Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 16579)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 32188)	% of Background Sequences with Motif
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-15730	-3.622e+04	0.0000	10917.0	65.85%	444.2	1.38%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-13009	-2.996e+04	0.0000	11128.0	67.12%	862.2	2.67%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-350	-8.065e+02	0.0000	400.0	2.41%	41.5	0.13%
E2FA(E2FDP)/colamp-E2FA-DAP-Seq(GSE60143)/Homer	WWTGGCGCCAWWWNN	1e-317	-7.313e+02	0.0000	1615.0	9.74%	1054.9	3.27%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-212	-4.884e+02	0.0000	2201.0	13.28%	2106.3	6.53%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-196	-4.534e+02	0.0000	2514.0	15.16%	2616.6	8.12%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-176	-4.075e+02	0.0000	2397.0	14.46%	2542.2	7.88%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-116	-2.691e+02	0.0000	5837.0	35.21%	8719.9	27.04%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-115	-2.670e+02	0.0000	4958.0	29.91%	7167.1	22.23%
SeqBias: CG bias	SSSSSSSSSS	1e-97	-2.256e+02	0.0000	13821.0	83.36%	24732.4	76.71%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-95	-2.198e+02	0.0000	3678.0	22.18%	5156.3	15.99%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-94	-2.165e+02	0.0000	8856.0	53.42%	14644.6	45.42%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-87	-2.008e+02	0.0000	6218.0	37.51%	9763.3	30.28%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-82	-1.896e+02	0.0000	4062.0	24.50%	5955.0	18.47%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-70	-1.627e+02	0.0000	2584.0	15.59%	3551.2	11.01%
bZIP18(bZIP)/colamp-bZIP18-DAP-Seq(GSE60143)/Homer	KGMCAGCTND	1e-62	-1.432e+02	0.0000	9516.0	57.40%	16419.4	50.92%
NGA4(ABI3VP1)/col-NGA4-DAP-Seq(GSE60143)/Homer	TKNTCAGGTG	1e-57	-1.327e+02	0.0000	5561.0	33.54%	8977.4	27.84%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-55	-1.274e+02	0.0000	5867.0	35.39%	9579.8	29.71%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-53	-1.237e+02	0.0000	3784.0	22.82%	5819.6	18.05%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-48	-1.122e+02	0.0000	3560.0	21.47%	5491.7	17.03%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e-48	-1.114e+02	0.0000	4031.0	24.31%	6337.5	19.66%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e-42	-9.849e+01	0.0000	1576.0	9.51%	2152.8	6.68%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e-41	-9.493e+01	0.0000	1754.0	10.58%	2463.3	7.64%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e-35	-8.102e+01	0.0000	301.0	1.82%	260.8	0.81%
SeqBias: polyC-repeat	CCCCCCCCCC	1e-33	-7.802e+01	0.0000	16422.0	99.05%	31538.9	97.82%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-33	-7.689e+01	0.0000	4549.0	27.44%	7537.3	23.38%
DEL2(E2FDP)/col-DEL2-DAP-Seq(GSE60143)/Homer	WTTTCSCGCC	1e-32	-7.432e+01	0.0000	737.0	4.45%	900.4	2.79%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e-31	-7.309e+01	0.0000	3967.0	23.93%	6502.6	20.17%
AZF1(C2H2)/colamp-AZF1-DAP-Seq(GSE60143)/Homer	DKSWCACT	1e-31	-7.207e+01	0.0000	8742.0	52.73%	15533.4	48.18%
At3g60580(C2H2)/col-At3g60580-DAP-Seq(GSE60143)/Homer	WTTYTACT	1e-31	-7.144e+01	0.0000	8403.0	50.68%	14882.3	46.16%
SeqBias: A/T bias	WWWWWWWWWW	1e-28	-6.540e+01	0.0000	11963.0	72.16%	21980.6	68.17%
SeqBias: polyA-repeat	AAAAAAAAAA	1e-27	-6.368e+01	0.0000	15988.0	96.44%	30507.8	94.62%
JGL(C2H2)/col-JGL-DAP-Seq(GSE60143)/Homer	ACYTTCAGTT	1e-25	-5.936e+01	0.0000	2463.0	14.86%	3898.4	12.09%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-23	-5.382e+01	0.0000	1147.0	6.92%	1647.8	5.11%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-22	-5.282e+01	0.0000	926.0	5.59%	1284.0	3.98%
MYB101(MYB)/colamp-MYB101-DAP-Seq(GSE60143)/Homer	TAACNRMY	1e-22	-5.224e+01	0.0000	2886.0	17.41%	4714.6	14.62%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-22	-5.152e+01	0.0000	6754.0	40.74%	11938.2	37.03%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-21	-5.010e+01	0.0000	2401.0	14.48%	3859.7	11.97%
Tal1	CATCTG	1e-20	-4.700e+01	0.0000	2423.0	14.61%	3924.0	12.17%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-20	-4.688e+01	0.0000	2374.0	14.32%	3837.0	11.90%
At5g62940(C2C2dof)/col-At5g62940-DAP-Seq(GSE60143)/Homer	WHWHHACTTTTT	1e-17	-3.984e+01	0.0000	5258.0	31.71%	9244.1	28.67%
At5g04390(C2H2)/col200-At5g04390-DAP-Seq(GSE60143)/Homer	AGTGANDN	1e-17	-3.962e+01	0.0000	8704.0	52.50%	15856.1	49.18%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e-17	-3.956e+01	0.0000	349.0	2.11%	415.6	1.29%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-17	-3.941e+01	0.0000	132.0	0.80%	110.6	0.34%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-16	-3.853e+01	0.0000	863.0	5.21%	1250.4	3.88%
AT5G47660(Trihelix)/colamp-AT5G47660-DAP-Seq(GSE60143)/Homer	AWTTTTACCG	1e-16	-3.832e+01	0.0000	2082.0	12.56%	3386.4	10.50%
MYB73(MYB)/col-MYB73-DAP-Seq(GSE60143)/Homer	NNNNHAACNGHHDHN	1e-16	-3.727e+01	0.0000	2635.0	15.89%	4397.9	13.64%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-16	-3.689e+01	0.0000	2778.0	16.76%	4662.4	14.46%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-15	-3.676e+01	0.0000	992.0	5.98%	1479.6	4.59%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-15	-3.608e+01	0.0000	1682.0	10.15%	2690.3	8.34%
CRF4(AP2EREBP)/colamp-CRF4-DAP-Seq(GSE60143)/Homer	CGCCGCCA	1e-15	-3.594e+01	0.0000	1136.0	6.85%	1732.1	5.37%
At1g75490(AP2EREBP)/colamp-At1g75490-DAP-Seq(GSE60143)/Homer	CACCGMCT	1e-15	-3.526e+01	0.0000	2586.0	15.60%	4328.4	13.42%
ASHR1(ND)/col-ASHR1-DAP-Seq(GSE60143)/Homer	NTGGTGAN	1e-14	-3.395e+01	0.0000	2070.0	12.49%	3404.6	10.56%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-14	-3.368e+01	0.0000	2183.0	13.17%	3611.2	11.20%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-14	-3.351e+01	0.0000	1341.0	8.09%	2107.4	6.54%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-14	-3.320e+01	0.0000	978.0	5.90%	1477.7	4.58%
ERF7(AP2EREBP)/col-ERF7-DAP-Seq(GSE60143)/Homer	ATGRCGGCGG	1e-13	-3.210e+01	0.0000	2032.0	12.26%	3353.7	10.40%
LBD18(LOBAS2)/colamp-LBD18-DAP-Seq(GSE60143)/Homer	CKGAWWTTCHGS	1e-13	-3.039e+01	0.0000	3779.0	22.79%	6590.4	20.44%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-13	-3.033e+01	0.0000	1084.0	6.54%	1680.6	5.21%
AT2G28810(C2C2dof)/colamp-AT2G28810-DAP-Seq(GSE60143)/Homer	VAAAAAGTWA	1e-12	-2.986e+01	0.0000	3644.0	21.98%	6345.6	19.68%
AT2G15740(C2H2)/col-AT2G15740-DAP-Seq(GSE60143)/Homer	DHNDWATCGATD	1e-12	-2.929e+01	0.0000	766.0	4.62%	1138.0	3.53%
AT1G28160(AP2EREBP)/colamp-AT1G28160-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e-12	-2.903e+01	0.0000	3175.0	19.15%	5483.3	17.01%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-12	-2.899e+01	0.0000	2722.0	16.42%	4646.4	14.41%
AT2G20110(CPP)/colamp-AT2G20110-DAP-Seq(GSE60143)/Homer	ATTYAAATHY	1e-12	-2.837e+01	0.0000	2049.0	12.36%	3422.0	10.61%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-11	-2.759e+01	0.0000	6359.0	38.36%	11518.1	35.72%
SOL1(CPP)/colamp-SOL1-DAP-Seq(GSE60143)/Homer	ATTTAAATHN	1e-11	-2.758e+01	0.0000	2129.0	12.84%	3575.3	11.09%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e-11	-2.721e+01	0.0000	11001.0	66.36%	20558.7	63.76%
CRF10(AP2EREBP)/col100-CRF10-DAP-Seq(GSE60143)/Homer	DCCGCCGYHA	1e-11	-2.697e+01	0.0000	2087.0	12.59%	3505.6	10.87%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-11	-2.642e+01	0.0000	1556.0	9.39%	2549.5	7.91%
AT1G47655(C2C2dof)/colamp-AT1G47655-DAP-Seq(GSE60143)/Homer	YHACTTTTTS	1e-11	-2.590e+01	0.0000	5359.0	32.32%	9637.6	29.89%
AT3G51470(DBP)/col-AT3G51470-DAP-Seq(GSE60143)/Homer	TTWHGGTGCACC	1e-11	-2.584e+01	0.0000	2170.0	13.09%	3669.0	11.38%
TCX2(CPP)/colamp-TCX2-DAP-Seq(GSE60143)/Homer	NNWWTTYRAAHN	1e-11	-2.575e+01	0.0000	2158.0	13.02%	3648.6	11.32%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-11	-2.554e+01	0.0000	898.0	5.42%	1390.7	4.31%
MYB88(MYB)/col-MYB88-DAP-Seq(GSE60143)/Homer	HNACGCTCCT	1e-10	-2.515e+01	0.0000	3666.0	22.11%	6452.0	20.01%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e-10	-2.515e+01	0.0000	784.0	4.73%	1195.8	3.71%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-10	-2.514e+01	0.0000	1889.0	11.39%	3164.5	9.81%
GTL1(Trihelix)/colamp-GTL1-DAP-Seq(GSE60143)/Homer	WWTTTACCKY	1e-10	-2.463e+01	0.0000	1557.0	9.39%	2568.1	7.96%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-10	-2.460e+01	0.0000	263.0	1.59%	331.3	1.03%
AT3G52440(C2C2dof)/colamp-AT3G52440-DAP-Seq(GSE60143)/Homer	DTHACTTTTT	1e-10	-2.450e+01	0.0000	3520.0	21.23%	6187.4	19.19%
SeqBias: C/A-bias	MMMMMMMMMM	1e-10	-2.425e+01	0.0000	16543.0	99.78%	32064.1	99.45%
AT1G20910(ARID)/col-AT1G20910-DAP-Seq(GSE60143)/Homer	THAATTRAWN	1e-10	-2.418e+01	0.0000	2087.0	12.59%	3536.7	10.97%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-10	-2.394e+01	0.0000	1176.0	7.09%	1892.5	5.87%
M1BP(Zf)/S2R+-M1BP-ChIP-Seq(GSE49842)/Homer	CAGTGTGACCGT	1e-9	-2.281e+01	0.0000	376.0	2.27%	519.1	1.61%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-9	-2.270e+01	0.0000	6234.0	37.60%	11364.4	35.25%
MYB65(MYB)/colamp-MYB65-DAP-Seq(GSE60143)/Homer	RACNGTTA	1e-9	-2.263e+01	0.0000	1500.0	9.05%	2485.4	7.71%
AT3G12130(C3H)/colamp-AT3G12130-DAP-Seq(GSE60143)/Homer	TMACTTTTTV	1e-9	-2.258e+01	0.0000	3785.0	22.83%	6713.5	20.82%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-9	-2.215e+01	0.0000	866.0	5.22%	1359.3	4.22%
At2g33710(AP2EREBP)/colamp-At2g33710-DAP-Seq(GSE60143)/Homer	WTKGCGGCKR	1e-9	-2.204e+01	0.0000	2785.0	16.80%	4851.9	15.05%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e-9	-2.187e+01	0.0000	328.0	1.98%	445.9	1.38%
MYB70(MYB)/col-MYB70-DAP-Seq(GSE60143)/Homer	WTAACNGTTA	1e-9	-2.182e+01	0.0000	1924.0	11.61%	3265.7	10.13%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-9	-2.181e+01	0.0000	1319.0	7.96%	2167.9	6.72%
AT5G02460(C2C2dof)/col-AT5G02460-DAP-Seq(GSE60143)/Homer	CHCCTTTT	1e-9	-2.167e+01	0.0000	3285.0	19.81%	5789.3	17.96%
CDF3(C2C2dof)/colamp-CDF3-DAP-Seq(GSE60143)/Homer	AAAAGTRM	1e-9	-2.133e+01	0.0000	2700.0	16.29%	4703.2	14.59%
GT2(Trihelix)/colamp-GT2-DAP-Seq(GSE60143)/Homer	AMGGTAAAWWWN	1e-9	-2.119e+01	0.0000	1483.0	8.95%	2469.3	7.66%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-9	-2.085e+01	0.0000	117.0	0.71%	123.2	0.38%
ATY13(MYB)/col-ATY13-DAP-Seq(GSE60143)/Homer	YYYAACYRHH	1e-8	-2.063e+01	0.0000	4907.0	29.60%	8868.7	27.51%
MYB51(MYB)/col-MYB51-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e-8	-2.063e+01	0.0000	1302.0	7.85%	2149.0	6.66%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-8	-2.056e+01	0.0000	1413.0	8.52%	2349.3	7.29%
AT5G05550(Trihelix)/col-AT5G05550-DAP-Seq(GSE60143)/Homer	HDNHDTCKCCGGMGA	1e-8	-2.035e+01	0.0000	2075.0	12.52%	3560.8	11.04%
MYB77(MYB)/col-MYB77-DAP-Seq(GSE60143)/Homer	NYAACBGYMC	1e-8	-1.991e+01	0.0000	1809.0	10.91%	3077.9	9.55%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-8	-1.978e+01	0.0000	3287.0	19.83%	5822.5	18.06%
MYB33(MYB)/col-MYB33-DAP-Seq(GSE60143)/Homer	DDTYNGTTAN	1e-8	-1.950e+01	0.0000	2350.0	14.17%	4079.4	12.65%
SeqBias: TA-repeat	TATATATATA	1e-8	-1.948e+01	0.0000	3448.0	20.80%	6129.5	19.01%
DEAR2(AP2EREBP)/colamp-DEAR2-DAP-Seq(GSE60143)/Homer	HCACCGACAWHD	1e-8	-1.948e+01	0.0000	1244.0	7.50%	2055.9	6.38%
At1g64620(C2C2dof)/colamp-At1g64620-DAP-Seq(GSE60143)/Homer	CACTTTTT	1e-8	-1.881e+01	0.0000	2286.0	13.79%	3970.5	12.31%
At5g18450(AP2EREBP)/col-At5g18450-DAP-Seq(GSE60143)/Homer	CACCGCTT	1e-8	-1.872e+01	0.0000	2712.0	16.36%	4763.6	14.77%
MYB55(MYB)/colamp-MYB55-DAP-Seq(GSE60143)/Homer	YACCWAMC	1e-8	-1.844e+01	0.0000	1505.0	9.08%	2539.5	7.88%
DREB19(AP2EREBP)/colamp-DREB19-DAP-Seq(GSE60143)/Homer	AATGTCGGTK	1e-7	-1.829e+01	0.0000	609.0	3.67%	939.2	2.91%
COG1(C2C2dof)/col-COG1-DAP-Seq(GSE60143)/Homer	DAAAAAGTGA	1e-7	-1.820e+01	0.0000	2174.0	13.11%	3771.8	11.70%
ERF15(AP2EREBP)/colamp-ERF15-DAP-Seq(GSE60143)/Homer	WDHAGCMGCCAT	1e-7	-1.806e+01	0.0000	3901.0	23.53%	7007.3	21.73%
MYB99(MYB)/colamp-MYB99-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e-7	-1.762e+01	0.0000	1303.0	7.86%	2181.7	6.77%
OBP1(C2C2dof)/col-OBP1-DAP-Seq(GSE60143)/Homer	NHHACTTTWT	1e-7	-1.738e+01	0.0000	4167.0	25.13%	7523.9	23.33%
HuR(?)/HEK293-HuR-CLIP-Seq(GSE87887)/Homer	BTTTGGTTTG	1e-7	-1.698e+01	0.0000	4849.0	29.25%	8827.9	27.38%
MYB81(MYB)/col-MYB81-DAP-Seq(GSE60143)/Homer	NWAACSGWTWNN	1e-7	-1.692e+01	0.0000	1889.0	11.39%	3262.7	10.12%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-7	-1.675e+01	0.0000	958.0	5.78%	1568.6	4.86%
OBP4(C2C2dof)/col-OBP4-DAP-Seq(GSE60143)/Homer	WTTHACTTTTTB	1e-7	-1.655e+01	0.0000	2101.0	12.67%	3659.6	11.35%
ABR1(AP2EREBP)/colamp-ABR1-DAP-Seq(GSE60143)/Homer	AAATGGCGGCGG	1e-7	-1.650e+01	0.0000	1389.0	8.38%	2350.1	7.29%
AT2G31460(REMB3)/col-AT2G31460-DAP-Seq(GSE60143)/Homer	WNWARWDGAAATGAT	1e-7	-1.640e+01	0.0000	473.0	2.85%	717.8	2.23%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-7	-1.639e+01	0.0000	4254.0	25.66%	7707.7	23.91%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-7	-1.631e+01	0.0000	1078.0	6.50%	1788.5	5.55%
AT3G10030(Trihelix)/colamp-AT3G10030-DAP-Seq(GSE60143)/Homer	GCCGTTAA	1e-6	-1.603e+01	0.0000	741.0	4.47%	1188.9	3.69%
RAP26(AP2EREBP)/colamp-RAP26-DAP-Seq(GSE60143)/Homer	HDATGGCGGCGG	1e-6	-1.597e+01	0.0000	1746.0	10.53%	3011.1	9.34%
ERF10(AP2EREBP)/col-ERF10-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e-6	-1.591e+01	0.0000	1200.0	7.24%	2013.7	6.25%
AT2G33550(Trihelix)/colamp-AT2G33550-DAP-Seq(GSE60143)/Homer	TTTAAGGGCAYTTTT	1e-6	-1.580e+01	0.0000	3009.0	18.15%	5366.8	16.64%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-6	-1.579e+01	0.0000	2491.0	15.03%	4396.2	13.63%
AT1G69570(C2C2dof)/col-AT1G69570-DAP-Seq(GSE60143)/Homer	WAAAAGTGHH	1e-6	-1.573e+01	0.0000	1786.0	10.77%	3088.6	9.58%
AT4G26030(C2H2)/col-AT4G26030-DAP-Seq(GSE60143)/Homer	BYYACCWACY	1e-6	-1.570e+01	0.0000	1380.0	8.32%	2343.7	7.27%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e-6	-1.543e+01	0.0000	773.0	4.66%	1250.2	3.88%
bHLH80(bHLH)/col-bHLH80-DAP-Seq(GSE60143)/Homer	NNNNDCAASTTGHNN	1e-6	-1.543e+01	0.0000	1376.0	8.30%	2339.8	7.26%
bHLH130(bHLH)/col-bHLH130-DAP-Seq(GSE60143)/Homer	GCAACTTG	1e-6	-1.531e+01	0.0000	1019.0	6.15%	1692.6	5.25%
TCP1(TCP)/col-TCP1-DAP-Seq(GSE60143)/Homer	GGGGGCCCMMCN	1e-6	-1.507e+01	0.0000	887.0	5.35%	1457.1	4.52%
AT5G23930(mTERF)/col-AT5G23930-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e-6	-1.497e+01	0.0000	3323.0	20.04%	5972.9	18.52%
dof45(C2C2dof)/col-dof45-DAP-Seq(GSE60143)/Homer	NVAWAAAGTN	1e-6	-1.497e+01	0.0000	3695.0	22.29%	6675.4	20.70%
WIP5(C2H2)/colamp-WIP5-DAP-Seq(GSE60143)/Homer	TDTTCTCMAGGT	1e-6	-1.488e+01	0.0000	1939.0	11.70%	3383.6	10.49%
ERF11(AP2EREBP)/col-ERF11-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e-6	-1.480e+01	0.0000	1374.0	8.29%	2343.3	7.27%
OBP3(C2C2dof)/col-OBP3-DAP-Seq(GSE60143)/Homer	NYWACTTTTT	1e-6	-1.463e+01	0.0000	4655.0	28.08%	8506.9	26.38%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-6	-1.458e+01	0.0000	520.0	3.14%	811.3	2.52%
MYB107(MYB)/col-MYB107-DAP-Seq(GSE60143)/Homer	RGTWGGTRRR	1e-6	-1.450e+01	0.0000	2309.0	13.93%	4077.0	12.64%
LBD19(LOBAS2)/colamp-LBD19-DAP-Seq(GSE60143)/Homer	CCKGAAWTTCMGGAW	1e-6	-1.433e+01	0.0000	2656.0	16.02%	4729.6	14.67%
ERF105(AP2EREBP)/colamp-ERF105-DAP-Seq(GSE60143)/Homer	TGGCGGCT	1e-6	-1.433e+01	0.0000	2460.0	14.84%	4362.5	13.53%
dof24(C2C2dof)/col-dof24-DAP-Seq(GSE60143)/Homer	TWMCTTTTTG	1e-6	-1.428e+01	0.0000	3078.0	18.57%	5523.1	17.13%
SeqBias: G/A bias	RRRRRRRRRR	1e-6	-1.420e+01	0.0000	16563.0	99.90%	32155.5	99.73%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e-6	-1.419e+01	0.0000	1008.0	6.08%	1684.5	5.22%
STZ(C2H2)/colamp-STZ-DAP-Seq(GSE60143)/Homer	HNBTCACT	1e-6	-1.401e+01	0.0000	8617.0	51.98%	16157.4	50.11%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-6	-1.390e+01	0.0000	1062.0	6.41%	1785.6	5.54%
ESE1(AP2EREBP)/col-ESE1-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e-6	-1.389e+01	0.0000	1544.0	9.31%	2667.3	8.27%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-6	-1.382e+01	0.0000	2623.0	15.82%	4676.8	14.50%
ERF115(AP2EREBP)/colamp-ERF115-DAP-Seq(GSE60143)/Homer	WTKRCGGCGB	1e-5	-1.382e+01	0.0000	2372.0	14.31%	4206.5	13.05%
WRKY15(WRKY)/col-WRKY15-DAP-Seq(GSE60143)/Homer	VGTTGACTWW	1e-5	-1.363e+01	0.0000	1084.0	6.54%	1828.2	5.67%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e-5	-1.353e+01	0.0000	16563.0	99.90%	32157.4	99.73%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-5	-1.350e+01	0.0000	866.0	5.22%	1435.6	4.45%
MYB67(MYB)/col-MYB67-DAP-Seq(GSE60143)/Homer	YYYACCTAAC	1e-5	-1.348e+01	0.0000	1295.0	7.81%	2215.7	6.87%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e-5	-1.347e+01	0.0000	1248.0	7.53%	2129.4	6.60%
WRKY75(WRKY)/col-WRKY75-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e-5	-1.341e+01	0.0000	1049.0	6.33%	1767.7	5.48%
At4g38000(C2C2dof)/col-At4g38000-DAP-Seq(GSE60143)/Homer	WWWTWACTTTTT	1e-5	-1.337e+01	0.0000	1591.0	9.60%	2761.6	8.57%
LBD23(LOBAS2)/colamp-LBD23-DAP-Seq(GSE60143)/Homer	GCGNAWWWTNCGCYW	1e-5	-1.332e+01	0.0000	1313.0	7.92%	2250.6	6.98%
At5g08750(C3H)/col-At5g08750-DAP-Seq(GSE60143)/Homer	NWDTTGCGGCTR	1e-5	-1.328e+01	0.0000	557.0	3.36%	886.3	2.75%
Adof1(C2C2dof)/col-Adof1-DAP-Seq(GSE60143)/Homer	NRWAAAGYDV	1e-5	-1.315e+01	0.0000	4059.0	24.48%	7403.9	22.96%
WRKY20(WRKY)/col-WRKY20-DAP-Seq(GSE60143)/Homer	CKTTGACYWD	1e-5	-1.303e+01	0.0000	840.0	5.07%	1393.8	4.32%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-5	-1.299e+01	0.0000	2196.0	13.25%	3891.6	12.07%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-5	-1.297e+01	0.0000	489.0	2.95%	769.9	2.39%
At2g41835(C2H2)/col-At2g41835-DAP-Seq(GSE60143)/Homer	TTTGAAAA	1e-5	-1.294e+01	0.0000	775.0	4.67%	1277.5	3.96%
MYB58(MYB)/colamp-MYB58-DAP-Seq(GSE60143)/Homer	YYYACCWACC	1e-5	-1.287e+01	0.0000	1306.0	7.88%	2243.8	6.96%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-5	-1.279e+01	0.0000	1418.0	8.55%	2451.0	7.60%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-5	-1.270e+01	0.0000	1793.0	10.81%	3145.3	9.76%
WRKY25(WRKY)/colamp-WRKY25-DAP-Seq(GSE60143)/Homer	NNNNHRGTCAAMNNN	1e-5	-1.256e+01	0.0000	1234.0	7.44%	2116.0	6.56%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-5	-1.229e+01	0.0000	1976.0	11.92%	3492.4	10.83%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-5	-1.221e+01	0.0000	1027.0	6.19%	1741.5	5.40%
ERF4(AP2EREBP)/colamp-ERF4-DAP-Seq(GSE60143)/Homer	WDWTGGCGGCGG	1e-5	-1.208e+01	0.0000	1522.0	9.18%	2652.8	8.23%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-5	-1.207e+01	0.0000	1438.0	8.67%	2497.3	7.75%
AT4G37180(G2like)/col-AT4G37180-DAP-Seq(GSE60143)/Homer	AGAATCTTNN	1e-5	-1.204e+01	0.0000	1704.0	10.28%	2990.4	9.27%
MYB30(MYB)/colamp-MYB30-DAP-Seq(GSE60143)/Homer	AGGTAGTTGG	1e-5	-1.200e+01	0.0000	1659.0	10.01%	2907.9	9.02%
ERF13(AP2EREBP)/colamp-ERF13-DAP-Seq(GSE60143)/Homer	TYAGCCGCCATT	1e-5	-1.185e+01	0.0000	1725.0	10.40%	3032.8	9.41%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e-5	-1.182e+01	0.0000	2944.0	17.76%	5318.9	16.50%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-5	-1.171e+01	0.0000	175.0	1.06%	241.4	0.75%
AT1G76870(Trihelix)/col-AT1G76870-DAP-Seq(GSE60143)/Homer	AAAACCRGWW	1e-5	-1.160e+01	0.0000	532.0	3.21%	856.2	2.66%
DAG2(C2C2dof)/col-DAG2-DAP-Seq(GSE60143)/Homer	WWTTHACTTTTT	1e-4	-1.139e+01	0.0001	2422.0	14.61%	4343.7	13.47%
At1g76110(ARID)/colamp-At1g76110-DAP-Seq(GSE60143)/Homer	ATTTAATG	1e-4	-1.139e+01	0.0001	817.0	4.93%	1369.9	4.25%
At1g36060(AP2EREBP)/colamp-At1g36060-DAP-Seq(GSE60143)/Homer	NNWWKGTCGGTG	1e-4	-1.136e+01	0.0001	736.0	4.44%	1223.3	3.79%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e-4	-1.134e+01	0.0001	427.0	2.58%	673.8	2.09%
CDM1(C3H)/colamp-CDM1-DAP-Seq(GSE60143)/Homer	CCGAWAWTWTCGGAN	1e-4	-1.125e+01	0.0001	103.0	0.62%	128.2	0.40%
ERF8(AP2EREBP)/colamp-ERF8-DAP-Seq(GSE60143)/Homer	CGCCGYCATW	1e-4	-1.117e+01	0.0001	1527.0	9.21%	2676.0	8.30%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-4	-1.114e+01	0.0001	925.0	5.58%	1568.1	4.86%
AT2G40260(G2like)/colamp-AT2G40260-DAP-Seq(GSE60143)/Homer	WAAAYATTCTTT	1e-4	-1.108e+01	0.0001	2232.0	13.46%	3992.7	12.38%
AT5G63260(C3H)/col-AT5G63260-DAP-Seq(GSE60143)/Homer	RAAAAAGTRA	1e-4	-1.107e+01	0.0001	3549.0	21.41%	6480.7	20.10%
BBX31(Orphan)/col-BBX31-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e-4	-1.105e+01	0.0001	2302.0	13.89%	4124.3	12.79%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-4	-1.082e+01	0.0001	2183.0	13.17%	3905.2	12.11%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-4	-1.081e+01	0.0001	2752.0	16.60%	4976.9	15.44%
WRKY33(WRKY)/col-WRKY33-DAP-Seq(GSE60143)/Homer	CGTTGACYAW	1e-4	-1.074e+01	0.0001	846.0	5.10%	1429.3	4.43%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-4	-1.068e+01	0.0001	894.0	5.39%	1517.1	4.71%
bHLH122(bHLH)/col100-bHLH122-DAP-Seq(GSE60143)/Homer	NDDCAASTTGHHNWW	1e-4	-1.064e+01	0.0001	1152.0	6.95%	1990.4	6.17%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-4	-1.057e+01	0.0001	2404.0	14.50%	4325.1	13.41%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-4	-1.049e+01	0.0001	681.0	4.11%	1133.5	3.52%
AT5G66940(C2C2dof)/col-AT5G66940-DAP-Seq(GSE60143)/Homer	NNHACTTTWT	1e-4	-1.049e+01	0.0001	2941.0	17.74%	5340.4	16.56%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-4	-1.049e+01	0.0001	1172.0	7.07%	2029.4	6.29%
SRS7(SRS)/colamp-SRS7-DAP-Seq(GSE60143)/Homer	HATAGGTTTH	1e-4	-1.042e+01	0.0001	4749.0	28.64%	8785.0	27.25%
CEJ1(AP2EREBP)/col-CEJ1-DAP-Seq(GSE60143)/Homer	WWTGTCGGTG	1e-4	-1.032e+01	0.0002	1056.0	6.37%	1818.2	5.64%
ATHB13(Homeobox)/col-ATHB13-DAP-Seq(GSE60143)/Homer	CAATAATT	1e-4	-1.027e+01	0.0002	1424.0	8.59%	2498.4	7.75%
ASL18(LOBAS2)/colamp-ASL18-DAP-Seq(GSE60143)/Homer	CCGGAAAWTCMGGAR	1e-4	-1.021e+01	0.0002	2571.0	15.51%	4647.4	14.41%
DREB2(AP2EREBP)/col-DREB2-DAP-Seq(GSE60143)/Homer	TMACCGACATWA	1e-4	-1.015e+01	0.0002	460.0	2.77%	741.2	2.30%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-4	-1.001e+01	0.0002	772.0	4.66%	1303.8	4.04%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-4	-9.978e+00	0.0002	1265.0	7.63%	2208.2	6.85%
AT2G38300(G2like)/col-AT2G38300-DAP-Seq(GSE60143)/Homer	ADRGAATGTT	1e-4	-9.831e+00	0.0002	1923.0	11.60%	3436.8	10.66%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-4	-9.746e+00	0.0003	1577.0	9.51%	2791.0	8.66%
At3g45610(C2C2dof)/col-At3g45610-DAP-Seq(GSE60143)/Homer	TWACTTTTTS	1e-4	-9.469e+00	0.0003	2176.0	13.13%	3918.1	12.15%
AT1G77200(AP2EREBP)/colamp-AT1G77200-DAP-Seq(GSE60143)/Homer	ACCGACAHWD	1e-4	-9.427e+00	0.0004	744.0	4.49%	1259.2	3.91%
At1g22810(AP2EREBP)/colamp-At1g22810-DAP-Seq(GSE60143)/Homer	BCACCGACANNN	1e-4	-9.425e+00	0.0004	462.0	2.79%	751.4	2.33%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e-4	-9.342e+00	0.0004	1853.0	11.18%	3314.4	10.28%
WRKY18(WRKY)/col-WRKY18-DAP-Seq(GSE60143)/Homer	NNNTTGACYWNNNNN	1e-4	-9.258e+00	0.0004	1938.0	11.69%	3475.4	10.78%
ERF5(AP2EREBP)/colamp-ERF5-DAP-Seq(GSE60143)/Homer	DCMGCCGCCA	1e-4	-9.219e+00	0.0004	832.0	5.02%	1423.0	4.41%
SeqBias: GA-repeat	GAGAGAGAGA	1e-3	-9.163e+00	0.0005	10432.0	62.92%	19836.2	61.52%
WRKY28(WRKY)/col-WRKY28-DAP-Seq(GSE60143)/Homer	BGTTGACTWH	1e-3	-9.146e+00	0.0005	1440.0	8.69%	2546.6	7.90%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-3	-9.133e+00	0.0005	1098.0	6.62%	1912.3	5.93%
MYB93(MYB)/colamp-MYB93-DAP-Seq(GSE60143)/Homer	GGTAGGTGRD	1e-3	-9.081e+00	0.0005	1596.0	9.63%	2838.1	8.80%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-3	-9.033e+00	0.0005	406.0	2.45%	655.6	2.03%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-3	-8.998e+00	0.0005	331.0	2.00%	523.4	1.62%
REM19(REM)/colamp-REM19-DAP-Seq(GSE60143)/Homer	AAAAAAAA	1e-3	-8.627e+00	0.0008	382.0	2.30%	616.5	1.91%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-3	-8.625e+00	0.0008	1069.0	6.45%	1866.3	5.79%
MYB119(MYB)/colamp-MYB119-DAP-Seq(GSE60143)/Homer	YRACCGTTACDD	1e-3	-8.603e+00	0.0008	307.0	1.85%	484.0	1.50%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-3	-8.552e+00	0.0008	83.0	0.50%	106.4	0.33%
AT1G12630(AP2EREBP)/colamp-AT1G12630-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e-3	-8.546e+00	0.0008	527.0	3.18%	876.8	2.72%
AT4G27900(C2C2COlike)/col-AT4G27900-DAP-Seq(GSE60143)/Homer	TCTCVACCGTTSATT	1e-3	-8.539e+00	0.0008	5.0	0.03%	1.6	0.00%
AT1G76880(Trihelix)/col-AT1G76880-DAP-Seq(GSE60143)/Homer	ACGGTAAAAW	1e-3	-8.429e+00	0.0009	445.0	2.68%	730.1	2.26%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e-3	-8.393e+00	0.0009	152.0	0.92%	219.9	0.68%
SPL15(SBP)/colamp-SPL15-DAP-Seq(GSE60143)/Homer	WDWMMGTACADW	1e-3	-8.293e+00	0.0010	1545.0	9.32%	2757.9	8.55%
MYB61(MYB)/colamp-MYB61-DAP-Seq(GSE60143)/Homer	HCYACCTACC	1e-3	-8.275e+00	0.0010	2054.0	12.39%	3713.4	11.52%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-3	-8.213e+00	0.0011	985.0	5.94%	1718.0	5.33%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e-3	-8.185e+00	0.0011	3048.0	18.38%	5597.7	17.36%
WRKY55(WRKY)/col-WRKY55-DAP-Seq(GSE60143)/Homer	NCGTTGACTT	1e-3	-8.179e+00	0.0011	1284.0	7.74%	2272.5	7.05%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-3	-8.149e+00	0.0012	1428.0	8.61%	2541.5	7.88%
DEL1(E2FDP)/colamp-DEL1-DAP-Seq(GSE60143)/Homer	TTCCCGCCAA	1e-3	-8.145e+00	0.0012	9.0	0.05%	4.9	0.02%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-3	-8.080e+00	0.0012	229.0	1.38%	352.2	1.09%
WRKY24(WRKY)/colamp-WRKY24-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e-3	-8.048e+00	0.0013	904.0	5.45%	1570.1	4.87%
ERF3(AP2EREBP)/colamp-ERF3-DAP-Seq(GSE60143)/Homer	ATGGCGGCGG	1e-3	-8.044e+00	0.0013	1055.0	6.36%	1849.6	5.74%
AtHB32(ZFHD)/col200-AtHB32-DAP-Seq(GSE60143)/Homer	CGAATTAT	1e-3	-8.034e+00	0.0013	1536.0	9.26%	2745.5	8.52%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-3	-7.943e+00	0.0014	735.0	4.43%	1261.5	3.91%
LMI1(HB)/colamp-LMI1-DAP-Seq(GSE60143)/Homer	AATTATTG	1e-3	-7.936e+00	0.0014	908.0	5.48%	1579.7	4.90%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-3	-7.905e+00	0.0014	1160.0	7.00%	2046.7	6.35%
AT1G71450(AP2EREBP)/col-AT1G71450-DAP-Seq(GSE60143)/Homer	DHDWTGTCGGTG	1e-3	-7.877e+00	0.0015	1972.0	11.89%	3567.8	11.07%
AT5G60130(ABI3VP1)/col-AT5G60130-DAP-Seq(GSE60143)/Homer	WTTYTAAGVAAA	1e-3	-7.874e+00	0.0015	2611.0	15.75%	4775.9	14.81%
ERF104(AP2EREBP)/col-ERF104-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e-3	-7.816e+00	0.0015	1855.0	11.19%	3348.2	10.38%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e-3	-7.780e+00	0.0016	4721.0	28.48%	8806.5	27.31%
MYB98(MYB)/col-MYB98-DAP-Seq(GSE60143)/Homer	NWDCCGTTAC	1e-3	-7.587e+00	0.0019	325.0	1.96%	524.6	1.63%
At3g12730(G2like)/colamp-At3g12730-DAP-Seq(GSE60143)/Homer	AAGATTCT	1e-3	-7.584e+00	0.0019	2010.0	12.12%	3645.8	11.31%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e-3	-7.567e+00	0.0019	525.0	3.17%	883.0	2.74%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-3	-7.538e+00	0.0020	284.0	1.71%	452.8	1.40%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-3	-7.519e+00	0.0020	4150.0	25.03%	7719.7	23.94%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-3	-7.497e+00	0.0021	1067.0	6.44%	1880.3	5.83%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-3	-7.490e+00	0.0021	93.0	0.56%	126.6	0.39%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-3	-7.470e+00	0.0021	38.0	0.23%	41.2	0.13%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-3	-7.407e+00	0.0022	855.0	5.16%	1489.8	4.62%
WRKY6(WRKY)/colamp-WRKY6-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWD	1e-3	-7.401e+00	0.0022	921.0	5.56%	1611.7	5.00%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-3	-7.380e+00	0.0023	1557.0	9.39%	2797.3	8.68%
RAP211(AP2EREBP)/colamp-RAP211-DAP-Seq(GSE60143)/Homer	RGCCGGCYWW	1e-3	-7.379e+00	0.0023	3826.0	23.08%	7103.6	22.03%
WRKY29(WRKY)/colamp-WRKY29-DAP-Seq(GSE60143)/Homer	MGTTGACTTT	1e-3	-7.343e+00	0.0023	1092.0	6.59%	1929.9	5.99%
NAP(NAC)/col-NAP-DAP-Seq(GSE60143)/Homer	ARGTTACGTRTN	1e-3	-7.297e+00	0.0024	905.0	5.46%	1583.5	4.91%
dof43(C2C2dof)/colamp-dof43-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e-3	-7.257e+00	0.0025	2085.0	12.58%	3794.3	11.77%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-3	-7.124e+00	0.0029	240.0	1.45%	378.5	1.17%
AGL63(MADS)/col-AGL63-DAP-Seq(GSE60143)/Homer	TTCCAAWWWTGG	1e-3	-7.105e+00	0.0029	1121.0	6.76%	1987.6	6.16%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-3	-7.085e+00	0.0030	1792.0	10.81%	3245.6	10.07%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-3	-7.012e+00	0.0032	208.0	1.25%	323.6	1.00%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-3	-6.971e+00	0.0033	1304.0	7.87%	2331.4	7.23%
At1g25550(G2like)/colamp-At1g25550-DAP-Seq(GSE60143)/Homer	NAGATTCY	1e-3	-6.970e+00	0.0033	1535.0	9.26%	2765.0	8.58%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-2	-6.896e+00	0.0035	873.0	5.27%	1530.8	4.75%
PUCHI(AP2EREBP)/colamp-PUCHI-DAP-Seq(GSE60143)/Homer	GCGCCGTY	1e-2	-6.826e+00	0.0038	1210.0	7.30%	2158.4	6.69%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-2	-6.797e+00	0.0039	191.0	1.15%	295.6	0.92%
ATHB6(Homeobox)/col-ATHB6-DAP-Seq(GSE60143)/Homer	AATGATTG	1e-2	-6.729e+00	0.0041	1510.0	9.11%	2722.5	8.44%
WRKY31(WRKY)/colamp-WRKY31-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWK	1e-2	-6.723e+00	0.0041	727.0	4.39%	1263.3	3.92%
MYB41(MYB)/col-MYB41-DAP-Seq(GSE60143)/Homer	BYTYACCTAA	1e-2	-6.677e+00	0.0043	550.0	3.32%	939.9	2.92%
CBF1(AP2EREBP)/colamp-CBF1-DAP-Seq(GSE60143)/Homer	YRCCGACATN	1e-2	-6.658e+00	0.0044	658.0	3.97%	1137.3	3.53%
ERF73(AP2EREBP)/col-ERF73-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e-2	-6.637e+00	0.0045	1315.0	7.93%	2358.9	7.32%
At1g19210(AP2EREBP)/colamp-At1g19210-DAP-Seq(GSE60143)/Homer	HCACCGACCAHN	1e-2	-6.599e+00	0.0046	1541.0	9.29%	2783.2	8.63%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-2	-6.549e+00	0.0048	299.0	1.80%	487.4	1.51%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-2	-6.501e+00	0.0051	1273.0	7.68%	2282.1	7.08%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-2	-6.495e+00	0.0051	215.0	1.30%	339.2	1.05%
WRKY50(WRKY)/col-WRKY50-DAP-Seq(GSE60143)/Homer	NNTTGACTWNNGNNN	1e-2	-6.466e+00	0.0052	1185.0	7.15%	2118.5	6.57%
bZIP52(bZIP)/colamp-bZIP52-DAP-Seq(GSE60143)/Homer	NDNHCAGCTGTCANN	1e-2	-6.411e+00	0.0055	1929.0	11.64%	3519.6	10.92%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e-2	-6.398e+00	0.0055	1410.0	8.50%	2541.8	7.88%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-2	-6.320e+00	0.0059	952.0	5.74%	1686.7	5.23%
RRTF1(AP2EREBP)/colamp-RRTF1-DAP-Seq(GSE60143)/Homer	CCGCCGCHATTT	1e-2	-6.273e+00	0.0062	265.0	1.60%	429.7	1.33%
AT1G49560(G2like)/colamp-AT1G49560-DAP-Seq(GSE60143)/Homer	GAWTCTNWDA	1e-2	-6.253e+00	0.0063	1863.0	11.24%	3399.0	10.54%
MYB17(MYB)/colamp-MYB17-DAP-Seq(GSE60143)/Homer	GGTAGGTGRG	1e-2	-6.247e+00	0.0063	848.0	5.11%	1494.9	4.64%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e-2	-6.210e+00	0.0065	101.0	0.61%	145.3	0.45%
GATA4(C2C2gata)/col-GATA4-DAP-Seq(GSE60143)/Homer	DDWTYAGATCTR	1e-2	-6.203e+00	0.0066	860.0	5.19%	1517.5	4.71%
ERF2(AP2EREBP)/colamp-ERF2-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e-2	-6.200e+00	0.0066	1321.0	7.97%	2379.0	7.38%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-2	-6.123e+00	0.0071	1237.0	7.46%	2222.3	6.89%
ATHB40(HB)/col-ATHB40-DAP-Seq(GSE60143)/Homer	HCAATWATTG	1e-2	-6.108e+00	0.0071	1001.0	6.04%	1781.4	5.52%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-2	-6.072e+00	0.0074	255.0	1.54%	413.3	1.28%
MYB3R1(MYB)/col-MYB3R1-DAP-Seq(GSE60143)/Homer	WWDTDACCGTTR	1e-2	-6.072e+00	0.0074	264.0	1.59%	429.7	1.33%
At1g68670(G2like)/colamp-At1g68670-DAP-Seq(GSE60143)/Homer	WNWWHNRAAGATTCT	1e-2	-5.984e+00	0.0080	611.0	3.69%	1060.5	3.29%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-2	-5.906e+00	0.0086	63.0	0.38%	84.3	0.26%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e-2	-5.904e+00	0.0086	2435.0	14.69%	4492.2	13.93%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-2	-5.880e+00	0.0088	315.0	1.90%	522.4	1.62%
WUS1(Homeobox)/colamp-WUS1-DAP-Seq(GSE60143)/Homer	CAWTCATTCA	1e-2	-5.799e+00	0.0095	487.0	2.94%	835.3	2.59%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-2	-5.677e+00	0.0107	3386.0	20.42%	6314.4	19.58%
AT3G25990(Trihelix)/colamp-AT3G25990-DAP-Seq(GSE60143)/Homer	TTAACCATAG	1e-2	-5.664e+00	0.0108	861.0	5.19%	1528.6	4.74%
LBD2(LOBAS2)/colamp-LBD2-DAP-Seq(GSE60143)/Homer	TCCGAWTTTTTCGGN	1e-2	-5.626e+00	0.0112	298.0	1.80%	494.5	1.53%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-2	-5.539e+00	0.0122	59.0	0.36%	79.7	0.25%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-2	-5.525e+00	0.0123	168.0	1.01%	264.8	0.82%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e-2	-5.507e+00	0.0125	294.0	1.77%	488.1	1.51%
CELF2(RRM)/JSL1-CELF2-CLIP-Seq(GSE71264)/Homer	RGTGTCAG	1e-2	-5.466e+00	0.0129	495.0	2.99%	854.9	2.65%
HDG1(Homeobox)/col100-HDG1-DAP-Seq(GSE60143)/Homer	DDYAATTAATGH	1e-2	-5.450e+00	0.0131	669.0	4.04%	1176.0	3.65%
NAM(NAC)/col-NAM-DAP-Seq(GSE60143)/Homer	RGTTRCGTRW	1e-2	-5.364e+00	0.0142	1218.0	7.35%	2202.3	6.83%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-2	-5.344e+00	0.0145	416.0	2.51%	711.3	2.21%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-2	-5.291e+00	0.0152	1043.0	6.29%	1875.3	5.82%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-2	-5.278e+00	0.0154	480.0	2.90%	829.3	2.57%
AT3G60490(AP2EREBP)/colamp-AT3G60490-DAP-Seq(GSE60143)/Homer	NNRCCGACANNNNNN	1e-2	-5.218e+00	0.0163	259.0	1.56%	429.0	1.33%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-2	-5.204e+00	0.0165	438.0	2.64%	753.3	2.34%
MYB56(MYB)/colamp-MYB56-DAP-Seq(GSE60143)/Homer	HTAACGRMHY	1e-2	-5.184e+00	0.0167	973.0	5.87%	1746.8	5.42%
RAP212(AP2EREBP)/col-RAP212-DAP-Seq(GSE60143)/Homer	CGCCGCCATTTT	1e-2	-5.112e+00	0.0179	1048.0	6.32%	1888.2	5.86%
AT5G45580(G2like)/colamp-AT5G45580-DAP-Seq(GSE60143)/Homer	ADRGAATCTH	1e-2	-5.109e+00	0.0179	2216.0	13.37%	4098.1	12.71%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-2	-5.061e+00	0.0187	1380.0	8.32%	2514.7	7.80%
NLP7(RWPRK)/col-NLP7-DAP-Seq(GSE60143)/Homer	TGRCCYTTCR	1e-2	-5.048e+00	0.0189	3130.0	18.88%	5845.3	18.13%
TSO1(CPP)/col-TSO1-DAP-Seq(GSE60143)/Homer	RAATTTRAAW	1e-2	-5.046e+00	0.0189	201.0	1.21%	326.5	1.01%
MYB118(MYB)/colamp-MYB118-DAP-Seq(GSE60143)/Homer	TAWCCGTTAC	1e-2	-5.038e+00	0.0190	309.0	1.86%	520.3	1.61%
WRKY3(WRKY)/col-WRKY3-DAP-Seq(GSE60143)/Homer	NCKTTGACYDDN	1e-2	-5.001e+00	0.0196	636.0	3.84%	1121.1	3.48%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-2	-5.001e+00	0.0196	424.0	2.56%	730.1	2.26%
ATHB53(HB)/col-ATHB53-DAP-Seq(GSE60143)/Homer	CAATAATT	1e-2	-4.974e+00	0.0201	646.0	3.90%	1140.2	3.54%
ANAC045(NAC)/col-ANAC045-DAP-Seq(GSE60143)/Homer	DNCKTVNNNNNNAMG	1e-2	-4.943e+00	0.0206	2713.0	16.36%	5051.6	15.67%
bHLH10(bHLH)/colamp-bHLH10-DAP-Seq(GSE60143)/Homer	YACCGACA	1e-2	-4.937e+00	0.0207	268.0	1.62%	447.8	1.39%
LBD13(LOBAS2)/colamp-LBD13-DAP-Seq(GSE60143)/Homer	KCCGTNWTTTBCGGC	1e-2	-4.909e+00	0.0212	1133.0	6.83%	2052.5	6.37%
MYB92(MYB)/colamp-MYB92-DAP-Seq(GSE60143)/Homer	GGTAGGTR	1e-2	-4.851e+00	0.0224	1453.0	8.76%	2657.9	8.24%
ERF1(AP2EREBP)/colamp-ERF1-DAP-Seq(GSE60143)/Homer	GGCGGCTR	1e-2	-4.810e+00	0.0232	1160.0	7.00%	2105.1	6.53%
SPL9(SBP)/colamp-SPL9-DAP-Seq(GSE60143)/Homer	BTGTACTT	1e-2	-4.782e+00	0.0238	2593.0	15.64%	4827.9	14.97%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e-2	-4.735e+00	0.0249	1192.0	7.19%	2167.4	6.72%
TGA10(bZIP)/colamp-TGA10-DAP-Seq(GSE60143)/Homer	ATGACGTC	1e-2	-4.715e+00	0.0254	606.0	3.66%	1070.5	3.32%
SeqBias: CG-repeat	CGCGCGCGCG	1e-2	-4.713e+00	0.0254	3150.0	19.00%	5895.8	18.29%
At1g13300(G2like)/col-At1g13300-DAP-Seq(GSE60143)/Homer	GAATCTWAGATTCYN	1e-1	-4.559e+00	0.0295	16.0	0.10%	16.4	0.05%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e-1	-4.535e+00	0.0301	36.0	0.22%	46.1	0.14%
CBF3(AP2EREBP)/colamp-CBF3-DAP-Seq(GSE60143)/Homer	YNRCCGACATNN	1e-1	-4.517e+00	0.0305	421.0	2.54%	731.6	2.27%
DEAR3(AP2EREBP)/colamp-DEAR3-DAP-Seq(GSE60143)/Homer	BCACCGACAWNNNNN	1e-1	-4.508e+00	0.0307	287.0	1.73%	486.7	1.51%
TBP3(MYBrelated)/col-TBP3-DAP-Seq(GSE60143)/Homer	VYTAGGGCAN	1e-1	-4.495e+00	0.0310	1075.0	6.48%	1952.2	6.05%
TINY(AP2EREBP)/col-TINY-DAP-Seq(GSE60143)/Homer	NNCACCGACA	1e-1	-4.479e+00	0.0314	236.0	1.42%	394.1	1.22%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-1	-4.452e+00	0.0322	2964.0	17.88%	5548.8	17.21%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-1	-4.355e+00	0.0353	1129.0	6.81%	2057.4	6.38%
ANAC047(NAC)/colamp-ANAC047-DAP-Seq(GSE60143)/Homer	WACACGTAACTT	1e-1	-4.348e+00	0.0355	688.0	4.15%	1229.4	3.81%
MYB105(MYB)/colamp-MYB105-DAP-Seq(GSE60143)/Homer	RATWCCGTTA	1e-1	-4.338e+00	0.0357	697.0	4.20%	1246.0	3.86%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-1	-4.320e+00	0.0363	512.0	3.09%	902.8	2.80%
MYB113(MYB)/col-MYB113-DAP-Seq(GSE60143)/Homer	HNDAWTCMGTTAYWN	1e-1	-4.311e+00	0.0365	590.0	3.56%	1047.7	3.25%
dof42(C2C2dof)/col-dof42-DAP-Seq(GSE60143)/Homer	AAAAAGGC	1e-1	-4.302e+00	0.0367	925.0	5.58%	1674.1	5.19%
ZIM(C2C2gata)/col-ZIM-DAP-Seq(GSE60143)/Homer	ATCSRACGGTYRAGA	1e-1	-4.280e+00	0.0374	8.0	0.05%	6.7	0.02%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-1	-4.237e+00	0.0390	1083.0	6.53%	1973.9	6.12%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-1	-4.208e+00	0.0400	859.0	5.18%	1552.6	4.82%
At2g01060(G2like)/colamp-At2g01060-DAP-Seq(GSE60143)/Homer	AGATKCBNWW	1e-1	-4.152e+00	0.0422	4423.0	26.68%	8364.7	25.94%
WRKY42(WRKY)/colamp-WRKY42-DAP-Seq(GSE60143)/Homer	NAAAGTCAACGN	1e-1	-4.149e+00	0.0422	347.0	2.09%	600.3	1.86%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e-1	-4.114e+00	0.0435	977.0	5.89%	1776.8	5.51%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-1	-4.083e+00	0.0448	1454.0	8.77%	2679.4	8.31%
ATHB6(Homeobox)/Arabidopsis-HB6-ChIP-Seq(GSE80564)/Homer	CAATNATTBN	1e-1	-4.072e+00	0.0452	858.0	5.18%	1553.2	4.82%
At3g04030(G2like)/col-At3g04030-DAP-Seq(GSE60143)/Homer	DRGAATCT	1e-1	-4.067e+00	0.0453	1276.0	7.70%	2342.5	7.27%
AIL7(AP2EREBP)/colamp-AIL7-DAP-Seq(GSE60143)/Homer	KCACRAWTYYCGAGG	1e-1	-4.044e+00	0.0462	580.0	3.50%	1033.5	3.21%
WRKY27(WRKY)/colamp-WRKY27-DAP-Seq(GSE60143)/Homer	NHGTTGACYTWD	1e-1	-4.042e+00	0.0462	948.0	5.72%	1723.4	5.35%
SPL11(SBP)/col100-SPL11-DAP-Seq(GSE60143)/Homer	YTGTACTTBH	1e-1	-4.007e+00	0.0476	707.0	4.26%	1271.8	3.94%
AT5G59990(C2C2COlike)/colamp-AT5G59990-DAP-Seq(GSE60143)/Homer	TCTCAACCGTTCATT	1e-1	-4.004e+00	0.0477	18.0	0.11%	20.2	0.06%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-1	-3.986e+00	0.0484	97.0	0.59%	151.9	0.47%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e-1	-3.937e+00	0.0507	1585.0	9.56%	2932.9	9.10%
ATY19(MYB)/col-ATY19-DAP-Seq(GSE60143)/Homer	YYCACCWACCAT	1e-1	-3.898e+00	0.0525	968.0	5.84%	1764.1	5.47%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-1	-3.888e+00	0.0529	363.0	2.19%	633.7	1.97%
ESE3(AP2EREBP)/col-ESE3-DAP-Seq(GSE60143)/Homer	GACGGTGG	1e-1	-3.802e+00	0.0575	2011.0	12.13%	3749.0	11.63%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-1	-3.801e+00	0.0575	249.0	1.50%	425.5	1.32%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-1	-3.784e+00	0.0582	1129.0	6.81%	2071.2	6.42%
At3g24120(G2like)/col-At3g24120-DAP-Seq(GSE60143)/Homer	NWWAGMATMW	1e-1	-3.762e+00	0.0593	4799.0	28.95%	9107.7	28.25%
LOB(LOBAS2)/col-LOB-DAP-Seq(GSE60143)/Homer	CGCCGKAWWTTHCGS	1e-1	-3.721e+00	0.0617	272.0	1.64%	468.2	1.45%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-1	-3.693e+00	0.0632	940.0	5.67%	1717.0	5.33%
SVP(MADS)/col-SVP-DAP-Seq(GSE60143)/Homer	ANTTWCCHAATTTGG	1e-1	-3.680e+00	0.0639	720.0	4.34%	1302.0	4.04%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-1	-3.675e+00	0.0640	218.0	1.31%	370.7	1.15%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e-1	-3.668e+00	0.0643	119.0	0.72%	192.1	0.60%
SPL1(SBP)/colamp-SPL1-DAP-Seq(GSE60143)/Homer	HYGTACDTWH	1e-1	-3.635e+00	0.0663	1941.0	11.71%	3620.6	11.23%
EMB1789(C3H)/col-EMB1789-DAP-Seq(GSE60143)/Homer	TWTTTACCGYND	1e-1	-3.587e+00	0.0693	470.0	2.83%	836.2	2.59%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-1	-3.562e+00	0.0709	322.0	1.94%	562.9	1.75%
AtGRF6(GRF)/col-AtGRF6-DAP-Seq(GSE60143)/Homer	NTGTCAGADNNNNNN	1e-1	-3.551e+00	0.0715	1561.0	9.42%	2898.8	8.99%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-1	-3.550e+00	0.0715	612.0	3.69%	1102.7	3.42%
WRKY46(WRKY)/colamp-WRKY46-DAP-Seq(GSE60143)/Homer	AAAGTCAACGSN	1e-1	-3.525e+00	0.0730	50.0	0.30%	73.8	0.23%
MYB3R5(MYB)/col-MYB3R5-DAP-Seq(GSE60143)/Homer	THYAACGGTHAWAWT	1e-1	-3.505e+00	0.0743	71.0	0.43%	109.5	0.34%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-1	-3.484e+00	0.0756	498.0	3.00%	890.3	2.76%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e-1	-3.482e+00	0.0756	8.0	0.05%	7.8	0.02%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-1	-3.475e+00	0.0759	835.0	5.04%	1523.2	4.72%
GATA12(C2C2gata)/col-GATA12-DAP-Seq(GSE60143)/Homer	YAGATCTRAW	1e-1	-3.469e+00	0.0762	633.0	3.82%	1143.1	3.55%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-1	-3.389e+00	0.0823	2510.0	15.14%	4718.5	14.63%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e-1	-3.351e+00	0.0853	296.0	1.79%	517.3	1.60%
ATHB5(HB)/colamp-ATHB5-DAP-Seq(GSE60143)/Homer	AATGATTG	1e-1	-3.335e+00	0.0864	1119.0	6.75%	2064.4	6.40%
TRP2(MYBrelated)/colamp-TRP2-DAP-Seq(GSE60143)/Homer	TAAACCCT	1e-1	-3.221e+00	0.0966	244.0	1.47%	423.3	1.31%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-1	-3.206e+00	0.0978	239.0	1.44%	414.2	1.28%
CBF4(AP2EREBP)/colamp-CBF4-DAP-Seq(GSE60143)/Homer	NRCCGACDWNNNNNN	1e-1	-3.205e+00	0.0978	612.0	3.69%	1109.4	3.44%
CRC(C2C2YABBY)/col-CRC-DAP-Seq(GSE60143)/Homer	TWATSATA	1e-1	-3.191e+00	0.0988	1333.0	8.04%	2475.9	7.68%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-1	-3.189e+00	0.0988	298.0	1.80%	523.6	1.62%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e-1	-3.178e+00	0.0995	211.0	1.27%	363.6	1.13%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-1	-3.121e+00	0.1051	404.0	2.44%	721.4	2.24%
MYB3R4(MYB)/col-MYB3R4-DAP-Seq(GSE60143)/Homer	AWWTAACCGTTR	1e-1	-3.117e+00	0.1053	153.0	0.92%	258.3	0.80%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-1	-3.116e+00	0.1053	2182.0	13.16%	4100.2	12.72%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-1	-3.115e+00	0.1053	192.0	1.16%	329.5	1.02%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e-1	-3.105e+00	0.1057	170.0	1.03%	289.6	0.90%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-1	-3.098e+00	0.1061	657.0	3.96%	1197.0	3.71%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e-1	-3.061e+00	0.1099	19.0	0.11%	24.1	0.07%
At5g29000(G2like)/col-At5g29000-DAP-Seq(GSE60143)/Homer	RGAATATTCYHH	1e-1	-3.044e+00	0.1115	299.0	1.80%	528.0	1.64%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-1	-2.959e+00	0.1211	785.0	4.73%	1441.4	4.47%
SHN3(AP2EREBP)/col-SHN3-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e-1	-2.940e+00	0.1231	671.0	4.05%	1226.9	3.81%
WRKY30(WRKY)/colamp-WRKY30-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e-1	-2.935e+00	0.1234	256.0	1.54%	449.4	1.39%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-1	-2.916e+00	0.1254	2658.0	16.03%	5022.7	15.58%
AT3G16280(AP2EREBP)/colamp-AT3G16280-DAP-Seq(GSE60143)/Homer	HCACCGACAHHDHHN	1e-1	-2.914e+00	0.1254	285.0	1.72%	504.0	1.56%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e-1	-2.903e+00	0.1264	2055.0	12.40%	3865.1	11.99%
STOP1(C2H2)/colamp-STOP1-DAP-Seq(GSE60143)/Homer	DTATCTGGKGRAGGT	1e-1	-2.903e+00	0.1264	661.0	3.99%	1208.3	3.75%
IDD2(C2H2)/colamp-IDD2-DAP-Seq(GSE60143)/Homer	HAVAAAAMGACAAAA	1e-1	-2.868e+00	0.1303	124.0	0.75%	208.1	0.65%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e-1	-2.849e+00	0.1325	5.0	0.03%	4.6	0.01%
MYB3(MYB)/Arabidopsis-MYB3-ChIP-Seq(GSE80564)/Homer	GKTAGGTRGG	1e-1	-2.841e+00	0.1331	2611.0	15.75%	4935.8	15.31%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-1	-2.811e+00	0.1370	514.0	3.10%	934.0	2.90%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-1	-2.792e+00	0.1392	3116.0	18.79%	5909.7	18.33%
NST1(NAC)/colamp-NST1-DAP-Seq(GSE60143)/Homer	WRCTTRWWNWWYAAG	1e-1	-2.784e+00	0.1400	956.0	5.77%	1770.3	5.49%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-1	-2.767e+00	0.1421	2160.0	13.03%	4072.6	12.63%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e-1	-2.759e+00	0.1429	683.0	4.12%	1253.9	3.89%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e-1	-2.754e+00	0.1432	109.0	0.66%	182.6	0.57%
IDD5(C2H2)/colamp-IDD5-DAP-Seq(GSE60143)/Homer	TTTTGTCTTTTTBTK	1e-1	-2.751e+00	0.1433	694.0	4.19%	1274.7	3.95%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-1	-2.726e+00	0.1465	172.0	1.04%	297.6	0.92%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-1	-2.708e+00	0.1488	64.0	0.39%	102.3	0.32%
At4g16750(AP2EREBP)/col-At4g16750-DAP-Seq(GSE60143)/Homer	HACCGACAHA	1e-1	-2.686e+00	0.1517	681.0	4.11%	1251.3	3.88%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-1	-2.665e+00	0.1546	1012.0	6.10%	1880.4	5.83%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e-1	-2.664e+00	0.1546	98.0	0.59%	163.2	0.51%
PTF1(TCP)/colamp-PTF1-DAP-Seq(GSE60143)/Homer	RDDGGGACCACA	1e-1	-2.662e+00	0.1546	183.0	1.10%	318.5	0.99%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-1	-2.655e+00	0.1551	679.0	4.10%	1248.6	3.87%
SMB(NAC)/colamp-SMB-DAP-Seq(GSE60143)/Homer	CTTVNNNNDBAAGHW	1e-1	-2.646e+00	0.1561	1039.0	6.27%	1932.9	5.99%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e-1	-2.568e+00	0.1684	464.0	2.80%	844.5	2.62%
NUC(C2H2)/col-NUC-DAP-Seq(GSE60143)/Homer	HAVAAAACGACAAAA	1e-1	-2.552e+00	0.1707	88.0	0.53%	146.1	0.45%
ANAC038(NAC)/col-ANAC038-DAP-Seq(GSE60143)/Homer	ACACGTWAYC	1e-1	-2.550e+00	0.1707	2500.0	15.08%	4735.5	14.69%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-1	-2.530e+00	0.1737	156.0	0.94%	270.6	0.84%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-1	-2.509e+00	0.1769	432.0	2.61%	785.5	2.44%
SGR5(C2H2)/colamp-SGR5-DAP-Seq(GSE60143)/Homer	TTTGTCTTTTTT	1e-1	-2.508e+00	0.1769	764.0	4.61%	1413.9	4.39%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e-1	-2.499e+00	0.1778	16.0	0.10%	21.5	0.07%
TGA5(bZIP)/col-TGA5-DAP-Seq(GSE60143)/Homer	NNGATGACGTCATCN	1e-1	-2.485e+00	0.1800	81.0	0.49%	134.4	0.42%
WRKY45(WRKY)/col-WRKY45-DAP-Seq(GSE60143)/Homer	HNNNKTTGACTWWNH	1e-1	-2.466e+00	0.1829	389.0	2.35%	705.8	2.19%
At1g77640(AP2EREBP)/col-At1g77640-DAP-Seq(GSE60143)/Homer	TGTCGGTGGA	1e-1	-2.435e+00	0.1883	238.0	1.44%	423.9	1.31%
At4g31060(AP2EREBP)/colamp-At4g31060-DAP-Seq(GSE60143)/Homer	CACCGACAAW	1e-1	-2.415e+00	0.1916	356.0	2.15%	644.1	2.00%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e-1	-2.405e+00	0.1932	117.0	0.71%	200.5	0.62%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-1	-2.384e+00	0.1968	1098.0	6.62%	2053.7	6.37%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e-1	-2.378e+00	0.1975	5766.0	34.78%	11055.8	34.29%
REM16(ABI3VP1)/col-REM16-DAP-Seq(GSE60143)/Homer	DTTTTTSCCGSMAAA	1e-1	-2.359e+00	0.2008	2.0	0.01%	0.0	0.00%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-1	-2.318e+00	0.2087	1678.0	10.12%	3166.5	9.82%
HSF3(HSF)/colamp-HSF3-DAP-Seq(GSE60143)/Homer	NTTCTAGAAKCTTCT	1e-1	-2.318e+00	0.2087	1318.0	7.95%	2476.6	7.68%
TCP3(TCP)/colamp-TCP3-DAP-Seq(GSE60143)/Homer	WGTGGTCCCAAHWWW	1e-1	-2.309e+00	0.2096	434.0	2.62%	793.4	2.46%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-1	-2.308e+00	0.2096	1381.0	8.33%	2597.2	8.06%
ARF2(ARF)/col-ARF2-DAP-Seq(GSE60143)/Homer	TTGTCGGMWN	1e0	-2.298e+00	0.2110	3715.0	22.41%	7091.5	21.99%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-2.297e+00	0.2110	1109.0	6.69%	2078.0	6.44%
PLT1(AP2EREBP)/colamp-PLT1-DAP-Seq(GSE60143)/Homer	GCACGAWTYCCGAGG	1e0	-2.281e+00	0.2136	96.0	0.58%	163.9	0.51%
GATA19(C2C2gata)/colamp-GATA19-DAP-Seq(GSE60143)/Homer	ATCSGATCVG	1e0	-2.278e+00	0.2137	65.0	0.39%	107.6	0.33%
At4g32800(AP2EREBP)/colamp-At4g32800-DAP-Seq(GSE60143)/Homer	DYCACCGACAHWWWH	1e0	-2.272e+00	0.2146	91.0	0.55%	154.9	0.48%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-2.207e+00	0.2286	729.0	4.40%	1355.4	4.20%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-2.190e+00	0.2318	4278.0	25.80%	8186.6	25.39%
ATHB21(HB)/colamp-ATHB21-DAP-Seq(GSE60143)/Homer	YCAATWAT	1e0	-2.179e+00	0.2339	546.0	3.29%	1008.7	3.13%
DDF1(AP2EREBP)/col-DDF1-DAP-Seq(GSE60143)/Homer	GCCGACAT	1e0	-2.175e+00	0.2344	354.0	2.14%	645.6	2.00%
TGA3(bZIP)/colamp-TGA3-DAP-Seq(GSE60143)/Homer	WTGATGACGTCATCW	1e0	-2.175e+00	0.2344	50.0	0.30%	81.4	0.25%
MYB83(MYB)/colamp-MYB83-DAP-Seq(GSE60143)/Homer	CACCAACCWH	1e0	-2.158e+00	0.2374	2236.0	13.49%	4246.5	13.17%
At1g74840(MYBrelated)/col100-At1g74840-DAP-Seq(GSE60143)/Homer	YHTTATCCAWWT	1e0	-2.128e+00	0.2440	807.0	4.87%	1507.0	4.67%
GT1(Trihelix)/col-GT1-DAP-Seq(GSE60143)/Homer	TTAACCATGGTTAAD	1e0	-2.126e+00	0.2440	9.0	0.05%	11.6	0.04%
MYB40(MYB)/col-MYB40-DAP-Seq(GSE60143)/Homer	TGGTAGGTRARA	1e0	-2.120e+00	0.2449	455.0	2.74%	838.0	2.60%
AT3G42860(zfGRF)/col-AT3G42860-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e0	-2.063e+00	0.2586	215.0	1.30%	386.7	1.20%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-2.031e+00	0.2665	235.0	1.42%	424.9	1.32%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-2.000e+00	0.2742	108.0	0.65%	188.1	0.58%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-1.981e+00	0.2790	79.0	0.48%	135.6	0.42%
CBF2(AP2EREBP)/colamp-CBF2-DAP-Seq(GSE60143)/Homer	YBRCCGACATNNNNN	1e0	-1.980e+00	0.2790	392.0	2.36%	722.0	2.24%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-1.973e+00	0.2800	1314.0	7.93%	2482.7	7.70%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-1.966e+00	0.2813	212.0	1.28%	382.3	1.19%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-1.960e+00	0.2824	53.0	0.32%	88.8	0.28%
At4g01280(MYBrelated)/colamp-At4g01280-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-1.953e+00	0.2836	650.0	3.92%	1212.2	3.76%
ATHB33(ZFHD)/col-ATHB33-DAP-Seq(GSE60143)/Homer	NGTRATTAAK	1e0	-1.946e+00	0.2851	1530.0	9.23%	2898.1	8.99%
ANAC005(NAC)/col-ANAC005-DAP-Seq(GSE60143)/Homer	WVCTTVTWNHABAAG	1e0	-1.933e+00	0.2881	572.0	3.45%	1064.5	3.30%
WRKY22(WRKY)/colamp-WRKY22-DAP-Seq(GSE60143)/Homer	WWAAAGTCAACK	1e0	-1.926e+00	0.2895	574.0	3.46%	1068.4	3.31%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e0	-1.898e+00	0.2972	78.0	0.47%	134.5	0.42%
bHLH157(bHLH)/col-bHLH157-DAP-Seq(GSE60143)/Homer	KACACGTCTCTY	1e0	-1.870e+00	0.3050	234.0	1.41%	425.0	1.32%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-1.841e+00	0.3132	870.0	5.25%	1636.2	5.07%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.799e+00	0.3261	118.0	0.71%	209.8	0.65%
ANAC070(NAC)/colamp-ANAC070-DAP-Seq(GSE60143)/Homer	CTTRHDNHNBAAGHW	1e0	-1.762e+00	0.3375	1264.0	7.62%	2395.0	7.43%
AT3G58630(Trihelix)/col-AT3G58630-DAP-Seq(GSE60143)/Homer	TCTCCGGCGA	1e0	-1.752e+00	0.3403	193.0	1.16%	350.1	1.09%
GATA11(C2C2gata)/col-GATA11-DAP-Seq(GSE60143)/Homer	DDHYYAGATCTR	1e0	-1.739e+00	0.3439	451.0	2.72%	839.1	2.60%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-1.716e+00	0.3512	65.0	0.39%	112.4	0.35%
BIM3(bHLH)/col-BIM3-DAP-Seq(GSE60143)/Homer	TWVTCACGTGAB	1e0	-1.713e+00	0.3513	134.0	0.81%	240.5	0.75%
GRF9(GRF)/colamp-GRF9-DAP-Seq(GSE60143)/Homer	NWCTGACANNNNNNN	1e0	-1.701e+00	0.3551	1209.0	7.29%	2292.2	7.11%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.679e+00	0.3622	29.0	0.17%	47.9	0.15%
MYB27(MYB)/colamp-MYB27-DAP-Seq(GSE60143)/Homer	TACCTAACWT	1e0	-1.675e+00	0.3627	196.0	1.18%	357.7	1.11%
RAV1(RAV)/colamp-RAV1-DAP-Seq(GSE60143)/Homer	TWWTTTCTGTTG	1e0	-1.671e+00	0.3636	730.0	4.40%	1374.7	4.26%
AT4G18450(AP2EREBP)/col-AT4G18450-DAP-Seq(GSE60143)/Homer	ATGGCGGCKG	1e0	-1.669e+00	0.3636	684.0	4.13%	1286.8	3.99%
DREB26(AP2EREBP)/col-DREB26-DAP-Seq(GSE60143)/Homer	CCACCGACAH	1e0	-1.659e+00	0.3663	300.0	1.81%	554.1	1.72%
AT1G72740(MYBrelated)/colamp-AT1G72740-DAP-Seq(GSE60143)/Homer	NNWWAMCCTAAHWNN	1e0	-1.658e+00	0.3663	1352.0	8.15%	2569.9	7.97%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-1.629e+00	0.3758	462.0	2.79%	863.3	2.68%
ARF16(ARF)/col-ARF16-DAP-Seq(GSE60143)/Homer	ATTTTACGAT	1e0	-1.629e+00	0.3758	136.0	0.82%	245.7	0.76%
LEP(AP2EREBP)/col-LEP-DAP-Seq(GSE60143)/Homer	CDCCGCCGTC	1e0	-1.625e+00	0.3758	485.0	2.93%	907.5	2.81%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-1.589e+00	0.3888	1383.0	8.34%	2632.6	8.16%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e0	-1.583e+00	0.3902	150.0	0.90%	272.6	0.85%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-1.541e+00	0.4062	571.0	3.44%	1074.5	3.33%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e0	-1.525e+00	0.4122	554.0	3.34%	1042.4	3.23%
LCL1(MYBrelated)/colamp-LCL1-DAP-Seq(GSE60143)/Homer	NAAAATATCTWHWWN	1e0	-1.520e+00	0.4134	168.0	1.01%	307.7	0.95%
AGL15(MADS)/col-AGL15-DAP-Seq(GSE60143)/Homer	TTTCCHWATWDGGAA	1e0	-1.516e+00	0.4139	205.0	1.24%	377.3	1.17%
EPR1(MYBrelated)/colamp-EPR1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-1.513e+00	0.4139	433.0	2.61%	811.1	2.52%
LHY1(MYBrelated)/col-LHY1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-1.513e+00	0.4139	433.0	2.61%	811.1	2.52%
ANAC046(NAC)/colamp-ANAC046-DAP-Seq(GSE60143)/Homer	ACACGYWAYC	1e0	-1.512e+00	0.4139	2208.0	13.32%	4228.3	13.11%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-1.476e+00	0.4275	31.0	0.19%	52.8	0.16%
DEAR5(AP2EREBP)/col-DEAR5-DAP-Seq(GSE60143)/Homer	NDWTGTCGGTGRWDN	1e0	-1.469e+00	0.4297	132.0	0.80%	240.5	0.75%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-1.458e+00	0.4333	70.0	0.42%	124.1	0.39%
ERF38(AP2EREBP)/col-ERF38-DAP-Seq(GSE60143)/Homer	CACCGACA	1e0	-1.449e+00	0.4363	420.0	2.53%	788.6	2.45%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-1.449e+00	0.4363	1301.0	7.85%	2481.5	7.70%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-1.443e+00	0.4374	102.0	0.62%	184.4	0.57%
ANL2(HB)/col-ANL2-DAP-Seq(GSE60143)/Homer	CATTAATTGC	1e0	-1.434e+00	0.4406	615.0	3.71%	1162.0	3.60%
GATA14(C2C2gata)/col-GATA14-DAP-Seq(GSE60143)/Homer	AYCAGATCTG	1e0	-1.432e+00	0.4406	690.0	4.16%	1306.4	4.05%
ANAC071(NAC)/col-ANAC071-DAP-Seq(GSE60143)/Homer	DNCKTNDNNNHNAAG	1e0	-1.423e+00	0.4435	913.0	5.51%	1735.3	5.38%
MYB57(MYB)/col-MYB57-DAP-Seq(GSE60143)/Homer	TTACCTAACT	1e0	-1.408e+00	0.4495	553.0	3.34%	1044.1	3.24%
JKD(C2H2)/col-JKD-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTT	1e0	-1.407e+00	0.4495	178.0	1.07%	328.1	1.02%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-1.393e+00	0.4545	10.0	0.06%	15.1	0.05%
WRKY71(WRKY)/col-WRKY71-DAP-Seq(GSE60143)/Homer	CKTTGACYWW	1e0	-1.390e+00	0.4549	749.0	4.52%	1421.8	4.41%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-1.360e+00	0.4675	524.0	3.16%	990.5	3.07%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-1.360e+00	0.4675	158.0	0.95%	291.3	0.90%
CAMTA5(CAMTA)/col-CAMTA5-DAP-Seq(GSE60143)/Homer	ACGCGTTTTANACRC	1e0	-1.349e+00	0.4709	262.0	1.58%	489.4	1.52%
RAP21(AP2EREBP)/colamp-RAP21-DAP-Seq(GSE60143)/Homer	BCACCGACAHNN	1e0	-1.338e+00	0.4754	143.0	0.86%	263.8	0.82%
GATA6(C2C2gata)/col200-GATA6-DAP-Seq(GSE60143)/Homer	TAGATCTARAHH	1e0	-1.335e+00	0.4759	153.0	0.92%	282.4	0.88%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-1.333e+00	0.4760	11.0	0.07%	17.8	0.06%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-1.331e+00	0.4760	2405.0	14.51%	4621.7	14.33%
ANAC042(NAC)/col-ANAC042-DAP-Seq(GSE60143)/Homer	CGTNDHNDHNACGKY	1e0	-1.321e+00	0.4797	773.0	4.66%	1471.0	4.56%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e0	-1.300e+00	0.4887	692.0	4.17%	1315.9	4.08%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-1.286e+00	0.4950	753.0	4.54%	1434.0	4.45%
At5g47390(MYBrelated)/col-At5g47390-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e0	-1.285e+00	0.4950	1427.0	8.61%	2733.2	8.48%
AT1G44830(AP2EREBP)/col-AT1G44830-DAP-Seq(GSE60143)/Homer	NCCACCGACA	1e0	-1.278e+00	0.4970	399.0	2.41%	753.2	2.34%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-1.271e+00	0.4991	1871.0	11.29%	3592.1	11.14%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-1.265e+00	0.5012	297.0	1.79%	558.4	1.73%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e0	-1.259e+00	0.5032	1449.0	8.74%	2777.1	8.61%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.247e+00	0.5083	423.0	2.55%	800.5	2.48%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.229e+00	0.5166	2855.0	17.22%	5500.8	17.06%
TGA9(bZIP)/colamp-TGA9-DAP-Seq(GSE60143)/Homer	VTGACGTC	1e0	-1.226e+00	0.5174	1228.0	7.41%	2352.7	7.30%
MYB62(MYB)/colamp-MYB62-DAP-Seq(GSE60143)/Homer	NTACCTAACT	1e0	-1.210e+00	0.5249	1735.0	10.47%	3333.8	10.34%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-1.181e+00	0.5393	112.0	0.68%	207.2	0.64%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.145e+00	0.5578	3082.0	18.59%	5947.9	18.45%
GATA1(C2C2gata)/colamp-GATA1-DAP-Seq(GSE60143)/Homer	DDWWYYAGATCTRRW	1e0	-1.138e+00	0.5605	380.0	2.29%	721.0	2.24%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-1.132e+00	0.5630	666.0	4.02%	1272.9	3.95%
WRKY26(WRKY)/colamp-WRKY26-DAP-Seq(GSE60143)/Homer	CGTTGACTWDKN	1e0	-1.128e+00	0.5642	490.0	2.96%	933.8	2.90%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-1.118e+00	0.5687	64.0	0.39%	117.6	0.36%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-1.117e+00	0.5687	17.0	0.10%	29.6	0.09%
At1g19000(MYBrelated)/colamp-At1g19000-DAP-Seq(GSE60143)/Homer	WWTGGATAADDT	1e0	-1.114e+00	0.5687	863.0	5.21%	1653.0	5.13%
WRKY65(WRKY)/colamp-WRKY65-DAP-Seq(GSE60143)/Homer	AWWWAGTCAACG	1e0	-1.108e+00	0.5713	433.0	2.61%	824.2	2.56%
At2g03500(G2like)/col-At2g03500-DAP-Seq(GSE60143)/Homer	WWAGAATATTCT	1e0	-1.096e+00	0.5773	245.0	1.48%	463.5	1.44%
At3g09600(MYBrelated)/colamp-At3g09600-DAP-Seq(GSE60143)/Homer	AAAATATCTT	1e0	-1.090e+00	0.5796	510.0	3.08%	973.8	3.02%
Rap210(AP2EREBP)/col-Rap210-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e0	-1.089e+00	0.5796	524.0	3.16%	1000.7	3.10%
WRKY47(WRKY)/colamp-WRKY47-DAP-Seq(GSE60143)/Homer	WAAGTCAACGBT	1e0	-1.088e+00	0.5796	223.0	1.35%	421.7	1.31%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e0	-1.088e+00	0.5796	470.0	2.83%	896.3	2.78%
VND2(NAC)/col-VND2-DAP-Seq(GSE60143)/Homer	DNCKTNNNNNNNAAG	1e0	-1.082e+00	0.5798	1021.0	6.16%	1960.3	6.08%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e0	-1.078e+00	0.5812	202.0	1.22%	381.5	1.18%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-1.076e+00	0.5812	60.0	0.36%	110.1	0.34%
At4g28140(AP2EREBP)/colamp-At4g28140-DAP-Seq(GSE60143)/Homer	DCCACCGACCAW	1e0	-1.053e+00	0.5937	312.0	1.88%	593.3	1.84%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.047e+00	0.5961	128.0	0.77%	240.7	0.75%
NTM2(NAC)/col-NTM2-DAP-Seq(GSE60143)/Homer	CTTRTNNNAYAAGBH	1e0	-1.036e+00	0.6015	627.0	3.78%	1202.0	3.73%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.032e+00	0.6030	703.0	4.24%	1348.4	4.18%
VND6(NAC)/col-VND6-DAP-Seq(GSE60143)/Homer	DCTTNHTTTTYAMGY	1e0	-1.026e+00	0.6055	1240.0	7.48%	2387.9	7.41%
AT4G00250(GeBP)/col-AT4G00250-DAP-Seq(GSE60143)/Homer	WDTGGATAAKRT	1e0	-1.025e+00	0.6055	576.0	3.47%	1103.2	3.42%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-1.008e+00	0.6138	31.0	0.19%	56.5	0.18%
At5g52660(MYBrelated)/colamp-At5g52660-DAP-Seq(GSE60143)/Homer	HAAAAATATCTW	1e0	-1.005e+00	0.6150	502.0	3.03%	961.4	2.98%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-9.998e-01	0.6168	363.0	2.19%	693.5	2.15%
SND3(NAC)/col-SND3-DAP-Seq(GSE60143)/Homer	CTTNHNNNDNAAGNH	1e0	-9.961e-01	0.6180	774.0	4.67%	1487.3	4.61%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-9.900e-01	0.6206	396.0	2.39%	757.2	2.35%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-9.858e-01	0.6221	181.0	1.09%	343.3	1.06%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-9.737e-01	0.6286	54.0	0.33%	100.9	0.31%
NTM1(NAC)/col-NTM1-DAP-Seq(GSE60143)/Homer	ACTTRTARAASAAGT	1e0	-9.608e-01	0.6356	589.0	3.55%	1131.3	3.51%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-9.532e-01	0.6393	192.0	1.16%	365.3	1.13%
ANAC083(NAC)/col-ANAC083-DAP-Seq(GSE60143)/Homer	CKTRWNNNWYAMGTA	1e0	-9.419e-01	0.6454	725.0	4.37%	1395.9	4.33%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-9.329e-01	0.6500	297.0	1.79%	568.1	1.76%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e0	-9.283e-01	0.6519	736.0	4.44%	1417.2	4.40%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-9.181e-01	0.6574	247.0	1.49%	472.5	1.47%
RVE1(MYBrelated)/col-RVE1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-9.152e-01	0.6581	622.0	3.75%	1197.9	3.72%
ATHB7(Homeobox)/col-ATHB7-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-9.100e-01	0.6604	767.0	4.63%	1478.4	4.59%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-9.047e-01	0.6627	253.0	1.53%	484.8	1.50%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-9.010e-01	0.6640	759.0	4.58%	1463.3	4.54%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-8.989e-01	0.6642	314.0	1.89%	602.4	1.87%
ANAC062(NAC)/colamp-ANAC062-DAP-Seq(GSE60143)/Homer	TACTTANTNWNYAAG	1e0	-8.920e-01	0.6676	423.0	2.55%	813.6	2.52%
CAMTA1(CAMTA)/col-CAMTA1-DAP-Seq(GSE60143)/Homer	WWAACGCGTT	1e0	-8.909e-01	0.6676	547.0	3.30%	1053.1	3.27%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e0	-8.866e-01	0.6689	1742.0	10.51%	3370.5	10.45%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e0	-8.851e-01	0.6689	489.0	2.95%	941.4	2.92%
MYB121(MYB)/col-MYB121-DAP-Seq(GSE60143)/Homer	YNTACCTAACWW	1e0	-8.832e-01	0.6689	398.0	2.40%	765.4	2.37%
VND1(NAC)/col-VND1-DAP-Seq(GSE60143)/Homer	CTTRWDNHWYAAGYW	1e0	-8.820e-01	0.6689	840.0	5.07%	1621.2	5.03%
AT3G10113(MYBrelated)/col-AT3G10113-DAP-Seq(GSE60143)/Homer	WNAAATATCWWN	1e0	-8.779e-01	0.6700	494.0	2.98%	951.8	2.95%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-8.699e-01	0.6742	1130.0	6.82%	2184.9	6.78%
dHNF4(NR)/Fly-HNF4-ChIP-Seq(GSE73675)/Homer	GGTCCAAAGTCCAMT	1e0	-8.689e-01	0.6742	48.0	0.29%	90.8	0.28%
ATHB20(Homeobox)/colamp-ATHB20-DAP-Seq(GSE60143)/Homer	CAATHATT	1e0	-8.676e-01	0.6742	470.0	2.83%	905.6	2.81%
WRKY17(WRKY)/colamp-WRKY17-DAP-Seq(GSE60143)/Homer	GCGTTGACTTTT	1e0	-8.650e-01	0.6742	7.0	0.04%	12.5	0.04%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-8.633e-01	0.6742	26.0	0.16%	48.4	0.15%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-8.609e-01	0.6744	522.0	3.15%	1006.4	3.12%
ANAC011(NAC)/col-ANAC011-DAP-Seq(GSE60143)/Homer	TDCTTGYRNNDCAAG	1e0	-8.448e-01	0.6841	407.0	2.45%	784.2	2.43%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e0	-8.373e-01	0.6881	256.0	1.54%	492.8	1.53%
MYB94(MYB)/col-MYB94-DAP-Seq(GSE60143)/Homer	WGGTRGTTGGKA	1e0	-8.352e-01	0.6884	574.0	3.46%	1109.0	3.44%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	-8.229e-01	0.6957	9.0	0.05%	16.5	0.05%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-8.224e-01	0.6957	142.0	0.86%	272.6	0.85%
AGL25(MADS)/colamp-AGL25-DAP-Seq(GSE60143)/Homer	TTTCCATWTWTGGAA	1e0	-8.198e-01	0.6957	71.0	0.43%	135.2	0.42%
bZIP44(bZIP)/colamp-bZIP44-DAP-Seq(GSE60143)/Homer	NDTGCCACGTCAGCH	1e0	-8.171e-01	0.6962	20.0	0.12%	37.3	0.12%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-8.154e-01	0.6962	2817.0	16.99%	5464.3	16.95%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-8.150e-01	0.6962	175.0	1.06%	336.4	1.04%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-7.929e-01	0.7096	1325.0	7.99%	2568.3	7.97%
GATA15(C2C2gata)/col-GATA15-DAP-Seq(GSE60143)/Homer	KATGATCA	1e0	-7.881e-01	0.7118	1487.0	8.97%	2883.4	8.94%
ATHB18(Homeobox)/colamp-ATHB18-DAP-Seq(GSE60143)/Homer	YCAATSATTG	1e0	-7.865e-01	0.7118	188.0	1.13%	362.9	1.13%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-7.757e-01	0.7182	291.0	1.76%	562.6	1.74%
AS2(LOBAS2)/col-AS2-DAP-Seq(GSE60143)/Homer	CCGDAAWWHMCGSCG	1e0	-7.732e-01	0.7188	84.0	0.51%	161.2	0.50%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-7.706e-01	0.7195	1095.0	6.60%	2123.6	6.59%
IDD4(C2H2)/col-IDD4-DAP-Seq(GSE60143)/Homer	TTTGTCTTTWTB	1e0	-7.576e-01	0.7276	920.0	5.55%	1784.6	5.53%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-7.460e-01	0.7349	794.0	4.79%	1540.7	4.78%
ANAC016(NAC)/col-ANAC016-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAMG	1e0	-7.450e-01	0.7349	935.0	5.64%	1814.5	5.63%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-7.422e-01	0.7353	228.0	1.38%	441.9	1.37%
At2g44940(AP2EREBP)/colamp-At2g44940-DAP-Seq(GSE60143)/Homer	NYACCGACAHNNNNN	1e0	-7.395e-01	0.7360	162.0	0.98%	313.1	0.97%
AGL16(MADS)/col-AGL16-DAP-Seq(GSE60143)/Homer	TWCCHWATWDGGAAA	1e0	-7.394e-01	0.7360	112.0	0.68%	216.7	0.67%
At5g66730(C2H2)/colamp-At5g66730-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTK	1e0	-7.389e-01	0.7360	264.0	1.59%	511.3	1.59%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-7.368e-01	0.7360	32.0	0.19%	61.5	0.19%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-7.310e-01	0.7374	811.0	4.89%	1574.1	4.88%
HAT1(Homeobox)/col-HAT1-DAP-Seq(GSE60143)/Homer	SCAATCATTGNN	1e0	-7.238e-01	0.7414	170.0	1.03%	329.7	1.02%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-7.238e-01	0.7414	572.0	3.45%	1110.0	3.44%
ANAC079(NAC)/colamp-ANAC079-DAP-Seq(GSE60143)/Homer	TACACGCAACCT	1e0	-7.234e-01	0.7414	379.0	2.29%	735.9	2.28%
PLT3(AP2EREBP)/col-PLT3-DAP-Seq(GSE60143)/Homer	GCACGNWTHYCGAGG	1e0	-7.140e-01	0.7450	54.0	0.33%	104.6	0.32%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-6.921e-01	0.7603	61.0	0.37%	118.7	0.37%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	-6.885e-01	0.7618	7.0	0.04%	13.7	0.04%
HAT5(Homeobox)/colamp-HAT5-DAP-Seq(GSE60143)/Homer	DCAATWATTG	1e0	-6.860e-01	0.7624	155.0	0.93%	301.6	0.94%
TGA2(bZIP)/colamp-TGA2-DAP-Seq(GSE60143)/Homer	ACGTCAYCHH	1e0	-6.805e-01	0.7653	562.0	3.39%	1093.8	3.39%
HAT2(Homeobox)/colamp-HAT2-DAP-Seq(GSE60143)/Homer	CYAATSATTR	1e0	-6.758e-01	0.7677	897.0	5.41%	1745.5	5.41%
ZML1(C2C2gata)/colamp-ZML1-DAP-Seq(GSE60143)/Homer	ATCWYRACCGTTSRW	1e0	-6.736e-01	0.7681	9.0	0.05%	17.2	0.05%
ANAC028(NAC)/col-ANAC028-DAP-Seq(GSE60143)/Homer	WRCTTGNNNNNCAAG	1e0	-6.708e-01	0.7690	775.0	4.67%	1508.0	4.68%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-6.619e-01	0.7746	11.0	0.07%	21.4	0.07%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-6.584e-01	0.7761	642.0	3.87%	1250.6	3.88%
TGA4(bZIP)/colamp-TGA4-DAP-Seq(GSE60143)/Homer	RTGACGTCAKCW	1e0	-6.512e-01	0.7804	234.0	1.41%	456.2	1.42%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	-6.363e-01	0.7909	63.0	0.38%	123.7	0.38%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-6.194e-01	0.8030	1034.0	6.24%	2016.9	6.26%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-6.156e-01	0.8048	442.0	2.67%	863.6	2.68%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-6.121e-01	0.8063	25.0	0.15%	49.3	0.15%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-6.006e-01	0.8144	1141.0	6.88%	2226.2	6.90%
At1g69690(TCP)/colamp-At1g69690-DAP-Seq(GSE60143)/Homer	NHGTGGGGCCCACHW	1e0	-5.993e-01	0.8144	420.0	2.53%	821.5	2.55%
AGL6(MADS)/col-AGL6-DAP-Seq(GSE60143)/Homer	TTWCCWWAWWDGGWA	1e0	-5.978e-01	0.8144	151.0	0.91%	296.1	0.92%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-5.971e-01	0.8144	300.0	1.81%	587.6	1.82%
At1g14580(C2H2)/colamp-At1g14580-DAP-Seq(GSE60143)/Homer	CASAAAAMGACAAAA	1e0	-5.964e-01	0.8144	152.0	0.92%	298.4	0.93%
AT2G20400(G2like)/colamp-AT2G20400-DAP-Seq(GSE60143)/Homer	DNVGAATATTCBNHN	1e0	-5.877e-01	0.8183	136.0	0.82%	267.8	0.83%
WRKY11(WRKY)/col-WRKY11-DAP-Seq(GSE60143)/Homer	SCGTTGACTTTN	1e0	-5.860e-01	0.8184	90.0	0.54%	177.8	0.55%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-5.829e-01	0.8197	661.0	3.99%	1292.6	4.01%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-5.809e-01	0.8200	441.0	2.66%	863.2	2.68%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-5.799e-01	0.8200	94.0	0.57%	185.7	0.58%
HAP3(CCAATHAP3)/col-HAP3-DAP-Seq(GSE60143)/Homer	TGATGGAW	1e0	-5.715e-01	0.8251	473.0	2.85%	926.7	2.87%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-5.672e-01	0.8273	764.0	4.61%	1494.4	4.63%
WRKY8(WRKY)/colamp-WRKY8-DAP-Seq(GSE60143)/Homer	CGTTGACTTT	1e0	-5.553e-01	0.8359	85.0	0.51%	169.0	0.52%
ANAC096(NAC)/colamp-ANAC096-DAP-Seq(GSE60143)/Homer	TACTTGWNNNWCAAG	1e0	-5.481e-01	0.8406	712.0	4.29%	1394.5	4.32%
KAN2(G2like)/colamp-KAN2-DAP-Seq(GSE60143)/Homer	ATATTCTY	1e0	-5.461e-01	0.8410	1672.0	10.09%	3266.9	10.13%
VND3(NAC)/colamp-VND3-DAP-Seq(GSE60143)/Homer	TRCTTGWDNHWCAAG	1e0	-5.426e-01	0.8426	700.0	4.22%	1371.5	4.25%
IDD7(C2H2)/col-IDD7-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTN	1e0	-5.281e-01	0.8535	377.0	2.27%	741.5	2.30%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-5.216e-01	0.8578	269.0	1.62%	530.9	1.65%
AT5G56840(MYBrelated)/colamp-AT5G56840-DAP-Seq(GSE60143)/Homer	TGGATAAGGT	1e0	-5.207e-01	0.8578	1391.0	8.39%	2721.9	8.44%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-5.172e-01	0.8589	48.0	0.29%	96.9	0.30%
MYB10(MYB)/col-MYB10-DAP-Seq(GSE60143)/Homer	YCCACCTACCHH	1e0	-5.170e-01	0.8589	504.0	3.04%	990.3	3.07%
RKD2(RWPRK)/colamp-RKD2-DAP-Seq(GSE60143)/Homer	GACKTTTCRDCTTCC	1e0	-5.170e-01	0.8589	826.0	4.98%	1619.8	5.02%
HDG7(HB)/col-HDG7-DAP-Seq(GSE60143)/Homer	WGCATTTAATGC	1e0	-5.147e-01	0.8589	176.0	1.06%	348.1	1.08%
 Ik-1	NHTTGGGAATRCC	1e0	-5.142e-01	0.8589	16579.0	100.00%	32242.8	100.00%
GATA20(C2C2gata)/colamp-GATA20-DAP-Seq(GSE60143)/Homer	TNGATCNDNM	1e0	-5.127e-01	0.8589	2395.0	14.45%	4679.0	14.51%
AT5G22990(C2H2)/col-AT5G22990-DAP-Seq(GSE60143)/Homer	WCGAHDTCGWHN	1e0	-5.046e-01	0.8617	61.0	0.37%	122.7	0.38%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-4.994e-01	0.8648	246.0	1.48%	486.2	1.51%
ERF9(AP2EREBP)/colamp-ERF9-DAP-Seq(GSE60143)/Homer	AWATGGCGGCGG	1e0	-4.946e-01	0.8677	376.0	2.27%	742.0	2.30%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-4.926e-01	0.8681	2917.0	17.59%	5699.8	17.68%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-4.904e-01	0.8687	114.0	0.69%	227.5	0.71%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-4.840e-01	0.8729	533.0	3.21%	1050.0	3.26%
WRKY40(WRKY)/colamp-WRKY40-DAP-Seq(GSE60143)/Homer	AHWAGTCAAC	1e0	-4.821e-01	0.8732	582.0	3.51%	1145.4	3.55%
FRS9(ND)/col-FRS9-DAP-Seq(GSE60143)/Homer	RGAGAGAGAAAG	1e0	-4.768e-01	0.8765	353.0	2.13%	697.7	2.16%
MYB96(MYB)/colamp-MYB96-DAP-Seq(GSE60143)/Homer	WGGTRGTTGG	1e0	-4.528e-01	0.8964	1213.0	7.32%	2381.4	7.39%
AT5G61620(MYBrelated)/colamp-AT5G61620-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e0	-4.491e-01	0.8984	1623.0	9.79%	3182.9	9.87%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-4.323e-01	0.9122	259.0	1.56%	515.5	1.60%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-4.289e-01	0.9139	51.0	0.31%	104.6	0.32%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-4.222e-01	0.9187	77.0	0.46%	156.5	0.49%
AT3G10580(MYBrelated)/colamp-AT3G10580-DAP-Seq(GSE60143)/Homer	TACCTAACWNHW	1e0	-4.140e-01	0.9248	489.0	2.95%	968.9	3.01%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-4.096e-01	0.9275	652.0	3.93%	1288.6	4.00%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-4.077e-01	0.9278	334.0	2.01%	664.7	2.06%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-4.070e-01	0.9278	1974.0	11.91%	3873.1	12.01%
ANAC004(NAC)/colamp-ANAC004-DAP-Seq(GSE60143)/Homer	WNCTTVYNNNRBAAG	1e0	-3.986e-01	0.9335	382.0	2.30%	759.5	2.36%
ATHB24(ZFHD)/colamp-ATHB24-DAP-Seq(GSE60143)/Homer	TAATTAAS	1e0	-3.917e-01	0.9385	842.0	5.08%	1662.3	5.16%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-3.873e-01	0.9413	205.0	1.24%	411.3	1.28%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-3.843e-01	0.9426	471.0	2.84%	935.8	2.90%
PHV(HB)/col-PHV-DAP-Seq(GSE60143)/Homer	RTAATSATTA	1e0	-3.824e-01	0.9430	387.0	2.33%	770.3	2.39%
VND4(NAC)/colamp-VND4-DAP-Seq(GSE60143)/Homer	WRCTTGWANWWCAAG	1e0	-3.672e-01	0.9561	730.0	4.40%	1445.3	4.48%
AT3G09735(S1Falike)/col-AT3G09735-DAP-Seq(GSE60143)/Homer	TTCTAGAANMTTCTA	1e0	-3.671e-01	0.9561	569.0	3.43%	1129.5	3.50%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-3.614e-01	0.9587	73.0	0.44%	150.8	0.47%
WRKY14(WRKY)/colamp-WRKY14-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTN	1e0	-3.594e-01	0.9592	442.0	2.67%	880.3	2.73%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-3.544e-01	0.9626	685.0	4.13%	1358.4	4.21%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-3.509e-01	0.9645	206.0	1.24%	415.4	1.29%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-3.340e-01	0.9796	301.0	1.82%	604.6	1.88%
AT2G28920(ND)/col-AT2G28920-DAP-Seq(GSE60143)/Homer	WAGATATTTWTW	1e0	-3.333e-01	0.9796	303.0	1.83%	608.2	1.89%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-3.316e-01	0.9796	886.0	5.34%	1755.5	5.44%
At2g45680(TCP)/colamp-At2g45680-DAP-Seq(GSE60143)/Homer	GTGGGNCCCACNDND	1e0	-3.132e-01	0.9957	102.0	0.62%	210.6	0.65%
HSFB3(HSF)/colamp-HSFB3-DAP-Seq(GSE60143)/Homer	TTCTAGAAGMTTHTW	1e0	-3.112e-01	0.9962	88.0	0.53%	182.3	0.57%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-3.005e-01	1.0000	1046.0	6.31%	2073.2	6.43%
At5g65130(AP2EREBP)/colamp-At5g65130-DAP-Seq(GSE60143)/Homer	CCRCCGACAWTN	1e0	-2.944e-01	1.0000	243.0	1.47%	492.7	1.53%
BIM1(bHLH)/colamp-BIM1-DAP-Seq(GSE60143)/Homer	NNNNNNVTCACGTGM	1e0	-2.933e-01	1.0000	116.0	0.70%	239.3	0.74%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-2.906e-01	1.0000	97.0	0.59%	201.4	0.62%
AT5G25475(ABI3VP1)/col-AT5G25475-DAP-Seq(GSE60143)/Homer	RNNRNCAAGCADNDB	1e0	-2.904e-01	1.0000	1564.0	9.43%	3090.7	9.59%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e0	-2.845e-01	1.0000	1027.0	6.19%	2038.4	6.32%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-2.796e-01	1.0000	69.0	0.42%	145.1	0.45%
ANAC058(NAC)/col-ANAC058-DAP-Seq(GSE60143)/Homer	TWCTTGTDNNACAAG	1e0	-2.755e-01	1.0000	578.0	3.49%	1156.3	3.59%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-2.743e-01	1.0000	118.0	0.71%	244.9	0.76%
AT1G01250(AP2EREBP)/col-AT1G01250-DAP-Seq(GSE60143)/Homer	YCACCGACAHTW	1e0	-2.738e-01	1.0000	61.0	0.37%	129.7	0.40%
AT1G19040(NAC)/col-AT1G19040-DAP-Seq(GSE60143)/Homer	CTTGNDNHNCAAGYW	1e0	-2.575e-01	1.0000	126.0	0.76%	261.4	0.81%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-2.567e-01	1.0000	121.0	0.73%	251.7	0.78%
ANAC013(NAC)/col-ANAC013-DAP-Seq(GSE60143)/Homer	CTTGNNNNNCAAGNA	1e0	-2.560e-01	1.0000	469.0	2.83%	943.4	2.93%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-2.540e-01	1.0000	771.0	4.65%	1540.0	4.78%
HSF6(HSF)/col-HSF6-DAP-Seq(GSE60143)/Homer	TTYTAGAAGCTTCTA	1e0	-2.504e-01	1.0000	278.0	1.68%	565.3	1.75%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-2.481e-01	1.0000	92.0	0.55%	193.4	0.60%
WRKY43(WRKY)/colamp-WRKY43-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTT	1e0	-2.469e-01	1.0000	303.0	1.83%	615.1	1.91%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-2.406e-01	1.0000	1.0	0.01%	3.7	0.01%
WRKY7(WRKY)/colamp-WRKY7-DAP-Seq(GSE60143)/Homer	AAAAGTCAACGSHWD	1e0	-2.406e-01	1.0000	1.0	0.01%	3.1	0.01%
WRKY21(WRKY)/colamp-WRKY21-DAP-Seq(GSE60143)/Homer	DCGTTGACTTTT	1e0	-2.386e-01	1.0000	75.0	0.45%	159.4	0.49%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e0	-2.385e-01	1.0000	359.0	2.17%	727.3	2.26%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-2.382e-01	1.0000	469.0	2.83%	945.8	2.93%
AT1G24250(Orphan)/col-AT1G24250-DAP-Seq(GSE60143)/Homer	KTDGTTGGTDGTTGG	1e0	-2.341e-01	1.0000	319.0	1.92%	648.7	2.01%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-2.263e-01	1.0000	132.0	0.80%	275.9	0.86%
MYB44(MYB)/colamp-MYB44-DAP-Seq(GSE60143)/Homer	CVGTTWWKTCNGTTA	1e0	-2.221e-01	1.0000	57.0	0.34%	123.8	0.38%
NAC2(NAC)/colamp-NAC2-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e0	-2.202e-01	1.0000	733.0	4.42%	1469.0	4.56%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-2.154e-01	1.0000	556.0	3.35%	1120.3	3.47%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-2.045e-01	1.0000	3208.0	19.35%	6327.3	19.62%
SND2(NAC)/colamp-SND2-DAP-Seq(GSE60143)/Homer	CTTVWNNNWBAAGNW	1e0	-2.037e-01	1.0000	537.0	3.24%	1084.7	3.36%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.985e-01	1.0000	827.0	4.99%	1658.1	5.14%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-1.958e-01	1.0000	93.0	0.56%	198.7	0.62%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-1.951e-01	1.0000	185.0	1.12%	384.6	1.19%
AGL13(MADS)/col-AGL13-DAP-Seq(GSE60143)/Homer	TWCCAWWTWTGGWAA	1e0	-1.926e-01	1.0000	51.0	0.31%	112.8	0.35%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-1.899e-01	1.0000	111.0	0.67%	235.9	0.73%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.862e-01	1.0000	61.0	0.37%	133.1	0.41%
bHLH34(bHLH)/colamp-bHLH34-DAP-Seq(GSE60143)/Homer	HGWGRHWGACACGTG	1e0	-1.848e-01	1.0000	361.0	2.18%	737.1	2.29%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-1.844e-01	1.0000	581.0	3.50%	1174.9	3.64%
MYB49(MYB)/col-MYB49-DAP-Seq(GSE60143)/Homer	ARKTAGGTRR	1e0	-1.833e-01	1.0000	1265.0	7.63%	2524.1	7.83%
EIN3(EIL)/col-EIN3-DAP-Seq(GSE60143)/Homer	ARATTCAATGWATYT	1e0	-1.826e-01	1.0000	127.0	0.77%	268.5	0.83%
ABF2(bZIP)/col-ABF2-DAP-Seq(GSE60143)/Homer	KGMCACGTGDCMHHH	1e0	-1.781e-01	1.0000	235.0	1.42%	486.1	1.51%
bZIP69(bZIP)/col-bZIP69-DAP-Seq(GSE60143)/Homer	GACAGCTGKCAW	1e0	-1.724e-01	1.0000	134.0	0.81%	283.8	0.88%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.702e-01	1.0000	264.0	1.59%	545.6	1.69%
VIP1(bZIP)/col-VIP1-DAP-Seq(GSE60143)/Homer	NTTGACAGCTGTCAN	1e0	-1.671e-01	1.0000	216.0	1.30%	449.7	1.39%
ANAC017(NAC)/colamp-ANAC017-DAP-Seq(GSE60143)/Homer	TMCTTGNNNNNCAAG	1e0	-1.662e-01	1.0000	118.0	0.71%	251.6	0.78%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-1.650e-01	1.0000	1811.0	10.92%	3602.1	11.17%
FUS3(ABI3VP1)/col-FUS3-DAP-Seq(GSE60143)/Homer	DNNWTNTGCATGKNN	1e0	-1.647e-01	1.0000	1072.0	6.47%	2148.0	6.66%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.616e-01	1.0000	263.0	1.59%	544.9	1.69%
bZIP50(bZIP)/colamp-bZIP50-DAP-Seq(GSE60143)/Homer	GATGACGTCA	1e0	-1.552e-01	1.0000	924.0	5.57%	1858.4	5.76%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e0	-1.546e-01	1.0000	292.0	1.76%	603.1	1.87%
ATHB23(ZFHD)/col-ATHB23-DAP-Seq(GSE60143)/Homer	HTAATTARNN	1e0	-1.512e-01	1.0000	1040.0	6.27%	2088.6	6.48%
At5g22890(C2H2)/col-At5g22890-DAP-Seq(GSE60143)/Homer	NSAGGTKWTATCTGD	1e0	-1.508e-01	1.0000	39.0	0.24%	89.6	0.28%
At5g58900(MYBrelated)/colamp-At5g58900-DAP-Seq(GSE60143)/Homer	WWWTYTTATCTWWWW	1e0	-1.479e-01	1.0000	1607.0	9.69%	3206.5	9.94%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.416e-01	1.0000	174.0	1.05%	367.8	1.14%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-1.412e-01	1.0000	339.0	2.04%	699.8	2.17%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-1.401e-01	1.0000	1459.0	8.80%	2917.9	9.05%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-1.400e-01	1.0000	1525.0	9.20%	3047.5	9.45%
ZML2(C2C2gata)/col-ZML2-DAP-Seq(GSE60143)/Homer	CATCATCATC	1e0	-1.335e-01	1.0000	222.0	1.34%	465.7	1.44%
GT3a(Trihelix)/col-GT3a-DAP-Seq(GSE60143)/Homer	WNACACGTGTYWWAW	1e0	-1.332e-01	1.0000	145.0	0.87%	309.7	0.96%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-1.299e-01	1.0000	2015.0	12.15%	4014.6	12.45%
TGA1(bZIP)/colamp-TGA1-DAP-Seq(GSE60143)/Homer	TGACGTCAKC	1e0	-1.284e-01	1.0000	339.0	2.04%	701.6	2.18%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.170e-01	1.0000	352.0	2.12%	729.5	2.26%
BOS1(MYB)/col-BOS1-DAP-Seq(GSE60143)/Homer	NNRCCTAACT	1e0	-1.099e-01	1.0000	1093.0	6.59%	2204.7	6.84%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e0	-1.083e-01	1.0000	642.0	3.87%	1310.8	4.07%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.081e-01	1.0000	296.0	1.79%	619.0	1.92%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-1.081e-01	1.0000	3355.0	20.24%	6652.1	20.63%
AtIDD11(C2H2)/colamp-AtIDD11-DAP-Seq(GSE60143)/Homer	TTTGTCGTTT	1e0	-1.067e-01	1.0000	367.0	2.21%	761.2	2.36%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-1.033e-01	1.0000	671.0	4.05%	1369.8	4.25%
ATHB25(ZFHD)/colamp-ATHB25-DAP-Seq(GSE60143)/Homer	TAATTAVB	1e0	-1.012e-01	1.0000	1304.0	7.87%	2624.1	8.14%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-9.967e-02	1.0000	3117.0	18.80%	6190.4	19.20%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-9.926e-02	1.0000	481.0	2.90%	992.0	3.08%
ATHB15(HB)/col-ATHB15-DAP-Seq(GSE60143)/Homer	GYAATSATTA	1e0	-9.825e-02	1.0000	309.0	1.86%	646.9	2.01%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e0	-9.731e-02	1.0000	1925.0	11.61%	3850.5	11.94%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-9.691e-02	1.0000	2352.0	14.19%	4690.9	14.55%
AGL95(ND)/col-AGL95-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-9.559e-02	1.0000	135.0	0.81%	293.9	0.91%
AT1G10720(BSD)/col-AT1G10720-DAP-Seq(GSE60143)/Homer	TTCTAGAAKCTTCTA	1e0	-9.546e-02	1.0000	36.0	0.22%	86.7	0.27%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-9.386e-02	1.0000	227.0	1.37%	481.3	1.49%
MGP(C2H2)/colamp-MGP-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTW	1e0	-9.093e-02	1.0000	211.0	1.27%	449.3	1.39%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-8.975e-02	1.0000	107.0	0.65%	237.0	0.74%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-8.887e-02	1.0000	865.0	5.22%	1759.4	5.46%
ANAC053(NAC)/colamp-ANAC053-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e0	-8.727e-02	1.0000	569.0	3.43%	1170.9	3.63%
HSFA6A(HSF)/col-HSFA6A-DAP-Seq(GSE60143)/Homer	RGAAGNTTCTAGAAN	1e0	-8.594e-02	1.0000	59.0	0.36%	136.8	0.42%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-8.581e-02	1.0000	420.0	2.53%	872.3	2.71%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e0	-8.261e-02	1.0000	669.0	4.04%	1371.8	4.25%
At1g49010(MYBrelated)/col-At1g49010-DAP-Seq(GSE60143)/Homer	RGATAASNTT	1e0	-8.065e-02	1.0000	2089.0	12.60%	4181.2	12.97%
bZIP42(bZIP)/colamp-bZIP42-DAP-Seq(GSE60143)/Homer	GCCACGTCAGCA	1e0	-7.952e-02	1.0000	1.0	0.01%	5.4	0.02%
VRN1(ABI3VP1)/col-VRN1-DAP-Seq(GSE60143)/Homer	TTTTTTTTTT	1e0	-7.952e-02	1.0000	1.0	0.01%	5.8	0.02%
MYB4(MYB)/col200-MYB4-DAP-Seq(GSE60143)/Homer	WAGKTAGGTARR	1e0	-7.888e-02	1.0000	706.0	4.26%	1446.1	4.48%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-7.670e-02	1.0000	653.0	3.94%	1341.2	4.16%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-7.614e-02	1.0000	2355.0	14.20%	4707.1	14.60%
bHLH74(bHLH)/col-bHLH74-DAP-Seq(GSE60143)/Homer	DRATCACGTGAB	1e0	-7.358e-02	1.0000	340.0	2.05%	714.7	2.22%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-7.303e-02	1.0000	1186.0	7.15%	2402.8	7.45%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e0	-7.205e-02	1.0000	3793.0	22.88%	7532.0	23.36%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-7.183e-02	1.0000	197.0	1.19%	424.7	1.32%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-7.134e-02	1.0000	985.0	5.94%	2004.7	6.22%
MYB63(MYB)/col-MYB63-DAP-Seq(GSE60143)/Homer	BHYACCWACCHH	1e0	-6.772e-02	1.0000	542.0	3.27%	1122.4	3.48%
ANAC075(NAC)/col-ANAC075-DAP-Seq(GSE60143)/Homer	CTTSWWNWWSAAGYT	1e0	-6.552e-02	1.0000	333.0	2.01%	702.1	2.18%
SPL3(SBP)/colamp-SPL3-DAP-Seq(GSE60143)/Homer	WDTTGTACGGAH	1e0	-6.471e-02	1.0000	20.0	0.12%	53.7	0.17%
ANAC057(NAC)/colamp-ANAC057-DAP-Seq(GSE60143)/Homer	DVCKTGNNNNNCAMG	1e0	-6.448e-02	1.0000	772.0	4.66%	1583.3	4.91%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-6.446e-02	1.0000	255.0	1.54%	544.9	1.69%
MYB39(MYB)/col-MYB39-DAP-Seq(GSE60143)/Homer	WWAARKTAGGTGRAA	1e0	-6.335e-02	1.0000	148.0	0.89%	325.3	1.01%
ATHB34(ZFHD)/colamp-ATHB34-DAP-Seq(GSE60143)/Homer	TRATTARS	1e0	-6.221e-02	1.0000	903.0	5.45%	1845.9	5.72%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-6.151e-02	1.0000	515.0	3.11%	1070.7	3.32%
HSFC1(HSF)/col-HSFC1-DAP-Seq(GSE60143)/Homer	HTTCTAGAADCTTCT	1e0	-6.002e-02	1.0000	279.0	1.68%	594.4	1.84%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-5.748e-02	1.0000	108.0	0.65%	244.0	0.76%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-5.569e-02	1.0000	722.0	4.35%	1487.8	4.61%
CUC3(NAC)/col-CUC3-DAP-Seq(GSE60143)/Homer	TRCKTGWNNNACAMG	1e0	-5.541e-02	1.0000	299.0	1.80%	637.0	1.98%
CCA(Myb)/Arabidopsis-CCA.GFP-ChIP-Seq(GSE70533)/Homer	AGATATYTTT	1e0	-5.519e-02	1.0000	804.0	4.85%	1651.8	5.12%
ANAC103(NAC)/col-ANAC103-DAP-Seq(GSE60143)/Homer	AACTTGNWNWNCAAG	1e0	-5.398e-02	1.0000	395.0	2.38%	831.2	2.58%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-5.397e-02	1.0000	352.0	2.12%	744.7	2.31%
ANAC020(NAC)/col-ANAC020-DAP-Seq(GSE60143)/Homer	DVCKTGHNNNDCAAG	1e0	-5.326e-02	1.0000	635.0	3.83%	1314.3	4.08%
AT1G04880(ARID)/colamp-AT1G04880-DAP-Seq(GSE60143)/Homer	AAACTATATADTATA	1e0	-5.285e-02	1.0000	99.0	0.60%	225.5	0.70%
HSFA6B(HSF)/colamp-HSFA6B-DAP-Seq(GSE60143)/Homer	NTTCTAGAANHTTCT	1e0	-5.135e-02	1.0000	678.0	4.09%	1401.7	4.35%
GBF6(bZIP)/colamp-GBF6-DAP-Seq(GSE60143)/Homer	WWTGMCACGTCABCW	1e0	-4.768e-02	1.0000	219.0	1.32%	475.9	1.48%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-4.577e-02	1.0000	1692.0	10.21%	3420.6	10.61%
TCP16(TCP)/colamp-TCP16-DAP-Seq(GSE60143)/Homer	GTGGDCCYNNNNNNN	1e0	-4.554e-02	1.0000	1111.0	6.70%	2268.9	7.04%
At5g08520(MYBrelated)/colamp-At5g08520-DAP-Seq(GSE60143)/Homer	ADBSTTATCY	1e0	-4.543e-02	1.0000	1118.0	6.74%	2282.5	7.08%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-4.510e-02	1.0000	288.0	1.74%	617.6	1.92%
CUC1(NAC)/col-CUC1-DAP-Seq(GSE60143)/Homer	TACTTGTNNNACAAG	1e0	-4.227e-02	1.0000	411.0	2.48%	868.9	2.70%
HSF21(HSF)/col-HSF21-DAP-Seq(GSE60143)/Homer	CTTCTAGAAGMTTYW	1e0	-4.091e-02	1.0000	133.0	0.80%	299.3	0.93%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-4.079e-02	1.0000	274.0	1.65%	590.2	1.83%
ANAC050(NAC)/colamp-ANAC050-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAAG	1e0	-4.046e-02	1.0000	593.0	3.58%	1236.7	3.84%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-3.873e-02	1.0000	13.0	0.08%	39.9	0.12%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-3.752e-02	1.0000	403.0	2.43%	854.4	2.65%
AT2G01818(PLATZ)/col-AT2G01818-DAP-Seq(GSE60143)/Homer	TCTAGAABSTTC	1e0	-3.704e-02	1.0000	210.0	1.27%	460.9	1.43%
MYB116(MYB)/colamp-MYB116-DAP-Seq(GSE60143)/Homer	AGTTAGGCAN	1e0	-3.606e-02	1.0000	840.0	5.07%	1734.3	5.38%
GBF5(bZIP)/colamp-GBF5-DAP-Seq(GSE60143)/Homer	WKNWSACGTGGCAWN	1e0	-3.406e-02	1.0000	324.0	1.95%	695.1	2.16%
bZIP48(bZIP)/colamp-bZIP48-DAP-Seq(GSE60143)/Homer	DDWWKVTSACGTGGC	1e0	-3.384e-02	1.0000	347.0	2.09%	742.9	2.30%
bHLH18(bHLH)/col-bHLH18-DAP-Seq(GSE60143)/Homer	CACGTGTTYCACGTG	1e0	-3.382e-02	1.0000	14.0	0.08%	43.0	0.13%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-3.381e-02	1.0000	1561.0	9.42%	3171.9	9.84%
bHLH28(bHLH)/col-bHLH28-DAP-Seq(GSE60143)/Homer	NHHTGTACGGAH	1e0	-3.251e-02	1.0000	160.0	0.97%	358.2	1.11%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-3.164e-02	1.0000	644.0	3.88%	1344.6	4.17%
CUC2(NAC)/colamp-CUC2-DAP-Seq(GSE60143)/Homer	TRCKTGTNNNWCAMG	1e0	-3.105e-02	1.0000	291.0	1.76%	629.5	1.95%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-3.050e-02	1.0000	660.0	3.98%	1377.7	4.27%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-2.989e-02	1.0000	212.0	1.28%	467.5	1.45%
HSF7(HSF)/colamp-HSF7-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-2.946e-02	1.0000	240.0	1.45%	525.8	1.63%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-2.811e-02	1.0000	1091.0	6.58%	2242.7	6.96%
Replumless(BLH)/Arabidopsis-RPL.GFP-ChIP-Seq(GSE78727)/Homer	HGTCWHATCA	1e0	-2.730e-02	1.0000	1218.0	7.35%	2496.9	7.74%
MS188(MYB)/colamp-MS188-DAP-Seq(GSE60143)/Homer	WARKTAGGTRRA	1e0	-2.722e-02	1.0000	839.0	5.06%	1740.0	5.40%
ANAC094(NAC)/col-ANAC094-DAP-Seq(GSE60143)/Homer	DVCGTRNNNNNYACG	1e0	-2.685e-02	1.0000	351.0	2.12%	754.2	2.34%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-2.639e-02	1.0000	585.0	3.53%	1229.0	3.81%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-2.434e-02	1.0000	385.0	2.32%	825.6	2.56%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-2.408e-02	1.0000	118.0	0.71%	273.9	0.85%
TGA6(bZIP)/colamp-TGA6-DAP-Seq(GSE60143)/Homer	TGACGTCABC	1e0	-2.181e-02	1.0000	508.0	3.06%	1077.9	3.34%
MYB13(MYB)/col-MYB13-DAP-Seq(GSE60143)/Homer	HYCACCWACCHH	1e0	-1.853e-02	1.0000	824.0	4.97%	1718.8	5.33%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-1.713e-02	1.0000	464.0	2.80%	992.3	3.08%
HY5(bZIP)/colamp-HY5-DAP-Seq(GSE60143)/Homer	RRTSACGTSD	1e0	-1.494e-02	1.0000	834.0	5.03%	1743.2	5.41%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-1.441e-02	1.0000	374.0	2.26%	811.9	2.52%
BPC1(BBRBPC)/colamp-BPC1-DAP-Seq(GSE60143)/Homer	GARGAGAGAGAA	1e0	-1.392e-02	1.0000	792.0	4.78%	1660.5	5.15%
ANAC092(NAC)/colamp-ANAC092-DAP-Seq(GSE60143)/Homer	WRCKTGWNNNWCAMG	1e0	-1.387e-02	1.0000	382.0	2.30%	828.7	2.57%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-1.345e-02	1.0000	35.0	0.21%	96.6	0.30%
FAR1(FAR1)/col-FAR1-DAP-Seq(GSE60143)/Homer	TKNNNYYCACGCGCY	1e0	-1.168e-02	1.0000	149.0	0.90%	346.3	1.07%
ANAC087(NAC)/col-ANAC087-DAP-Seq(GSE60143)/Homer	WVCKTGHNNNWCAMG	1e0	-1.157e-02	1.0000	261.0	1.57%	581.8	1.80%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e0	-1.118e-02	1.0000	310.0	1.87%	683.4	2.12%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-1.088e-02	1.0000	906.0	5.46%	1895.3	5.88%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-1.086e-02	1.0000	1286.0	7.76%	2657.6	8.24%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.061e-02	1.0000	1475.0	8.90%	3035.1	9.41%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e0	-1.045e-02	1.0000	1266.0	7.64%	2619.0	8.12%
bZIP53(bZIP)/colamp-bZIP53-DAP-Seq(GSE60143)/Homer	NDNHSACGTGKMNNN	1e0	-1.042e-02	1.0000	341.0	2.06%	748.3	2.32%
MYB74(MYB)/colamp-MYB74-DAP-Seq(GSE60143)/Homer	YYYACCTACCWH	1e0	-1.035e-02	1.0000	684.0	4.13%	1448.7	4.49%
PIF7(bHLH)/col-PIF7-DAP-Seq(GSE60143)/Homer	CCACGTGGNH	1e0	-9.246e-03	1.0000	275.0	1.66%	613.8	1.90%
O2(bZIP)/Corn-O2-ChIP-Seq(GSE63991)/Homer	GCTGACGTGGCA	1e0	-9.107e-03	1.0000	153.0	0.92%	357.4	1.11%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-8.450e-03	1.0000	814.0	4.91%	1715.4	5.32%
TCP17(TCP)/col-TCP17-DAP-Seq(GSE60143)/Homer	GTGGTCCCCA	1e0	-8.277e-03	1.0000	79.0	0.48%	198.7	0.62%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e0	-8.004e-03	1.0000	2382.0	14.37%	4846.8	15.03%
SPL5(SBP)/colamp-SPL5-DAP-Seq(GSE60143)/Homer	NNHGTACGGHNN	1e0	-6.884e-03	1.0000	290.0	1.75%	648.5	2.01%
At5g08330(TCP)/col-At5g08330-DAP-Seq(GSE60143)/Homer	GGRCCCAC	1e0	-6.710e-03	1.0000	1088.0	6.56%	2273.0	7.05%
BZR1(BZR)/col-BZR1-DAP-Seq(GSE60143)/Homer	NNCRCACGTGCG	1e0	-6.671e-03	1.0000	119.0	0.72%	287.8	0.89%
DDF2(AP2EREBP)/col-DDF2-DAP-Seq(GSE60143)/Homer	GATGTCGRCR	1e0	-6.484e-03	1.0000	13.0	0.08%	46.3	0.14%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-6.371e-03	1.0000	44.0	0.27%	121.6	0.38%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-5.863e-03	1.0000	658.0	3.97%	1406.6	4.36%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-4.809e-03	1.0000	1925.0	11.61%	3954.3	12.26%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-4.515e-03	1.0000	184.0	1.11%	430.9	1.34%
bZIP28(bZIP)/col-bZIP28-DAP-Seq(GSE60143)/Homer	TGCCACGTSABH	1e0	-4.494e-03	1.0000	286.0	1.73%	645.5	2.00%
AREB3(bZIP)/col-AREB3-DAP-Seq(GSE60143)/Homer	NKGMCACGTGDCMNN	1e0	-4.470e-03	1.0000	320.0	1.93%	716.4	2.22%
SPL14(SBP)/col-SPL14-DAP-Seq(GSE60143)/Homer	NNWHTGTACGGAHNH	1e0	-4.264e-03	1.0000	89.0	0.54%	225.1	0.70%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-3.972e-03	1.0000	1038.0	6.26%	2183.1	6.77%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-3.728e-03	1.0000	586.0	3.53%	1267.1	3.93%
At1g72010(TCP)/colamp-At1g72010-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e0	-3.689e-03	1.0000	910.0	5.49%	1926.3	5.97%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-3.619e-03	1.0000	290.0	1.75%	656.8	2.04%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-3.400e-03	1.0000	376.0	2.27%	836.5	2.59%
SPL13(SBP)/col-SPL13-DAP-Seq(GSE60143)/Homer	WAHTGTACGGAH	1e0	-3.289e-03	1.0000	42.0	0.25%	120.4	0.37%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e0	-3.018e-03	1.0000	1256.0	7.58%	2628.4	8.15%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-2.910e-03	1.0000	460.0	2.77%	1012.5	3.14%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-2.818e-03	1.0000	2248.0	13.56%	4612.1	14.30%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-2.792e-03	1.0000	368.0	2.22%	822.9	2.55%
HSFB4(HSF)/col-HSFB4-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-2.671e-03	1.0000	39.0	0.24%	114.1	0.35%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e0	-2.338e-03	1.0000	389.0	2.35%	868.1	2.69%
At4g36780(BZR)/col-At4g36780-DAP-Seq(GSE60143)/Homer	NNNNNNCACGTGNNN	1e0	-2.319e-03	1.0000	363.0	2.19%	814.2	2.53%
ATAF1(NAC)/col-ATAF1-DAP-Seq(GSE60143)/Homer	YACGTMAY	1e0	-2.239e-03	1.0000	2836.0	17.11%	5786.4	17.95%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-1.996e-03	1.0000	711.0	4.29%	1533.2	4.76%
At5g05790(MYBrelated)/col-At5g05790-DAP-Seq(GSE60143)/Homer	AYCTTATC	1e0	-1.938e-03	1.0000	891.0	5.37%	1901.0	5.90%
BAM8(BES1)/col-BAM8-DAP-Seq(GSE60143)/Homer	NNWSACACGTGTSWN	1e0	-1.819e-03	1.0000	142.0	0.86%	348.3	1.08%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-1.515e-03	1.0000	156.0	0.94%	380.8	1.18%
ABF1(bZIP)/Arabidopsis-ABF1-ChIP-Seq(GSE80564)/Homer	CACGTGGC	1e0	-1.513e-03	1.0000	1244.0	7.50%	2619.3	8.12%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-1.391e-03	1.0000	5693.0	34.34%	11428.2	35.44%
At3g11280(MYBrelated)/col-At3g11280-DAP-Seq(GSE60143)/Homer	GATAAGRT	1e0	-1.364e-03	1.0000	848.0	5.11%	1819.5	5.64%
TCP20(TCP)/col-TCP20-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e0	-1.362e-03	1.0000	661.0	3.99%	1437.6	4.46%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-1.287e-03	1.0000	76.0	0.46%	204.1	0.63%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.276e-03	1.0000	680.0	4.10%	1477.7	4.58%
bZIP3(bZIP)/col-bZIP3-DAP-Seq(GSE60143)/Homer	DWKNHSACGTGGCAD	1e0	-1.114e-03	1.0000	495.0	2.99%	1098.1	3.41%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e0	-9.600e-04	1.0000	186.0	1.12%	449.3	1.39%
BPC6(BBRBPC)/col-BPC6-DAP-Seq(GSE60143)/Homer	YTYTCTCTCTCTCTA	1e0	-8.510e-04	1.0000	17.0	0.10%	64.7	0.20%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e0	-8.030e-04	1.0000	1477.0	8.91%	3102.5	9.62%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e0	-7.960e-04	1.0000	1545.0	9.32%	3239.9	10.05%
At1g78700(BZR)/col-At1g78700-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNNNNN	1e0	-7.800e-04	1.0000	369.0	2.23%	840.8	2.61%
FEA4(bZIP)/Corn-FEA4-ChIP-Seq(GSE61954)/Homer	TGACGTCACS	1e0	-7.760e-04	1.0000	1163.0	7.01%	2469.6	7.66%
GBF3(bZIP)/Arabidopsis-GBF3-ChIP-Seq(GSE80564)/Homer	TGCCACGTSAYC	1e0	-7.210e-04	1.0000	446.0	2.69%	1002.6	3.11%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-7.010e-04	1.0000	768.0	4.63%	1667.9	5.17%
TCP7(TCP)/col-TCP7-DAP-Seq(GSE60143)/Homer	GTGGGSCCCACHHNN	1e0	-6.290e-04	1.0000	937.0	5.65%	2014.4	6.25%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-6.170e-04	1.0000	231.0	1.39%	550.7	1.71%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e0	-5.470e-04	1.0000	387.0	2.33%	882.5	2.74%
bZIP16(bZIP)/colamp-bZIP16-DAP-Seq(GSE60143)/Homer	TGCCACGTGD	1e0	-5.120e-04	1.0000	299.0	1.80%	697.2	2.16%
HSFA1E(HSF)/col-HSFA1E-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-4.860e-04	1.0000	97.0	0.59%	258.9	0.80%
BIM2(bHLH)/col-BIM2-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNN	1e0	-4.800e-04	1.0000	970.0	5.85%	2086.1	6.47%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-4.690e-04	1.0000	1042.0	6.29%	2233.5	6.93%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-4.660e-04	1.0000	69.0	0.42%	194.5	0.60%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-4.660e-04	1.0000	69.0	0.42%	194.5	0.60%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-4.580e-04	1.0000	282.0	1.70%	662.7	2.06%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-4.210e-04	1.0000	1734.0	10.46%	3633.2	11.27%
AT1G23810(Orphan)/col-AT1G23810-DAP-Seq(GSE60143)/Homer	TTCTAGAAGSTTCTA	1e0	-3.650e-04	1.0000	49.0	0.30%	148.1	0.46%
bZIP68(bZIP)/col-bZIP68-DAP-Seq(GSE60143)/Homer	WGCCACGTGK	1e0	-2.560e-04	1.0000	371.0	2.24%	857.7	2.66%
At4g18890(BZR)/col-At4g18890-DAP-Seq(GSE60143)/Homer	NDBRCACGTGYR	1e0	-9.400e-05	1.0000	209.0	1.26%	519.1	1.61%
Knotted(Homeobox)/Corn-KN1-ChIP-Seq(GSE39161)/Homer	GAYGNGACRGGN	1e0	-9.000e-05	1.0000	1829.0	11.03%	3857.2	11.96%
AT3G57600(AP2EREBP)/col-AT3G57600-DAP-Seq(GSE60143)/Homer	GGCGGTGG	1e0	-8.000e-05	1.0000	1293.0	7.80%	2775.3	8.61%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-6.500e-05	1.0000	145.0	0.87%	380.5	1.18%
TF3A(C2H2)/col-TF3A-DAP-Seq(GSE60143)/Homer	NNDDGAGGAGGWNNN	1e0	-6.300e-05	1.0000	1957.0	11.80%	4122.8	12.79%
SeqBias: CA-repeat	CACACACACA	1e0	-6.300e-05	1.0000	7310.0	44.09%	14693.4	45.57%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e0	-5.300e-05	1.0000	582.0	3.51%	1319.2	4.09%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-2.000e-05	1.0000	2295.0	13.84%	4826.5	14.97%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-1.300e-05	1.0000	545.0	3.29%	1258.5	3.90%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-1.000e-05	1.0000	1932.0	11.65%	4108.4	12.74%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-9.000e-06	1.0000	467.0	2.82%	1096.8	3.40%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-7.000e-06	1.0000	597.0	3.60%	1375.8	4.27%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-4.000e-06	1.0000	242.0	1.46%	617.5	1.92%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-2.000e-06	1.0000	1399.0	8.44%	3055.7	9.48%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e0	-1.000e-06	1.0000	2802.0	16.90%	5906.5	18.32%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-0.000e+00	1.0000	1734.0	10.46%	3766.4	11.68%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e0	-0.000e+00	1.0000	1190.0	7.18%	2666.6	8.27%
ABI5(bZIP)/col-ABI5-DAP-Seq(GSE60143)/Homer	GCCACGTG	1e0	-0.000e+00	1.0000	475.0	2.87%	1165.9	3.62%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-0.000e+00	1.0000	2306.0	13.91%	4963.5	15.39%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-0.000e+00	1.0000	3317.0	20.01%	7040.6	21.84%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-0.000e+00	1.0000	2272.0	13.70%	4944.1	15.33%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-0.000e+00	1.0000	2482.0	14.97%	5480.5	17.00%
AT4G12670(MYBrelated)/col-AT4G12670-DAP-Seq(GSE60143)/Homer	AGGGTTTAGGGTTTA	1e0	0.000e+00	1.0000	0.0	0.00%	0.8	0.00%