Information for 5-GCCAATAG (Motif 4)

A C T G A G T C A T G C C G T A G T C A A C G T C G T A A C T G
Reverse Opposite:
A G T C A C G T C G T A A C G T A C G T A T C G A C T G G T A C
p-value:1e-521
log p-value:-1.201e+03
Information Content per bp:1.910
Number of Target Sequences with motif1065.0
Percentage of Target Sequences with motif5.78%
Number of Background Sequences with motif248.1
Percentage of Background Sequences with motif0.81%
Average Position of motif in Targets106.6 +/- 56.7bp
Average Position of motif in Background96.0 +/- 58.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HAP2/Literature(Harbison)/Yeast

Match Rank:1
Score:0.78
Offset:1
Orientation:forward strand
Alignment:GCCAATAG
-CCAAT--
 A C T G A G T C A T G C C G T A G T C A A C G T C G T A A C T G
A C G T A G T C A G T C C G T A C G T A A C G T A C G T A C G T

HAP3/Literature(Harbison)/Yeast

Match Rank:2
Score:0.78
Offset:1
Orientation:forward strand
Alignment:GCCAATAG
-CCAAT--
 A C T G A G T C A T G C C G T A G T C A A C G T C G T A A C T G
A C G T A G T C A G T C C G T A C G T A A C G T A C G T A C G T

HAP5/Literature(Harbison)/Yeast

Match Rank:3
Score:0.78
Offset:1
Orientation:forward strand
Alignment:GCCAATAG
-CCAAT--
 A C T G A G T C A T G C C G T A G T C A A C G T C G T A A C T G
A C G T A G T C A G T C C G T A C G T A A C G T A C G T A C G T

HAP5(MacIsaac)/Yeast

Match Rank:4
Score:0.78
Offset:1
Orientation:forward strand
Alignment:GCCAATAG
-CCAAT--
 A C T G A G T C A T G C C G T A G T C A A C G T C G T A A C T G
A C G T A G T C A G T C C G T A C G T A A C G T A C G T A C G T

HAP3(MacIsaac)/Yeast

Match Rank:5
Score:0.78
Offset:1
Orientation:forward strand
Alignment:GCCAATAG
-CCAAT--
 A C T G A G T C A T G C C G T A G T C A A C G T C G T A A C T G
A C G T A G T C A G T C C G T A C G T A A C G T A C G T A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:6
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-GCCAATAG-
AGCCAATCGG
 A C G T A C T G A G T C A T G C C G T A G T C A A C G T C G T A A C T G A C G T
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

NFIC/MA0161.1/Jaspar

Match Rank:7
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-GCCAATAG
TGCCAA---
 A C G T A C T G A G T C A T G C C G T A G T C A A C G T C G T A A C T G
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:8
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----GCCAATAG
ACTAGCCAATCA
 A C G T A C G T A C G T A C G T A C T G A G T C A T G C C G T A G T C A A C G T C G T A A C T G
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

br(var.2)/MA0011.1/Jaspar

Match Rank:9
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:GCCAATAG--
--AAATAGTA
 A C T G A G T C A T G C C G T A G T C A A C G T C G T A A C T G A C G T A C G T
A C G T A C G T C T G A G C T A G T C A A C G T C T G A C T A G C G A T C G T A

NFIX/MA0671.1/Jaspar

Match Rank:10
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---GCCAATAG
CGTGCCAAG--
 A C G T A C G T A C G T A C T G A G T C A T G C C G T A G T C A A C G T C G T A A C T G
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T