTCAGCA	1e0	-1.944e-01	1.0000	1.0	0.01%	4.9	0.01%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-1.943e-01	1.0000	650.0	4.42%	1554.0	4.58%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-1.884e-01	1.0000	641.0	4.36%	1533.3	4.52%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.878e-01	1.0000	301.0	2.05%	732.9	2.16%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-1.868e-01	1.0000	1085.0	7.38%	2573.5	7.59%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-1.830e-01	1.0000	2799.0	19.05%	6564.3	19.36%
SPL5(SBP)/colamp-SPL5-DAP-Seq(GSE60143)/Homer	NNHGTACGGHNN	1e0	-1.802e-01	1.0000	250.0	1.70%	612.2	1.81%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	-1.801e-01	1.0000	54.0	0.37%	141.3	0.42%
AT1G19040(NAC)/col-AT1G19040-DAP-Seq(GSE60143)/Homer	CTTGNDNHNCAAGYW	1e0	-1.767e-01	1.0000	116.0	0.79%	292.5	0.86%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-1.726e-01	1.0000	615.0	4.19%	1475.9	4.35%
GBF5(bZIP)/colamp-GBF5-DAP-Seq(GSE60143)/Homer	WKNWSACGTGGCAWN	1e0	-1.700e-01	1.0000	289.0	1.97%	706.4	2.08%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-1.643e-01	1.0000	548.0	3.73%	1319.4	3.89%
BPC6(BBRBPC)/col-BPC6-DAP-Seq(GSE60143)/Homer	YTYTCTCTCTCTCTA	1e0	-1.635e-01	1.0000	17.0	0.12%	49.4	0.15%
KAN2(G2like)/colamp-KAN2-DAP-Seq(GSE60143)/Homer	ATATTCTY	1e0	-1.626e-01	1.0000	1423.0	9.68%	3369.6	9.94%
BZR1(BZR)/col-BZR1-DAP-Seq(GSE60143)/Homer	NNCRCACGTGCG	1e0	-1.547e-01	1.0000	104.0	0.71%	265.3	0.78%
bZIP53(bZIP)/colamp-bZIP53-DAP-Seq(GSE60143)/Homer	NDNHSACGTGKMNNN	1e0	-1.525e-01	1.0000	306.0	2.08%	749.6	2.21%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-1.447e-01	1.0000	451.0	3.07%	1094.2	3.23%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-1.444e-01	1.0000	1373.0	9.34%	3258.3	9.61%
AT5G22990(C2H2)/col-AT5G22990-DAP-Seq(GSE60143)/Homer	WCGAHDTCGWHN	1e0	-1.443e-01	1.0000	49.0	0.33%	131.4	0.39%
BAM8(BES1)/col-BAM8-DAP-Seq(GSE60143)/Homer	NNWSACACGTGTSWN	1e0	-1.424e-01	1.0000	127.0	0.86%	323.0	0.95%
bZIP48(bZIP)/colamp-bZIP48-DAP-Seq(GSE60143)/Homer	DDWWKVTSACGTGGC	1e0	-1.389e-01	1.0000	308.0	2.10%	756.6	2.23%
bHLH28(bHLH)/col-bHLH28-DAP-Seq(GSE60143)/Homer	NHHTGTACGGAH	1e0	-1.368e-01	1.0000	135.0	0.92%	342.5	1.01%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-1.354e-01	1.0000	244.0	1.66%	604.5	1.78%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-1.300e-01	1.0000	41.0	0.28%	112.1	0.33%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.296e-01	1.0000	59.0	0.40%	157.5	0.46%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-1.261e-01	1.0000	302.0	2.06%	744.6	2.20%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-1.253e-01	1.0000	341.0	2.32%	837.3	2.47%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e0	-1.251e-01	1.0000	1212.0	8.25%	2888.5	8.52%
ERF9(AP2EREBP)/colamp-ERF9-DAP-Seq(GSE60143)/Homer	AWATGGCGGCGG	1e0	-1.219e-01	1.0000	363.0	2.47%	890.3	2.63%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-1.146e-01	1.0000	804.0	5.47%	1934.3	5.71%
ZML2(C2C2gata)/col-ZML2-DAP-Seq(GSE60143)/Homer	CATCATCATC	1e0	-1.141e-01	1.0000	183.0	1.25%	461.2	1.36%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-1.135e-01	1.0000	265.0	1.80%	658.1	1.94%
MYB39(MYB)/col-MYB39-DAP-Seq(GSE60143)/Homer	WWAARKTAGGTGRAA	1e0	-1.072e-01	1.0000	133.0	0.91%	341.1	1.01%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.070e-01	1.0000	49.0	0.33%	134.2	0.40%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-1.066e-01	1.0000	749.0	5.10%	1807.9	5.33%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-1.024e-01	1.0000	835.0	5.68%	2011.4	5.93%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-9.956e-02	1.0000	1440.0	9.80%	3432.7	10.12%
Replumless(BLH)/Arabidopsis-RPL.GFP-ChIP-Seq(GSE78727)/Homer	HGTCWHATCA	1e0	-9.769e-02	1.0000	1092.0	7.43%	2617.6	7.72%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e0	-9.524e-02	1.0000	870.0	5.92%	2096.6	6.18%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-9.397e-02	1.0000	133.0	0.91%	343.5	1.01%
SND2(NAC)/colamp-SND2-DAP-Seq(GSE60143)/Homer	CTTVWNNNWBAAGNW	1e0	-8.547e-02	1.0000	487.0	3.31%	1194.5	3.52%
At4g18890(BZR)/col-At4g18890-DAP-Seq(GSE60143)/Homer	NDBRCACGTGYR	1e0	-8.514e-02	1.0000	185.0	1.26%	471.9	1.39%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-8.425e-02	1.0000	218.0	1.48%	551.6	1.63%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-8.341e-02	1.0000	138.0	0.94%	357.6	1.05%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-8.102e-02	1.0000	169.0	1.15%	433.2	1.28%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e0	-7.944e-02	1.0000	213.0	1.45%	540.1	1.59%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-7.738e-02	1.0000	412.0	2.80%	1018.7	3.00%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-7.736e-02	1.0000	33.0	0.22%	96.9	0.29%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-7.545e-02	1.0000	1758.0	11.96%	4189.3	12.36%
MGP(C2H2)/colamp-MGP-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTW	1e0	-7.194e-02	1.0000	183.0	1.25%	469.5	1.38%
GBF6(bZIP)/colamp-GBF6-DAP-Seq(GSE60143)/Homer	WWTGMCACGTCABCW	1e0	-6.902e-02	1.0000	193.0	1.31%	494.0	1.46%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-6.707e-02	1.0000	581.0	3.95%	1424.7	4.20%
AREB3(bZIP)/col-AREB3-DAP-Seq(GSE60143)/Homer	NKGMCACGTGDCMNN	1e0	-6.567e-02	1.0000	289.0	1.97%	727.4	2.15%
AT3G42860(zfGRF)/col-AT3G42860-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e0	-6.442e-02	1.0000	188.0	1.28%	483.5	1.43%
MYB49(MYB)/col-MYB49-DAP-Seq(GSE60143)/Homer	ARKTAGGTRR	1e0	-6.338e-02	1.0000	1110.0	7.55%	2676.7	7.90%
ABF1(bZIP)/Arabidopsis-ABF1-ChIP-Seq(GSE80564)/Homer	CACGTGGC	1e0	-6.289e-02	1.0000	1112.0	7.57%	2681.7	7.91%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-6.261e-02	1.0000	116.0	0.79%	307.2	0.91%
SPL14(SBP)/col-SPL14-DAP-Seq(GSE60143)/Homer	NNWHTGTACGGAHNH	1e0	-6.234e-02	1.0000	77.0	0.52%	210.8	0.62%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-6.088e-02	1.0000	367.0	2.50%	916.6	2.70%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-5.975e-02	1.0000	94.0	0.64%	253.4	0.75%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-5.853e-02	1.0000	2121.0	14.44%	5050.9	14.90%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-5.838e-02	1.0000	3064.0	20.85%	7250.2	21.39%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-5.716e-02	1.0000	356.0	2.42%	891.9	2.63%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-5.714e-02	1.0000	762.0	5.19%	1858.9	5.48%
bZIP16(bZIP)/colamp-bZIP16-DAP-Seq(GSE60143)/Homer	TGCCACGTGD	1e0	-5.618e-02	1.0000	267.0	1.82%	677.5	2.00%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-5.328e-02	1.0000	588.0	4.00%	1447.1	4.27%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-5.295e-02	1.0000	215.0	1.46%	552.7	1.63%
WRKY11(WRKY)/col-WRKY11-DAP-Seq(GSE60143)/Homer	SCGTTGACTTTN	1e0	-5.222e-02	1.0000	81.0	0.55%	222.6	0.66%
AT1G04880(ARID)/colamp-AT1G04880-DAP-Seq(GSE60143)/Homer	AAACTATATADTATA	1e0	-4.852e-02	1.0000	70.0	0.48%	195.1	0.58%
bHLH74(bHLH)/col-bHLH74-DAP-Seq(GSE60143)/Homer	DRATCACGTGAB	1e0	-4.687e-02	1.0000	297.0	2.02%	754.0	2.22%
MS188(MYB)/colamp-MS188-DAP-Seq(GSE60143)/Homer	WARKTAGGTRRA	1e0	-4.683e-02	1.0000	727.0	4.95%	1781.0	5.25%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-4.679e-02	1.0000	375.0	2.55%	941.3	2.78%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e0	-4.675e-02	1.0000	571.0	3.89%	1410.8	4.16%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e0	-4.428e-02	1.0000	273.0	1.86%	696.5	2.05%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-4.408e-02	1.0000	580.0	3.95%	1434.0	4.23%
ATHB25(ZFHD)/colamp-ATHB25-DAP-Seq(GSE60143)/Homer	TAATTAVB	1e0	-4.308e-02	1.0000	1088.0	7.40%	2638.2	7.78%
ATHB23(ZFHD)/col-ATHB23-DAP-Seq(GSE60143)/Homer	HTAATTARNN	1e0	-4.302e-02	1.0000	871.0	5.93%	2125.6	6.27%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e0	-4.292e-02	1.0000	573.0	3.90%	1417.6	4.18%
AT1G23810(Orphan)/col-AT1G23810-DAP-Seq(GSE60143)/Homer	TTCTAGAAGSTTCTA	1e0	-4.169e-02	1.0000	43.0	0.29%	127.8	0.38%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-3.865e-02	1.0000	244.0	1.66%	628.7	1.85%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-3.705e-02	1.0000	571.0	3.89%	1416.0	4.18%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-3.665e-02	1.0000	764.0	5.20%	1876.9	5.54%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-3.577e-02	1.0000	366.0	2.49%	925.5	2.73%
MYB44(MYB)/colamp-MYB44-DAP-Seq(GSE60143)/Homer	CVGTTWWKTCNGTTA	1e0	-3.513e-02	1.0000	44.0	0.30%	131.8	0.39%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-3.350e-02	1.0000	170.0	1.16%	449.1	1.32%
WRKY21(WRKY)/colamp-WRKY21-DAP-Seq(GSE60143)/Homer	DCGTTGACTTTT	1e0	-3.304e-02	1.0000	65.0	0.44%	186.4	0.55%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e0	-3.048e-02	1.0000	602.0	4.10%	1495.8	4.41%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-2.903e-02	1.0000	744.0	5.06%	1835.7	5.41%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-2.830e-02	1.0000	936.0	6.37%	2292.6	6.76%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e0	-2.693e-02	1.0000	1471.0	10.01%	3558.7	10.50%
MYB63(MYB)/col-MYB63-DAP-Seq(GSE60143)/Homer	BHYACCWACCHH	1e0	-2.643e-02	1.0000	480.0	3.27%	1206.6	3.56%
bZIP28(bZIP)/col-bZIP28-DAP-Seq(GSE60143)/Homer	TGCCACGTSABH	1e0	-2.620e-02	1.0000	254.0	1.73%	659.6	1.95%
HSFB4(HSF)/col-HSFB4-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-2.555e-02	1.0000	30.0	0.20%	96.7	0.29%
TCP7(TCP)/col-TCP7-DAP-Seq(GSE60143)/Homer	GTGGGSCCCACHHNN	1e0	-2.514e-02	1.0000	844.0	5.74%	2077.4	6.13%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-2.479e-02	1.0000	430.0	2.93%	1087.9	3.21%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-2.415e-02	1.0000	628.0	4.27%	1563.9	4.61%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-2.353e-02	1.0000	2882.0	19.61%	6872.5	20.27%
bHLH18(bHLH)/col-bHLH18-DAP-Seq(GSE60143)/Homer	CACGTGTTYCACGTG	1e0	-2.227e-02	1.0000	11.0	0.07%	43.2	0.13%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-2.226e-02	1.0000	12.0	0.08%	47.0	0.14%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e0	-2.179e-02	1.0000	299.0	2.03%	772.3	2.28%
GBF3(bZIP)/Arabidopsis-GBF3-ChIP-Seq(GSE80564)/Homer	TGCCACGTSAYC	1e0	-1.983e-02	1.0000	388.0	2.64%	990.2	2.92%
bZIP69(bZIP)/col-bZIP69-DAP-Seq(GSE60143)/Homer	GACAGCTGKCAW	1e0	-1.933e-02	1.0000	121.0	0.82%	334.7	0.99%
ATHB24(ZFHD)/colamp-ATHB24-DAP-Seq(GSE60143)/Homer	TAATTAAS	1e0	-1.795e-02	1.0000	706.0	4.81%	1757.8	5.18%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-1.440e-02	1.0000	521.0	3.55%	1318.5	3.89%
MYB74(MYB)/colamp-MYB74-DAP-Seq(GSE60143)/Homer	YYYACCTACCWH	1e0	-1.184e-02	1.0000	601.0	4.09%	1515.9	4.47%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.162e-02	1.0000	63.0	0.43%	190.5	0.56%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.162e-02	1.0000	63.0	0.43%	190.5	0.56%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e0	-1.132e-02	1.0000	2052.0	13.97%	4958.1	14.62%
HY5(bZIP)/colamp-HY5-DAP-Seq(GSE60143)/Homer	RRTSACGTSD	1e0	-1.070e-02	1.0000	737.0	5.02%	1844.9	5.44%
TCP17(TCP)/col-TCP17-DAP-Seq(GSE60143)/Homer	GTGGTCCCCA	1e0	-1.006e-02	1.0000	69.0	0.47%	207.1	0.61%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-9.794e-03	1.0000	959.0	6.53%	2378.0	7.01%
ATHB34(ZFHD)/colamp-ATHB34-DAP-Seq(GSE60143)/Homer	TRATTARS	1e0	-9.432e-03	1.0000	752.0	5.12%	1883.9	5.56%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-9.425e-03	1.0000	256.0	1.74%	680.2	2.01%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-8.960e-03	1.0000	699.0	4.76%	1757.9	5.19%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-8.306e-03	1.0000	494.0	3.36%	1265.0	3.73%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-8.285e-03	1.0000	1295.0	8.81%	3181.2	9.38%
CCA(Myb)/Arabidopsis-CCA.GFP-ChIP-Seq(GSE70533)/Homer	AGATATYTTT	1e0	-7.473e-03	1.0000	674.0	4.59%	1701.7	5.02%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-7.307e-03	1.0000	428.0	2.91%	1106.8	3.26%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-7.294e-03	1.0000	168.0	1.14%	464.5	1.37%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-7.197e-03	1.0000	544.0	3.70%	1389.0	4.10%
At4g36780(BZR)/col-At4g36780-DAP-Seq(GSE60143)/Homer	NNNNNNCACGTGNNN	1e0	-6.306e-03	1.0000	307.0	2.09%	812.6	2.40%
AT3G57600(AP2EREBP)/col-AT3G57600-DAP-Seq(GSE60143)/Homer	GGCGGTGG	1e0	-6.066e-03	1.0000	1215.0	8.27%	3000.5	8.85%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-5.961e-03	1.0000	216.0	1.47%	587.1	1.73%
MYB4(MYB)/col200-MYB4-DAP-Seq(GSE60143)/Homer	WAGKTAGGTARR	1e0	-5.395e-03	1.0000	611.0	4.16%	1556.9	4.59%
WRKY46(WRKY)/colamp-WRKY46-DAP-Seq(GSE60143)/Homer	AAAGTCAACGSN	1e0	-5.284e-03	1.0000	39.0	0.27%	131.4	0.39%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-5.209e-03	1.0000	5024.0	34.19%	11933.9	35.20%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-4.928e-03	1.0000	1171.0	7.97%	2901.1	8.56%
BPC1(BBRBPC)/colamp-BPC1-DAP-Seq(GSE60143)/Homer	GARGAGAGAGAA	1e0	-4.833e-03	1.0000	697.0	4.74%	1766.5	5.21%
PIF7(bHLH)/col-PIF7-DAP-Seq(GSE60143)/Homer	CCACGTGGNH	1e0	-3.783e-03	1.0000	236.0	1.61%	643.7	1.90%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e0	-3.640e-03	1.0000	253.0	1.72%	686.2	2.02%
At5g05790(MYBrelated)/col-At5g05790-DAP-Seq(GSE60143)/Homer	AYCTTATC	1e0	-3.584e-03	1.0000	742.0	5.05%	1881.7	5.55%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e0	-3.532e-03	1.0000	365.0	2.48%	964.6	2.85%
DDF2(AP2EREBP)/col-DDF2-DAP-Seq(GSE60143)/Homer	GATGTCGRCR	1e0	-3.524e-03	1.0000	12.0	0.08%	54.6	0.16%
MYB13(MYB)/col-MYB13-DAP-Seq(GSE60143)/Homer	HYCACCWACCHH	1e0	-3.158e-03	1.0000	733.0	4.99%	1862.7	5.49%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-3.152e-03	1.0000	1604.0	10.92%	3943.4	11.63%
TCP16(TCP)/colamp-TCP16-DAP-Seq(GSE60143)/Homer	GTGGDCCYNNNNNNN	1e0	-3.143e-03	1.0000	1010.0	6.87%	2528.5	7.46%
bZIP3(bZIP)/col-bZIP3-DAP-Seq(GSE60143)/Homer	DWKNHSACGTGGCAD	1e0	-2.987e-03	1.0000	440.0	2.99%	1151.8	3.40%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-2.831e-03	1.0000	1265.0	8.61%	3140.8	9.26%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-2.646e-03	1.0000	113.0	0.77%	335.0	0.99%
At3g11280(MYBrelated)/col-At3g11280-DAP-Seq(GSE60143)/Homer	GATAAGRT	1e0	-2.337e-03	1.0000	706.0	4.81%	1803.8	5.32%
bZIP68(bZIP)/col-bZIP68-DAP-Seq(GSE60143)/Homer	WGCCACGTGK	1e0	-2.325e-03	1.0000	322.0	2.19%	864.2	2.55%
At1g78700(BZR)/col-At1g78700-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNNNNN	1e0	-2.113e-03	1.0000	313.0	2.13%	843.0	2.49%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-2.068e-03	1.0000	1397.0	9.51%	3463.3	10.22%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e0	-1.942e-03	1.0000	327.0	2.23%	879.8	2.60%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.461e-03	1.0000	1961.0	13.35%	4812.5	14.19%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-1.368e-03	1.0000	495.0	3.37%	1299.6	3.83%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e0	-1.159e-03	1.0000	1086.0	7.39%	2734.6	8.07%
ATAF1(NAC)/col-ATAF1-DAP-Seq(GSE60143)/Homer	YACGTMAY	1e0	-1.042e-03	1.0000	2503.0	17.04%	6104.0	18.00%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e0	-9.410e-04	1.0000	167.0	1.14%	484.4	1.43%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e0	-7.550e-04	1.0000	1094.0	7.45%	2763.3	8.15%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-7.340e-04	1.0000	1723.0	11.73%	4267.8	12.59%
FEA4(bZIP)/Corn-FEA4-ChIP-Seq(GSE61954)/Homer	TGACGTCACS	1e0	-6.710e-04	1.0000	1031.0	7.02%	2614.5	7.71%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-5.780e-04	1.0000	1772.0	12.06%	4390.3	12.95%
TCP20(TCP)/col-TCP20-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e0	-5.450e-04	1.0000	589.0	4.01%	1545.6	4.56%
O2(bZIP)/Corn-O2-ChIP-Seq(GSE63991)/Homer	GCTGACGTGGCA	1e0	-5.290e-04	1.0000	133.0	0.91%	401.9	1.19%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-4.010e-04	1.0000	580.0	3.95%	1528.6	4.51%
Knotted(Homeobox)/Corn-KN1-ChIP-Seq(GSE39161)/Homer	GAYGNGACRGGN	1e0	-3.730e-04	1.0000	1632.0	11.11%	4068.3	12.00%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-3.320e-04	1.0000	136.0	0.93%	414.0	1.22%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-3.070e-04	1.0000	946.0	6.44%	2425.2	7.15%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-2.730e-04	1.0000	1043.0	7.10%	2662.7	7.85%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e0	-2.670e-04	1.0000	2523.0	17.17%	6192.5	18.27%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-2.520e-04	1.0000	319.0	2.17%	886.8	2.62%
At1g72010(TCP)/colamp-At1g72010-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e0	-1.950e-04	1.0000	805.0	5.48%	2091.6	6.17%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-1.780e-04	1.0000	1570.0	10.69%	3938.5	11.62%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-1.330e-04	1.0000	1271.0	8.65%	3227.8	9.52%
VIP1(bZIP)/col-VIP1-DAP-Seq(GSE60143)/Homer	NTTGACAGCTGTCAN	1e0	-1.300e-04	1.0000	180.0	1.23%	537.2	1.58%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e0	-1.210e-04	1.0000	1283.0	8.73%	3258.8	9.61%
SeqBias: CA-repeat	CACACACACA	1e0	-1.200e-04	1.0000	6492.0	44.18%	15490.5	45.69%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e0	-1.180e-04	1.0000	502.0	3.42%	1354.4	3.99%
BIM2(bHLH)/col-BIM2-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNN	1e0	-4.200e-05	1.0000	830.0	5.65%	2179.8	6.43%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-3.200e-05	1.0000	589.0	4.01%	1589.2	4.69%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e0	-2.400e-05	1.0000	1379.0	9.39%	3523.7	10.39%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-2.300e-05	1.0000	2103.0	14.31%	5260.6	15.52%
At5g08330(TCP)/col-At5g08330-DAP-Seq(GSE60143)/Homer	GGRCCCAC	1e0	-2.200e-05	1.0000	967.0	6.58%	2525.9	7.45%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.600e-05	1.0000	2093.0	14.24%	5245.7	15.47%
TF3A(C2H2)/col-TF3A-DAP-Seq(GSE60143)/Homer	NNDDGAGGAGGWNNN	1e0	-3.000e-06	1.0000	1713.0	11.66%	4368.1	12.88%
ABI5(bZIP)/col-ABI5-DAP-Seq(GSE60143)/Homer	GCCACGTG	1e0	-2.000e-06	1.0000	413.0	2.81%	1182.9	3.49%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-2.000e-06	1.0000	323.0	2.20%	952.4	2.81%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e0	-0.000e+00	1.0000	1061.0	7.22%	2827.2	8.34%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-0.000e+00	1.0000	1563.0	10.64%	4115.0	12.14%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-0.000e+00	1.0000	216.0	1.47%	733.6	2.16%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-0.000e+00	1.0000	2999.0	20.41%	7688.6	22.68%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-0.000e+00	1.0000	2029.0	13.81%	5406.9	15.95%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	0.000e+00	1.0000	2231.0	15.18%	6052.9	17.85%
AT4G12670(MYBrelated)/col-AT4G12670-DAP-Seq(GSE60143)/Homer	AGGGTTTAGGGTTTA	1e0	0.000e+00	1.0000	0.0	0.00%	1.7	0.00%