Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 18421)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 30478)	% of Background Sequences with Motif
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-16200	-3.730e+04	0.0000	11456.0	62.19%	408.4	1.34%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-13098	-3.016e+04	0.0000	11819.0	64.16%	874.6	2.87%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-405	-9.345e+02	0.0000	439.0	2.38%	34.4	0.11%
E2FA(E2FDP)/colamp-E2FA-DAP-Seq(GSE60143)/Homer	WWTGGCGCCAWWWNN	1e-310	-7.145e+02	0.0000	1799.0	9.77%	1085.8	3.56%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-201	-4.651e+02	0.0000	2434.0	13.21%	2100.5	6.89%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-191	-4.419e+02	0.0000	2750.0	14.93%	2533.0	8.31%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-168	-3.888e+02	0.0000	2670.0	14.50%	2535.0	8.31%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-124	-2.871e+02	0.0000	5410.0	29.37%	6664.2	21.86%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-124	-2.863e+02	0.0000	6325.0	34.34%	8049.4	26.40%
SeqBias: CG bias	SSSSSSSSSS	1e-121	-2.790e+02	0.0000	15683.0	85.14%	23880.3	78.33%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-104	-2.411e+02	0.0000	4058.0	22.03%	4844.2	15.89%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-79	-1.820e+02	0.0000	9699.0	52.65%	13935.9	45.71%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-74	-1.721e+02	0.0000	4436.0	24.08%	5682.8	18.64%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-70	-1.614e+02	0.0000	6745.0	36.62%	9297.0	30.49%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e-67	-1.565e+02	0.0000	4849.0	26.32%	6382.1	20.93%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-63	-1.456e+02	0.0000	2814.0	15.28%	3407.3	11.18%
bZIP18(bZIP)/colamp-bZIP18-DAP-Seq(GSE60143)/Homer	KGMCAGCTND	1e-47	-1.105e+02	0.0000	10529.0	57.16%	15789.7	51.79%
SeqBias: polyC-repeat	CCCCCCCCCC	1e-43	-1.011e+02	0.0000	18265.0	99.16%	29830.6	97.84%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-42	-9.884e+01	0.0000	6386.0	34.67%	9129.4	29.94%
At3g60580(C2H2)/col-At3g60580-DAP-Seq(GSE60143)/Homer	WTTYTACT	1e-41	-9.529e+01	0.0000	9169.0	49.78%	13658.8	44.80%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-38	-8.823e+01	0.0000	3880.0	21.06%	5285.9	17.34%
DEL2(E2FDP)/col-DEL2-DAP-Seq(GSE60143)/Homer	WTTTCSCGCC	1e-37	-8.578e+01	0.0000	826.0	4.48%	851.8	2.79%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e-35	-8.254e+01	0.0000	1872.0	10.16%	2314.3	7.59%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-33	-7.685e+01	0.0000	4031.0	21.88%	5593.9	18.35%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-33	-7.601e+01	0.0000	1267.0	6.88%	1480.4	4.86%
SeqBias: polyA-repeat	AAAAAAAAAA	1e-32	-7.385e+01	0.0000	17662.0	95.88%	28630.1	93.90%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-31	-7.270e+01	0.0000	1258.0	6.83%	1480.3	4.86%
NGA4(ABI3VP1)/col-NGA4-DAP-Seq(GSE60143)/Homer	TKNTCAGGTG	1e-31	-7.251e+01	0.0000	5998.0	32.56%	8718.8	28.60%
AZF1(C2H2)/colamp-AZF1-DAP-Seq(GSE60143)/Homer	DKSWCACT	1e-31	-7.246e+01	0.0000	9626.0	52.26%	14612.7	47.93%
JGL(C2H2)/col-JGL-DAP-Seq(GSE60143)/Homer	ACYTTCAGTT	1e-30	-7.044e+01	0.0000	2638.0	14.32%	3508.4	11.51%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-28	-6.453e+01	0.0000	7480.0	40.61%	11174.7	36.65%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-27	-6.219e+01	0.0000	4991.0	27.10%	7208.3	23.64%
At1g75490(AP2EREBP)/colamp-At1g75490-DAP-Seq(GSE60143)/Homer	CACCGMCT	1e-26	-6.194e+01	0.0000	3096.0	16.81%	4258.4	13.97%
SeqBias: A/T bias	WWWWWWWWWW	1e-24	-5.607e+01	0.0000	12836.0	69.69%	20163.0	66.13%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e-22	-5.261e+01	0.0000	1862.0	10.11%	2452.7	8.04%
CRF4(AP2EREBP)/colamp-CRF4-DAP-Seq(GSE60143)/Homer	CGCCGCCA	1e-22	-5.161e+01	0.0000	1441.0	7.82%	1836.5	6.02%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-22	-5.110e+01	0.0000	2328.0	12.64%	3162.7	10.37%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e-21	-5.010e+01	0.0000	334.0	1.81%	310.8	1.02%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e-21	-4.877e+01	0.0000	12661.0	68.74%	19943.2	65.41%
At5g62940(C2C2dof)/col-At5g62940-DAP-Seq(GSE60143)/Homer	WHWHHACTTTTT	1e-19	-4.463e+01	0.0000	5665.0	30.75%	8451.0	27.72%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-19	-4.399e+01	0.0000	953.0	5.17%	1167.4	3.83%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-18	-4.300e+01	0.0000	2437.0	13.23%	3386.7	11.11%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-18	-4.269e+01	0.0000	1114.0	6.05%	1405.4	4.61%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-17	-3.970e+01	0.0000	659.0	3.58%	770.0	2.53%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-17	-3.925e+01	0.0000	998.0	5.42%	1254.3	4.11%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-16	-3.914e+01	0.0000	1019.0	5.53%	1285.8	4.22%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-16	-3.876e+01	0.0000	1506.0	8.18%	2005.2	6.58%
ERF105(AP2EREBP)/colamp-ERF105-DAP-Seq(GSE60143)/Homer	TGGCGGCT	1e-16	-3.790e+01	0.0000	3022.0	16.41%	4333.8	14.21%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-16	-3.763e+01	0.0000	1930.0	10.48%	2652.8	8.70%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-15	-3.609e+01	0.0000	1752.0	9.51%	2393.4	7.85%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-15	-3.562e+01	0.0000	2572.0	13.96%	3654.8	11.99%
Tal1	CATCTG	1e-15	-3.552e+01	0.0000	2605.0	14.14%	3707.0	12.16%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-15	-3.472e+01	0.0000	3074.0	16.69%	4444.8	14.58%
OBP3(C2C2dof)/col-OBP3-DAP-Seq(GSE60143)/Homer	NYWACTTTTT	1e-14	-3.438e+01	0.0000	5018.0	27.24%	7529.3	24.70%
AT1G28160(AP2EREBP)/colamp-AT1G28160-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e-14	-3.405e+01	0.0000	3846.0	20.88%	5667.0	18.59%
MYB101(MYB)/colamp-MYB101-DAP-Seq(GSE60143)/Homer	TAACNRMY	1e-14	-3.401e+01	0.0000	3115.0	16.91%	4515.4	14.81%
ASHR1(ND)/col-ASHR1-DAP-Seq(GSE60143)/Homer	NTGGTGAN	1e-14	-3.395e+01	0.0000	2293.0	12.45%	3237.3	10.62%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-14	-3.330e+01	0.0000	74.0	0.40%	42.3	0.14%
ERF7(AP2EREBP)/col-ERF7-DAP-Seq(GSE60143)/Homer	ATGRCGGCGG	1e-14	-3.317e+01	0.0000	2460.0	13.36%	3502.2	11.49%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-14	-3.293e+01	0.0000	2619.0	14.22%	3751.7	12.31%
ERF15(AP2EREBP)/colamp-ERF15-DAP-Seq(GSE60143)/Homer	WDHAGCMGCCAT	1e-14	-3.288e+01	0.0000	4598.0	24.96%	6875.3	22.55%
CRF10(AP2EREBP)/col100-CRF10-DAP-Seq(GSE60143)/Homer	DCCGCCGYHA	1e-14	-3.281e+01	0.0000	2525.0	13.71%	3606.4	11.83%
AT5G47660(Trihelix)/colamp-AT5G47660-DAP-Seq(GSE60143)/Homer	AWTTTTACCG	1e-14	-3.275e+01	0.0000	2169.0	11.78%	3056.9	10.03%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-14	-3.267e+01	0.0000	151.0	0.82%	124.8	0.41%
AT5G63260(C3H)/col-AT5G63260-DAP-Seq(GSE60143)/Homer	RAAAAAGTRA	1e-14	-3.265e+01	0.0000	3832.0	20.80%	5659.6	18.56%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e-13	-3.218e+01	0.0000	1304.0	7.08%	1745.2	5.72%
AT2G28810(C2C2dof)/colamp-AT2G28810-DAP-Seq(GSE60143)/Homer	VAAAAAGTWA	1e-13	-3.197e+01	0.0000	3913.0	21.24%	5795.5	19.01%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-13	-3.175e+01	0.0000	2646.0	14.36%	3804.3	12.48%
AT5G05550(Trihelix)/col-AT5G05550-DAP-Seq(GSE60143)/Homer	HDNHDTCKCCGGMGA	1e-13	-3.172e+01	0.0000	2460.0	13.36%	3515.2	11.53%
LBD18(LOBAS2)/colamp-LBD18-DAP-Seq(GSE60143)/Homer	CKGAWWTTCHGS	1e-13	-3.169e+01	0.0000	4098.0	22.25%	6092.8	19.98%
AT1G47655(C2C2dof)/colamp-AT1G47655-DAP-Seq(GSE60143)/Homer	YHACTTTTTS	1e-13	-3.076e+01	0.0000	5740.0	31.16%	8736.3	28.65%
AT3G52440(C2C2dof)/colamp-AT3G52440-DAP-Seq(GSE60143)/Homer	DTHACTTTTT	1e-13	-3.004e+01	0.0000	3746.0	20.34%	5552.6	18.21%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e-13	-2.996e+01	0.0000	4219.0	22.90%	6305.4	20.68%
CDF3(C2C2dof)/colamp-CDF3-DAP-Seq(GSE60143)/Homer	AAAAGTRM	1e-12	-2.975e+01	0.0000	2869.0	15.58%	4172.2	13.68%
OBP1(C2C2dof)/col-OBP1-DAP-Seq(GSE60143)/Homer	NHHACTTTWT	1e-12	-2.962e+01	0.0000	4492.0	24.39%	6745.5	22.12%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-12	-2.954e+01	0.0000	1532.0	8.32%	2107.4	6.91%
At2g33710(AP2EREBP)/colamp-At2g33710-DAP-Seq(GSE60143)/Homer	WTKGCGGCKR	1e-12	-2.949e+01	0.0000	3299.0	17.91%	4851.8	15.91%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-12	-2.944e+01	0.0000	99.0	0.54%	71.6	0.23%
LBD23(LOBAS2)/colamp-LBD23-DAP-Seq(GSE60143)/Homer	GCGNAWWWTNCGCYW	1e-12	-2.941e+01	0.0000	1557.0	8.45%	2146.5	7.04%
AT5G23930(mTERF)/col-AT5G23930-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e-12	-2.825e+01	0.0000	4019.0	21.82%	6007.8	19.71%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-12	-2.813e+01	0.0000	1250.0	6.79%	1691.9	5.55%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e-12	-2.810e+01	0.0000	361.0	1.96%	402.2	1.32%
ERF115(AP2EREBP)/colamp-ERF115-DAP-Seq(GSE60143)/Homer	WTKRCGGCGB	1e-12	-2.803e+01	0.0000	2885.0	15.66%	4215.7	13.83%
DEAR2(AP2EREBP)/colamp-DEAR2-DAP-Seq(GSE60143)/Homer	HCACCGACAWHD	1e-12	-2.795e+01	0.0000	1507.0	8.18%	2081.4	6.83%
MYB70(MYB)/col-MYB70-DAP-Seq(GSE60143)/Homer	WTAACNGTTA	1e-12	-2.770e+01	0.0000	2055.0	11.16%	2924.8	9.59%
ERF10(AP2EREBP)/col-ERF10-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e-12	-2.767e+01	0.0000	1522.0	8.26%	2106.3	6.91%
At5g04390(C2H2)/col200-At5g04390-DAP-Seq(GSE60143)/Homer	AGTGANDN	1e-11	-2.762e+01	0.0000	9420.0	51.14%	14801.9	48.55%
MYB73(MYB)/col-MYB73-DAP-Seq(GSE60143)/Homer	NNNNHAACNGHHDHN	1e-11	-2.759e+01	0.0000	2784.0	15.11%	4061.9	13.32%
At5g18450(AP2EREBP)/col-At5g18450-DAP-Seq(GSE60143)/Homer	CACCGCTT	1e-11	-2.756e+01	0.0000	3243.0	17.61%	4784.1	15.69%
MYB51(MYB)/col-MYB51-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e-11	-2.748e+01	0.0000	1475.0	8.01%	2036.8	6.68%
SeqBias: TA-repeat	TATATATATA	1e-11	-2.735e+01	0.0000	3611.0	19.60%	5369.4	17.61%
ESE1(AP2EREBP)/col-ESE1-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e-11	-2.658e+01	0.0000	1945.0	10.56%	2764.6	9.07%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-11	-2.652e+01	0.0000	3017.0	16.38%	4439.4	14.56%
HuR(?)/HEK293-HuR-CLIP-Seq(GSE87887)/Homer	BTTTGGTTTG	1e-11	-2.622e+01	0.0000	5186.0	28.15%	7904.4	25.93%
ERF13(AP2EREBP)/colamp-ERF13-DAP-Seq(GSE60143)/Homer	TYAGCCGCCATT	1e-11	-2.613e+01	0.0000	2127.0	11.55%	3050.8	10.01%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-11	-2.609e+01	0.0000	921.0	5.00%	1213.7	3.98%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-11	-2.607e+01	0.0000	6762.0	36.71%	10461.4	34.31%
ERF5(AP2EREBP)/colamp-ERF5-DAP-Seq(GSE60143)/Homer	DCMGCCGCCA	1e-11	-2.591e+01	0.0000	1082.0	5.87%	1454.7	4.77%
SOL1(CPP)/colamp-SOL1-DAP-Seq(GSE60143)/Homer	ATTTAAATHN	1e-11	-2.556e+01	0.0000	2200.0	11.94%	3169.1	10.39%
AT3G12130(C3H)/colamp-AT3G12130-DAP-Seq(GSE60143)/Homer	TMACTTTTTV	1e-11	-2.544e+01	0.0000	4054.0	22.01%	6098.4	20.00%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-10	-2.476e+01	0.0000	155.0	0.84%	143.0	0.47%
GTL1(Trihelix)/colamp-GTL1-DAP-Seq(GSE60143)/Homer	WWTTTACCKY	1e-10	-2.454e+01	0.0000	1640.0	8.90%	2312.4	7.58%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e-10	-2.403e+01	0.0000	801.0	4.35%	1048.8	3.44%
dof45(C2C2dof)/col-dof45-DAP-Seq(GSE60143)/Homer	NVAWAAAGTN	1e-10	-2.383e+01	0.0000	3955.0	21.47%	5961.8	19.55%
LBD19(LOBAS2)/colamp-LBD19-DAP-Seq(GSE60143)/Homer	CCKGAAWTTCMGGAW	1e-10	-2.382e+01	0.0000	2988.0	16.22%	4424.1	14.51%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-10	-2.371e+01	0.0000	1279.0	6.94%	1767.9	5.80%
AT1G69570(C2C2dof)/col-AT1G69570-DAP-Seq(GSE60143)/Homer	WAAAAGTGHH	1e-10	-2.364e+01	0.0000	1910.0	10.37%	2737.8	8.98%
TCX2(CPP)/colamp-TCX2-DAP-Seq(GSE60143)/Homer	NNWWTTYRAAHN	1e-10	-2.342e+01	0.0000	2235.0	12.13%	3245.6	10.65%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-10	-2.341e+01	0.0000	3057.0	16.60%	4538.8	14.89%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-10	-2.329e+01	0.0000	6894.0	37.43%	10720.6	35.16%
ERF11(AP2EREBP)/col-ERF11-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e-10	-2.319e+01	0.0000	1727.0	9.38%	2458.7	8.06%
At1g64620(C2C2dof)/colamp-At1g64620-DAP-Seq(GSE60143)/Homer	CACTTTTT	1e-10	-2.319e+01	0.0000	2457.0	13.34%	3595.4	11.79%
TCP1(TCP)/col-TCP1-DAP-Seq(GSE60143)/Homer	GGGGGCCCMMCN	1e-10	-2.313e+01	0.0000	1042.0	5.66%	1413.2	4.64%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-9	-2.302e+01	0.0000	288.0	1.56%	320.9	1.05%
ABR1(AP2EREBP)/colamp-ABR1-DAP-Seq(GSE60143)/Homer	AAATGGCGGCGG	1e-9	-2.277e+01	0.0000	1707.0	9.27%	2431.7	7.98%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-9	-2.238e+01	0.0000	2267.0	12.31%	3306.2	10.84%
COG1(C2C2dof)/col-COG1-DAP-Seq(GSE60143)/Homer	DAAAAAGTGA	1e-9	-2.215e+01	0.0000	2298.0	12.48%	3357.6	11.01%
DAG2(C2C2dof)/col-DAG2-DAP-Seq(GSE60143)/Homer	WWTTHACTTTTT	1e-9	-2.148e+01	0.0000	2532.0	13.75%	3732.2	12.24%
AT2G33550(Trihelix)/colamp-AT2G33550-DAP-Seq(GSE60143)/Homer	TTTAAGGGCAYTTTT	1e-9	-2.137e+01	0.0000	3227.0	17.52%	4833.7	15.85%
dof24(C2C2dof)/col-dof24-DAP-Seq(GSE60143)/Homer	TWMCTTTTTG	1e-9	-2.089e+01	0.0000	3301.0	17.92%	4958.0	16.26%
OBP4(C2C2dof)/col-OBP4-DAP-Seq(GSE60143)/Homer	WTTHACTTTTTB	1e-8	-2.071e+01	0.0000	2191.0	11.89%	3205.3	10.51%
BBX31(Orphan)/col-BBX31-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e-8	-2.067e+01	0.0000	2460.0	13.36%	3628.4	11.90%
SeqBias: C/A-bias	MMMMMMMMMM	1e-8	-2.067e+01	0.0000	18381.0	99.79%	30339.6	99.51%
AT1G20910(ARID)/col-AT1G20910-DAP-Seq(GSE60143)/Homer	THAATTRAWN	1e-8	-2.063e+01	0.0000	2094.0	11.37%	3054.2	10.02%
bHLH122(bHLH)/col100-bHLH122-DAP-Seq(GSE60143)/Homer	NDDCAASTTGHHNWW	1e-8	-2.058e+01	0.0000	1256.0	6.82%	1757.3	5.76%
AT2G20110(CPP)/colamp-AT2G20110-DAP-Seq(GSE60143)/Homer	ATTYAAATHY	1e-8	-2.052e+01	0.0000	2113.0	11.47%	3085.2	10.12%
ASL18(LOBAS2)/colamp-ASL18-DAP-Seq(GSE60143)/Homer	CCGGAAAWTCMGGAR	1e-8	-2.040e+01	0.0000	2959.0	16.06%	4420.5	14.50%
DREB19(AP2EREBP)/colamp-DREB19-DAP-Seq(GSE60143)/Homer	AATGTCGGTK	1e-8	-1.973e+01	0.0000	709.0	3.85%	938.9	3.08%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-8	-1.970e+01	0.0000	1276.0	6.93%	1795.1	5.89%
MYB30(MYB)/colamp-MYB30-DAP-Seq(GSE60143)/Homer	AGGTAGTTGG	1e-8	-1.963e+01	0.0000	1865.0	10.12%	2707.3	8.88%
GT2(Trihelix)/colamp-GT2-DAP-Seq(GSE60143)/Homer	AMGGTAAAWWWN	1e-8	-1.944e+01	0.0000	1518.0	8.24%	2170.5	7.12%
ERF8(AP2EREBP)/colamp-ERF8-DAP-Seq(GSE60143)/Homer	CGCCGYCATW	1e-8	-1.922e+01	0.0000	1884.0	10.23%	2741.3	8.99%
WRKY50(WRKY)/col-WRKY50-DAP-Seq(GSE60143)/Homer	NNTTGACTWNNGNNN	1e-8	-1.921e+01	0.0000	1296.0	7.04%	1830.4	6.00%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e-8	-1.898e+01	0.0000	5485.0	29.78%	8499.4	27.88%
AT5G60130(ABI3VP1)/col-AT5G60130-DAP-Seq(GSE60143)/Homer	WTTYTAAGVAAA	1e-8	-1.893e+01	0.0000	2773.0	15.05%	4144.8	13.59%
At3g45610(C2C2dof)/col-At3g45610-DAP-Seq(GSE60143)/Homer	TWACTTTTTS	1e-8	-1.858e+01	0.0000	2349.0	12.75%	3478.1	11.41%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-8	-1.856e+01	0.0000	197.0	1.07%	212.6	0.70%
MYB55(MYB)/colamp-MYB55-DAP-Seq(GSE60143)/Homer	YACCWAMC	1e-8	-1.856e+01	0.0000	1698.0	9.22%	2458.8	8.06%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-8	-1.855e+01	0.0000	1615.0	8.77%	2329.9	7.64%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-8	-1.846e+01	0.0000	3663.0	19.89%	5569.4	18.27%
AT3G51470(DBP)/col-AT3G51470-DAP-Seq(GSE60143)/Homer	TTWHGGTGCACC	1e-7	-1.840e+01	0.0000	2314.0	12.56%	3425.2	11.23%
RAP26(AP2EREBP)/colamp-RAP26-DAP-Seq(GSE60143)/Homer	HDATGGCGGCGG	1e-7	-1.828e+01	0.0000	2125.0	11.54%	3129.3	10.26%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-7	-1.795e+01	0.0000	3068.0	16.66%	4627.0	15.18%
ERF104(AP2EREBP)/col-ERF104-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e-7	-1.794e+01	0.0000	2339.0	12.70%	3470.1	11.38%
At1g22810(AP2EREBP)/colamp-At1g22810-DAP-Seq(GSE60143)/Homer	BCACCGACANNN	1e-7	-1.779e+01	0.0000	550.0	2.99%	715.3	2.35%
ERF4(AP2EREBP)/colamp-ERF4-DAP-Seq(GSE60143)/Homer	WDWTGGCGGCGG	1e-7	-1.752e+01	0.0000	1876.0	10.18%	2747.3	9.01%
SeqBias: GA-repeat	GAGAGAGAGA	1e-7	-1.751e+01	0.0000	11705.0	63.55%	18779.8	61.60%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-7	-1.749e+01	0.0000	1282.0	6.96%	1824.4	5.98%
AT5G66940(C2C2dof)/col-AT5G66940-DAP-Seq(GSE60143)/Homer	NNHACTTTWT	1e-7	-1.748e+01	0.0000	3146.0	17.08%	4757.1	15.60%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-7	-1.743e+01	0.0000	1897.0	10.30%	2781.1	9.12%
ATY13(MYB)/col-ATY13-DAP-Seq(GSE60143)/Homer	YYYAACYRHH	1e-7	-1.742e+01	0.0000	5390.0	29.26%	8372.6	27.46%
AT1G76880(Trihelix)/col-AT1G76880-DAP-Seq(GSE60143)/Homer	ACGGTAAAAW	1e-7	-1.722e+01	0.0000	498.0	2.70%	642.9	2.11%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-7	-1.712e+01	0.0000	499.0	2.71%	644.1	2.11%
AT1G12630(AP2EREBP)/colamp-AT1G12630-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e-7	-1.691e+01	0.0000	635.0	3.45%	846.4	2.78%
WIP5(C2H2)/colamp-WIP5-DAP-Seq(GSE60143)/Homer	TDTTCTCMAGGT	1e-7	-1.672e+01	0.0000	2091.0	11.35%	3094.9	10.15%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-7	-1.643e+01	0.0000	959.0	5.21%	1338.5	4.39%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-6	-1.609e+01	0.0000	1186.0	6.44%	1689.7	5.54%
MYB88(MYB)/col-MYB88-DAP-Seq(GSE60143)/Homer	HNACGCTCCT	1e-6	-1.604e+01	0.0000	4240.0	23.02%	6535.1	21.43%
At1g77640(AP2EREBP)/col-At1g77640-DAP-Seq(GSE60143)/Homer	TGTCGGTGGA	1e-6	-1.593e+01	0.0000	285.0	1.55%	342.7	1.12%
STZ(C2H2)/colamp-STZ-DAP-Seq(GSE60143)/Homer	HNBTCACT	1e-6	-1.568e+01	0.0000	9400.0	51.03%	14983.4	49.14%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-6	-1.564e+01	0.0000	571.0	3.10%	759.4	2.49%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-6	-1.561e+01	0.0000	1196.0	6.49%	1709.4	5.61%
WRKY20(WRKY)/col-WRKY20-DAP-Seq(GSE60143)/Homer	CKTTGACYWD	1e-6	-1.560e+01	0.0000	881.0	4.78%	1226.9	4.02%
WRKY28(WRKY)/col-WRKY28-DAP-Seq(GSE60143)/Homer	BGTTGACTWH	1e-6	-1.559e+01	0.0000	1511.0	8.20%	2198.3	7.21%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-6	-1.549e+01	0.0000	1950.0	10.59%	2887.2	9.47%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-6	-1.521e+01	0.0000	1704.0	9.25%	2504.4	8.21%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-6	-1.509e+01	0.0000	1011.0	5.49%	1429.9	4.69%
Adof1(C2C2dof)/col-Adof1-DAP-Seq(GSE60143)/Homer	NRWAAAGYDV	1e-6	-1.501e+01	0.0000	4331.0	23.51%	6700.9	21.98%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-6	-1.497e+01	0.0000	806.0	4.38%	1117.9	3.67%
MYB41(MYB)/col-MYB41-DAP-Seq(GSE60143)/Homer	BYTYACCTAA	1e-6	-1.489e+01	0.0000	638.0	3.46%	864.6	2.84%
WRKY18(WRKY)/col-WRKY18-DAP-Seq(GSE60143)/Homer	NNNTTGACYWNNNNN	1e-6	-1.482e+01	0.0000	2086.0	11.32%	3110.5	10.20%
AT2G38300(G2like)/col-AT2G38300-DAP-Seq(GSE60143)/Homer	ADRGAATGTT	1e-6	-1.477e+01	0.0000	2040.0	11.07%	3038.3	9.97%
RAP211(AP2EREBP)/colamp-RAP211-DAP-Seq(GSE60143)/Homer	RGCCGGCYWW	1e-6	-1.476e+01	0.0000	4515.0	24.51%	7002.6	22.97%
AT2G40260(G2like)/colamp-AT2G40260-DAP-Seq(GSE60143)/Homer	WAAAYATTCTTT	1e-6	-1.475e+01	0.0000	2374.0	12.89%	3567.5	11.70%
SPL15(SBP)/colamp-SPL15-DAP-Seq(GSE60143)/Homer	WDWMMGTACADW	1e-6	-1.455e+01	0.0000	1664.0	9.03%	2450.0	8.04%
NAP(NAC)/col-NAP-DAP-Seq(GSE60143)/Homer	ARGTTACGTRTN	1e-6	-1.448e+01	0.0000	1023.0	5.55%	1453.1	4.77%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-6	-1.434e+01	0.0000	352.0	1.91%	445.2	1.46%
MYB67(MYB)/col-MYB67-DAP-Seq(GSE60143)/Homer	YYYACCTAAC	1e-6	-1.432e+01	0.0000	1488.0	8.08%	2176.0	7.14%
bHLH130(bHLH)/col-bHLH130-DAP-Seq(GSE60143)/Homer	GCAACTTG	1e-6	-1.413e+01	0.0000	1089.0	5.91%	1558.5	5.11%
AT5G02460(C2C2dof)/col-AT5G02460-DAP-Seq(GSE60143)/Homer	CHCCTTTT	1e-6	-1.413e+01	0.0000	3467.0	18.82%	5323.4	17.46%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-6	-1.413e+01	0.0000	2749.0	14.92%	4173.8	13.69%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-6	-1.409e+01	0.0000	234.0	1.27%	278.0	0.91%
ERF1(AP2EREBP)/colamp-ERF1-DAP-Seq(GSE60143)/Homer	GGCGGCTR	1e-6	-1.402e+01	0.0000	1489.0	8.08%	2181.1	7.15%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-6	-1.401e+01	0.0000	2667.0	14.48%	4044.1	13.26%
MYB65(MYB)/colamp-MYB65-DAP-Seq(GSE60143)/Homer	RACNGTTA	1e-6	-1.400e+01	0.0000	1591.0	8.64%	2341.5	7.68%
dof43(C2C2dof)/colamp-dof43-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e-6	-1.393e+01	0.0000	2230.0	12.11%	3350.2	10.99%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-6	-1.393e+01	0.0000	4574.0	24.83%	7113.3	23.33%
MYB81(MYB)/col-MYB81-DAP-Seq(GSE60143)/Homer	NWAACSGWTWNN	1e-5	-1.372e+01	0.0000	1999.0	10.85%	2987.4	9.80%
AT3G25990(Trihelix)/colamp-AT3G25990-DAP-Seq(GSE60143)/Homer	TTAACCATAG	1e-5	-1.371e+01	0.0000	928.0	5.04%	1314.6	4.31%
TGA10(bZIP)/colamp-TGA10-DAP-Seq(GSE60143)/Homer	ATGACGTC	1e-5	-1.370e+01	0.0000	682.0	3.70%	939.8	3.08%
AT4G26030(C2H2)/col-AT4G26030-DAP-Seq(GSE60143)/Homer	BYYACCWACY	1e-5	-1.358e+01	0.0000	1540.0	8.36%	2266.3	7.43%
bHLH80(bHLH)/col-bHLH80-DAP-Seq(GSE60143)/Homer	NNNNDCAASTTGHNN	1e-5	-1.345e+01	0.0000	1481.0	8.04%	2175.3	7.13%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-5	-1.337e+01	0.0000	1808.0	9.82%	2690.4	8.82%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-5	-1.336e+01	0.0000	2049.0	11.12%	3071.2	10.07%
At4g38000(C2C2dof)/col-At4g38000-DAP-Seq(GSE60143)/Homer	WWWTWACTTTTT	1e-5	-1.317e+01	0.0000	1621.0	8.80%	2398.3	7.87%
DREB2(AP2EREBP)/col-DREB2-DAP-Seq(GSE60143)/Homer	TMACCGACATWA	1e-5	-1.311e+01	0.0000	551.0	2.99%	746.6	2.45%
ERF2(AP2EREBP)/colamp-ERF2-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e-5	-1.306e+01	0.0000	1690.0	9.17%	2508.4	8.23%
WRKY15(WRKY)/col-WRKY15-DAP-Seq(GSE60143)/Homer	VGTTGACTWW	1e-5	-1.306e+01	0.0000	1137.0	6.17%	1644.0	5.39%
WRKY75(WRKY)/col-WRKY75-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e-5	-1.305e+01	0.0000	1086.0	5.90%	1564.1	5.13%
MYB77(MYB)/col-MYB77-DAP-Seq(GSE60143)/Homer	NYAACBGYMC	1e-5	-1.304e+01	0.0000	1978.0	10.74%	2963.1	9.72%
ERF73(AP2EREBP)/col-ERF73-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e-5	-1.300e+01	0.0000	1640.0	8.90%	2431.0	7.97%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-5	-1.298e+01	0.0000	884.0	4.80%	1253.8	4.11%
RAP212(AP2EREBP)/col-RAP212-DAP-Seq(GSE60143)/Homer	CGCCGCCATTTT	1e-5	-1.269e+01	0.0000	1329.0	7.21%	1946.5	6.38%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-5	-1.269e+01	0.0000	1186.0	6.44%	1723.5	5.65%
SPL9(SBP)/colamp-SPL9-DAP-Seq(GSE60143)/Homer	BTGTACTT	1e-5	-1.267e+01	0.0000	2859.0	15.52%	4372.1	14.34%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-5	-1.262e+01	0.0000	985.0	5.35%	1412.4	4.63%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-5	-1.248e+01	0.0000	1376.0	7.47%	2022.1	6.63%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-5	-1.235e+01	0.0000	757.0	4.11%	1064.8	3.49%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-5	-1.220e+01	0.0000	482.0	2.62%	649.5	2.13%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e-5	-1.194e+01	0.0000	177.0	0.96%	207.5	0.68%
TRP2(MYBrelated)/colamp-TRP2-DAP-Seq(GSE60143)/Homer	TAAACCCT	1e-5	-1.184e+01	0.0000	265.0	1.44%	332.9	1.09%
AT3G10030(Trihelix)/colamp-AT3G10030-DAP-Seq(GSE60143)/Homer	GCCGTTAA	1e-5	-1.178e+01	0.0000	802.0	4.35%	1138.9	3.74%
WRKY25(WRKY)/colamp-WRKY25-DAP-Seq(GSE60143)/Homer	NNNNHRGTCAAMNNN	1e-5	-1.170e+01	0.0000	1282.0	6.96%	1884.2	6.18%
MYB58(MYB)/colamp-MYB58-DAP-Seq(GSE60143)/Homer	YYYACCWACC	1e-5	-1.164e+01	0.0000	1460.0	7.93%	2164.4	7.10%
LMI1(HB)/colamp-LMI1-DAP-Seq(GSE60143)/Homer	AATTATTG	1e-5	-1.164e+01	0.0000	925.0	5.02%	1329.4	4.36%
AT4G37180(G2like)/col-AT4G37180-DAP-Seq(GSE60143)/Homer	AGAATCTTNN	1e-4	-1.151e+01	0.0000	1820.0	9.88%	2734.6	8.97%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e-4	-1.150e+01	0.0000	3202.0	17.38%	4943.0	16.21%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-4	-1.146e+01	0.0000	1009.0	5.48%	1461.2	4.79%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-4	-1.137e+01	0.0000	1489.0	8.08%	2213.7	7.26%
ERF3(AP2EREBP)/colamp-ERF3-DAP-Seq(GSE60143)/Homer	ATGGCGGCGG	1e-4	-1.134e+01	0.0000	1338.0	7.26%	1976.9	6.48%
At5g08750(C3H)/col-At5g08750-DAP-Seq(GSE60143)/Homer	NWDTTGCGGCTR	1e-4	-1.119e+01	0.0001	628.0	3.41%	877.4	2.88%
WRKY33(WRKY)/col-WRKY33-DAP-Seq(GSE60143)/Homer	CGTTGACYAW	1e-4	-1.115e+01	0.0001	885.0	4.80%	1272.9	4.18%
NAM(NAC)/col-NAM-DAP-Seq(GSE60143)/Homer	RGTTRCGTRW	1e-4	-1.109e+01	0.0001	1392.0	7.56%	2064.4	6.77%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-4	-1.108e+01	0.0001	292.0	1.59%	375.6	1.23%
AT1G71450(AP2EREBP)/col-AT1G71450-DAP-Seq(GSE60143)/Homer	DHDWTGTCGGTG	1e-4	-1.106e+01	0.0001	2383.0	12.94%	3637.7	11.93%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-4	-1.102e+01	0.0001	2417.0	13.12%	3692.7	12.11%
WRKY55(WRKY)/col-WRKY55-DAP-Seq(GSE60143)/Homer	NCGTTGACTT	1e-4	-1.101e+01	0.0001	1364.0	7.40%	2021.7	6.63%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-4	-1.098e+01	0.0001	282.0	1.53%	361.5	1.19%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-4	-1.089e+01	0.0001	281.0	1.53%	360.1	1.18%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-4	-1.087e+01	0.0001	118.0	0.64%	130.9	0.43%
AT1G49560(G2like)/colamp-AT1G49560-DAP-Seq(GSE60143)/Homer	GAWTCTNWDA	1e-4	-1.070e+01	0.0001	2002.0	10.87%	3035.3	9.96%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e-4	-1.027e+01	0.0001	18395.0	99.86%	30403.3	99.72%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-4	-1.015e+01	0.0002	2954.0	16.04%	4569.4	14.99%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-4	-9.954e+00	0.0002	1199.0	6.51%	1775.6	5.82%
ESE3(AP2EREBP)/col-ESE3-DAP-Seq(GSE60143)/Homer	GACGGTGG	1e-4	-9.821e+00	0.0002	2456.0	13.33%	3775.4	12.38%
MYB99(MYB)/colamp-MYB99-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e-4	-9.765e+00	0.0002	1450.0	7.87%	2173.3	7.13%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-4	-9.709e+00	0.0002	172.0	0.93%	209.4	0.69%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-4	-9.682e+00	0.0002	1193.0	6.48%	1769.7	5.80%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-4	-9.569e+00	0.0003	1447.0	7.86%	2171.4	7.12%
ATHB53(HB)/col-ATHB53-DAP-Seq(GSE60143)/Homer	CAATAATT	1e-4	-9.513e+00	0.0003	640.0	3.47%	910.9	2.99%
RRTF1(AP2EREBP)/colamp-RRTF1-DAP-Seq(GSE60143)/Homer	CCGCCGCHATTT	1e-4	-9.512e+00	0.0003	311.0	1.69%	412.5	1.35%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-4	-9.467e+00	0.0003	108.0	0.59%	122.0	0.40%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-4	-9.460e+00	0.0003	1554.0	8.44%	2342.4	7.68%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-4	-9.348e+00	0.0003	400.0	2.17%	546.6	1.79%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-4	-9.272e+00	0.0004	779.0	4.23%	1127.3	3.70%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-4	-9.256e+00	0.0004	4684.0	25.43%	7391.3	24.24%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-4	-9.245e+00	0.0004	1649.0	8.95%	2496.4	8.19%
At1g76110(ARID)/colamp-At1g76110-DAP-Seq(GSE60143)/Homer	ATTTAATG	1e-3	-9.177e+00	0.0004	853.0	4.63%	1243.2	4.08%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e-3	-9.113e+00	0.0004	547.0	2.97%	771.8	2.53%
At1g36060(AP2EREBP)/colamp-At1g36060-DAP-Seq(GSE60143)/Homer	NNWWKGTCGGTG	1e-3	-9.059e+00	0.0004	865.0	4.70%	1263.8	4.15%
AT1G77200(AP2EREBP)/colamp-AT1G77200-DAP-Seq(GSE60143)/Homer	ACCGACAHWD	1e-3	-9.057e+00	0.0004	890.0	4.83%	1302.7	4.27%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-3	-8.971e+00	0.0005	1446.0	7.85%	2178.6	7.15%
PUCHI(AP2EREBP)/colamp-PUCHI-DAP-Seq(GSE60143)/Homer	GCGCCGTY	1e-3	-8.965e+00	0.0005	1521.0	8.26%	2297.8	7.54%
WRKY6(WRKY)/colamp-WRKY6-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWD	1e-3	-8.957e+00	0.0005	952.0	5.17%	1400.4	4.59%
CELF2(RRM)/JSL1-CELF2-CLIP-Seq(GSE71264)/Homer	RGTGTCAG	1e-3	-8.914e+00	0.0005	570.0	3.09%	808.4	2.65%
AT2G31460(REMB3)/col-AT2G31460-DAP-Seq(GSE60143)/Homer	WNWARWDGAAATGAT	1e-3	-8.830e+00	0.0005	495.0	2.69%	694.1	2.28%
AtHB32(ZFHD)/col200-AtHB32-DAP-Seq(GSE60143)/Homer	CGAATTAT	1e-3	-8.820e+00	0.0005	1570.0	8.52%	2377.6	7.80%
WRKY27(WRKY)/colamp-WRKY27-DAP-Seq(GSE60143)/Homer	NHGTTGACYTWD	1e-3	-8.769e+00	0.0006	1001.0	5.43%	1479.4	4.85%
SeqBias: G/A bias	RRRRRRRRRR	1e-3	-8.694e+00	0.0006	18402.0	99.90%	30424.8	99.79%
DREB26(AP2EREBP)/col-DREB26-DAP-Seq(GSE60143)/Homer	CCACCGACAH	1e-3	-8.498e+00	0.0007	366.0	1.99%	502.0	1.65%
ANAC045(NAC)/col-ANAC045-DAP-Seq(GSE60143)/Homer	DNCKTVNNNNNNAMG	1e-3	-8.340e+00	0.0008	3106.0	16.86%	4851.3	15.91%
HSF3(HSF)/colamp-HSF3-DAP-Seq(GSE60143)/Homer	NTTCTAGAAKCTTCT	1e-3	-8.325e+00	0.0009	1450.0	7.87%	2194.5	7.20%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-3	-8.324e+00	0.0009	1035.0	5.62%	1538.8	5.05%
MYB17(MYB)/colamp-MYB17-DAP-Seq(GSE60143)/Homer	GGTAGGTGRG	1e-3	-8.303e+00	0.0009	982.0	5.33%	1455.7	4.77%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e-3	-8.300e+00	0.0009	1994.0	10.83%	3062.2	10.04%
SPL11(SBP)/col100-SPL11-DAP-Seq(GSE60143)/Homer	YTGTACTTBH	1e-3	-8.260e+00	0.0009	745.0	4.04%	1085.7	3.56%
AT2G15740(C2H2)/col-AT2G15740-DAP-Seq(GSE60143)/Homer	DHNDWATCGATD	1e-3	-8.051e+00	0.0011	807.0	4.38%	1184.6	3.89%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e-3	-8.034e+00	0.0011	145.0	0.79%	178.8	0.59%
MYB61(MYB)/colamp-MYB61-DAP-Seq(GSE60143)/Homer	HCYACCTACC	1e-3	-8.002e+00	0.0011	2319.0	12.59%	3589.4	11.77%
MYB3R1(MYB)/col-MYB3R1-DAP-Seq(GSE60143)/Homer	WWDTDACCGTTR	1e-3	-7.988e+00	0.0012	303.0	1.64%	410.9	1.35%
MYB107(MYB)/col-MYB107-DAP-Seq(GSE60143)/Homer	RGTWGGTRRR	1e-3	-7.975e+00	0.0012	2520.0	13.68%	3913.2	12.84%
AtGRF6(GRF)/col-AtGRF6-DAP-Seq(GSE60143)/Homer	NTGTCAGADNNNNNN	1e-3	-7.952e+00	0.0012	1802.0	9.78%	2761.1	9.06%
WRKY29(WRKY)/colamp-WRKY29-DAP-Seq(GSE60143)/Homer	MGTTGACTTT	1e-3	-7.740e+00	0.0015	1153.0	6.26%	1732.1	5.68%
NST1(NAC)/colamp-NST1-DAP-Seq(GSE60143)/Homer	WRCTTRWWNWWYAAG	1e-3	-7.707e+00	0.0015	1033.0	5.61%	1543.5	5.06%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-3	-7.635e+00	0.0016	3192.0	17.33%	5006.2	16.42%
SPL1(SBP)/colamp-SPL1-DAP-Seq(GSE60143)/Homer	HYGTACDTWH	1e-3	-7.634e+00	0.0016	2116.0	11.49%	3270.7	10.73%
WRKY24(WRKY)/colamp-WRKY24-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e-3	-7.611e+00	0.0016	949.0	5.15%	1412.9	4.63%
GRF9(GRF)/colamp-GRF9-DAP-Seq(GSE60143)/Homer	NWCTGACANNNNNNN	1e-3	-7.609e+00	0.0016	1370.0	7.44%	2078.7	6.82%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e-3	-7.582e+00	0.0017	1726.0	9.37%	2646.2	8.68%
DEL1(E2FDP)/colamp-DEL1-DAP-Seq(GSE60143)/Homer	TTCCCGCCAA	1e-3	-7.441e+00	0.0019	8.0	0.04%	3.3	0.01%
ANAC042(NAC)/col-ANAC042-DAP-Seq(GSE60143)/Homer	CGTNDHNDHNACGKY	1e-3	-7.423e+00	0.0020	976.0	5.30%	1457.5	4.78%
TSO1(CPP)/col-TSO1-DAP-Seq(GSE60143)/Homer	RAATTTRAAW	1e-3	-7.399e+00	0.0020	211.0	1.15%	277.2	0.91%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e-3	-7.385e+00	0.0020	3313.0	17.99%	5208.6	17.08%
WRKY31(WRKY)/colamp-WRKY31-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWK	1e-3	-7.320e+00	0.0022	758.0	4.12%	1116.1	3.66%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-3	-7.287e+00	0.0022	1116.0	6.06%	1680.6	5.51%
SRS7(SRS)/colamp-SRS7-DAP-Seq(GSE60143)/Homer	HATAGGTTTH	1e-3	-7.186e+00	0.0024	5304.0	28.79%	8458.8	27.74%
AT1G76870(Trihelix)/col-AT1G76870-DAP-Seq(GSE60143)/Homer	AAAACCRGWW	1e-3	-7.162e+00	0.0025	561.0	3.05%	811.8	2.66%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-3	-7.137e+00	0.0025	1320.0	7.17%	2006.6	6.58%
MYB93(MYB)/colamp-MYB93-DAP-Seq(GSE60143)/Homer	GGTAGGTGRD	1e-3	-7.034e+00	0.0028	1791.0	9.72%	2760.2	9.05%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-3	-7.022e+00	0.0028	88.0	0.48%	103.0	0.34%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e-3	-7.005e+00	0.0029	746.0	4.05%	1101.0	3.61%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-3	-6.976e+00	0.0030	351.0	1.91%	490.2	1.61%
TGA9(bZIP)/colamp-TGA9-DAP-Seq(GSE60143)/Homer	VTGACGTC	1e-3	-6.957e+00	0.0030	1423.0	7.73%	2173.9	7.13%
CEJ1(AP2EREBP)/col-CEJ1-DAP-Seq(GSE60143)/Homer	WWTGTCGGTG	1e-3	-6.939e+00	0.0030	1235.0	6.70%	1874.6	6.15%
ATHB13(Homeobox)/col-ATHB13-DAP-Seq(GSE60143)/Homer	CAATAATT	1e-3	-6.922e+00	0.0031	1422.0	7.72%	2172.1	7.12%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-2	-6.871e+00	0.0032	334.0	1.81%	465.3	1.53%
CBF1(AP2EREBP)/colamp-CBF1-DAP-Seq(GSE60143)/Homer	YRCCGACATN	1e-2	-6.843e+00	0.0033	790.0	4.29%	1172.6	3.85%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-2	-6.800e+00	0.0034	2432.0	13.20%	3796.7	12.45%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-2	-6.797e+00	0.0034	459.0	2.49%	657.0	2.16%
M1BP(Zf)/S2R+-M1BP-ChIP-Seq(GSE49842)/Homer	CAGTGTGACCGT	1e-2	-6.670e+00	0.0039	401.0	2.18%	569.1	1.87%
MYB33(MYB)/col-MYB33-DAP-Seq(GSE60143)/Homer	DDTYNGTTAN	1e-2	-6.643e+00	0.0040	2493.0	13.53%	3898.6	12.79%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-2	-6.614e+00	0.0041	2409.0	13.08%	3763.3	12.34%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e-2	-6.505e+00	0.0046	505.0	2.74%	731.5	2.40%
TCP3(TCP)/colamp-TCP3-DAP-Seq(GSE60143)/Homer	WGTGGTCCCAAHWWW	1e-2	-6.471e+00	0.0047	508.0	2.76%	737.0	2.42%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-2	-6.451e+00	0.0048	1154.0	6.26%	1753.4	5.75%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-2	-6.299e+00	0.0055	193.0	1.05%	257.0	0.84%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e-2	-6.277e+00	0.0056	435.0	2.36%	625.6	2.05%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-2	-6.264e+00	0.0057	728.0	3.95%	1082.2	3.55%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-2	-6.234e+00	0.0059	930.0	5.05%	1401.0	4.60%
SMB(NAC)/colamp-SMB-DAP-Seq(GSE60143)/Homer	CTTVNNNNDBAAGHW	1e-2	-6.214e+00	0.0060	1156.0	6.28%	1760.2	5.77%
LBD13(LOBAS2)/colamp-LBD13-DAP-Seq(GSE60143)/Homer	KCCGTNWTTTBCGGC	1e-2	-6.192e+00	0.0061	1389.0	7.54%	2132.6	6.99%
TGA2(bZIP)/colamp-TGA2-DAP-Seq(GSE60143)/Homer	ACGTCAYCHH	1e-2	-6.124e+00	0.0065	667.0	3.62%	988.1	3.24%
ATHB5(HB)/colamp-ATHB5-DAP-Seq(GSE60143)/Homer	AATGATTG	1e-2	-6.113e+00	0.0065	1138.0	6.18%	1733.6	5.69%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e-2	-6.099e+00	0.0066	106.0	0.58%	131.5	0.43%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e-2	-6.052e+00	0.0069	6370.0	34.58%	10242.5	33.59%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-2	-6.029e+00	0.0070	1484.0	8.06%	2287.5	7.50%
NLP7(RWPRK)/col-NLP7-DAP-Seq(GSE60143)/Homer	TGRCCYTTCR	1e-2	-6.021e+00	0.0071	3473.0	18.85%	5503.8	18.05%
TGA3(bZIP)/colamp-TGA3-DAP-Seq(GSE60143)/Homer	WTGATGACGTCATCW	1e-2	-6.014e+00	0.0071	57.0	0.31%	63.7	0.21%
At2g41835(C2H2)/col-At2g41835-DAP-Seq(GSE60143)/Homer	TTTGAAAA	1e-2	-5.960e+00	0.0075	775.0	4.21%	1160.2	3.81%
ANAC011(NAC)/col-ANAC011-DAP-Seq(GSE60143)/Homer	TDCTTGYRNNDCAAG	1e-2	-5.919e+00	0.0077	454.0	2.46%	658.5	2.16%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e-2	-5.905e+00	0.0078	2512.0	13.64%	3946.7	12.94%
AT3G60490(AP2EREBP)/colamp-AT3G60490-DAP-Seq(GSE60143)/Homer	NNRCCGACANNNNNN	1e-2	-5.853e+00	0.0082	299.0	1.62%	420.1	1.38%
AT5G45580(G2like)/colamp-AT5G45580-DAP-Seq(GSE60143)/Homer	ADRGAATCTH	1e-2	-5.852e+00	0.0082	2374.0	12.89%	3724.2	12.22%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-2	-5.811e+00	0.0085	351.0	1.91%	500.7	1.64%
ANAC047(NAC)/colamp-ANAC047-DAP-Seq(GSE60143)/Homer	WACACGTAACTT	1e-2	-5.762e+00	0.0089	772.0	4.19%	1158.9	3.80%
At4g16750(AP2EREBP)/col-At4g16750-DAP-Seq(GSE60143)/Homer	HACCGACAHA	1e-2	-5.760e+00	0.0089	834.0	4.53%	1256.9	4.12%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-2	-5.740e+00	0.0091	1109.0	6.02%	1693.8	5.56%
AT1G44830(AP2EREBP)/col-AT1G44830-DAP-Seq(GSE60143)/Homer	NCCACCGACA	1e-2	-5.735e+00	0.0091	474.0	2.57%	691.9	2.27%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-2	-5.683e+00	0.0095	1240.0	6.73%	1904.0	6.24%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-2	-5.678e+00	0.0096	258.0	1.40%	359.3	1.18%
At3g12730(G2like)/colamp-At3g12730-DAP-Seq(GSE60143)/Homer	AAGATTCT	1e-2	-5.662e+00	0.0097	2151.0	11.68%	3368.2	11.05%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e-2	-5.653e+00	0.0097	352.0	1.91%	503.8	1.65%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-2	-5.631e+00	0.0099	3605.0	19.57%	5729.9	18.79%
AT4G18450(AP2EREBP)/col-AT4G18450-DAP-Seq(GSE60143)/Homer	ATGGCGGCKG	1e-2	-5.610e+00	0.0101	914.0	4.96%	1385.7	4.54%
ANAC087(NAC)/col-ANAC087-DAP-Seq(GSE60143)/Homer	WVCKTGHNNNWCAMG	1e-2	-5.536e+00	0.0109	337.0	1.83%	481.4	1.58%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-2	-5.305e+00	0.0136	831.0	4.51%	1258.2	4.13%
ANAC103(NAC)/col-ANAC103-DAP-Seq(GSE60143)/Homer	AACTTGNWNWNCAAG	1e-2	-5.289e+00	0.0138	483.0	2.62%	710.9	2.33%
ATHB6(Homeobox)/col-ATHB6-DAP-Seq(GSE60143)/Homer	AATGATTG	1e-2	-5.229e+00	0.0146	1529.0	8.30%	2375.8	7.79%
At1g25550(G2like)/colamp-At1g25550-DAP-Seq(GSE60143)/Homer	NAGATTCY	1e-2	-5.184e+00	0.0153	1644.0	8.93%	2561.3	8.40%
LOB(LOBAS2)/col-LOB-DAP-Seq(GSE60143)/Homer	CGCCGKAWWTTHCGS	1e-2	-5.075e+00	0.0170	371.0	2.01%	538.9	1.77%
AT3G09735(S1Falike)/col-AT3G09735-DAP-Seq(GSE60143)/Homer	TTCTAGAANMTTCTA	1e-2	-5.043e+00	0.0175	651.0	3.53%	977.6	3.21%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-2	-5.033e+00	0.0176	1298.0	7.05%	2008.1	6.59%
STOP1(C2H2)/colamp-STOP1-DAP-Seq(GSE60143)/Homer	DTATCTGGKGRAGGT	1e-2	-5.024e+00	0.0177	728.0	3.95%	1099.8	3.61%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-2	-5.012e+00	0.0178	276.0	1.50%	392.2	1.29%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e-2	-4.972e+00	0.0185	1028.0	5.58%	1577.4	5.17%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e-2	-4.914e+00	0.0196	21.0	0.11%	19.3	0.06%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-2	-4.910e+00	0.0196	582.0	3.16%	870.2	2.85%
GATA4(C2C2gata)/col-GATA4-DAP-Seq(GSE60143)/Homer	DDWTYAGATCTR	1e-2	-4.889e+00	0.0199	886.0	4.81%	1352.4	4.44%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-2	-4.804e+00	0.0216	494.0	2.68%	733.7	2.41%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e-2	-4.804e+00	0.0216	1143.0	6.21%	1764.0	5.79%
MYB3R4(MYB)/col-MYB3R4-DAP-Seq(GSE60143)/Homer	AWWTAACCGTTR	1e-2	-4.789e+00	0.0219	169.0	0.92%	231.1	0.76%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e-2	-4.758e+00	0.0225	791.0	4.29%	1203.2	3.95%
dof42(C2C2dof)/col-dof42-DAP-Seq(GSE60143)/Homer	AAAAAGGC	1e-2	-4.752e+00	0.0226	998.0	5.42%	1534.0	5.03%
MYB92(MYB)/colamp-MYB92-DAP-Seq(GSE60143)/Homer	GGTAGGTR	1e-2	-4.727e+00	0.0231	1647.0	8.94%	2576.4	8.45%
ANAC070(NAC)/colamp-ANAC070-DAP-Seq(GSE60143)/Homer	CTTRHDNHNBAAGHW	1e-2	-4.709e+00	0.0234	1391.0	7.55%	2164.5	7.10%
ATY19(MYB)/col-ATY19-DAP-Seq(GSE60143)/Homer	YYCACCWACCAT	1e-1	-4.602e+00	0.0260	1115.0	6.05%	1723.2	5.65%
MYB40(MYB)/col-MYB40-DAP-Seq(GSE60143)/Homer	TGGTAGGTRARA	1e-1	-4.569e+00	0.0268	515.0	2.80%	769.1	2.52%
AGL63(MADS)/col-AGL63-DAP-Seq(GSE60143)/Homer	TTCCAAWWWTGG	1e-1	-4.535e+00	0.0276	1189.0	6.45%	1843.4	6.05%
AGL6(MADS)/col-AGL6-DAP-Seq(GSE60143)/Homer	TTWCCWWAWWDGGWA	1e-1	-4.505e+00	0.0284	169.0	0.92%	233.8	0.77%
ARF2(ARF)/col-ARF2-DAP-Seq(GSE60143)/Homer	TTGTCGGMWN	1e-1	-4.479e+00	0.0291	4172.0	22.65%	6692.9	21.95%
ATHB40(HB)/col-ATHB40-DAP-Seq(GSE60143)/Homer	HCAATWATTG	1e-1	-4.477e+00	0.0291	1003.0	5.45%	1546.4	5.07%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-1	-4.405e+00	0.0311	223.0	1.21%	316.1	1.04%
REM19(REM)/colamp-REM19-DAP-Seq(GSE60143)/Homer	AAAAAAAA	1e-1	-4.393e+00	0.0314	374.0	2.03%	550.5	1.81%
TINY(AP2EREBP)/col-TINY-DAP-Seq(GSE60143)/Homer	NNCACCGACA	1e-1	-4.380e+00	0.0317	280.0	1.52%	404.1	1.33%
bHLH10(bHLH)/colamp-bHLH10-DAP-Seq(GSE60143)/Homer	YACCGACA	1e-1	-4.353e+00	0.0325	305.0	1.66%	443.4	1.45%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e-1	-4.321e+00	0.0335	87.0	0.47%	112.8	0.37%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-1	-4.295e+00	0.0343	1176.0	6.38%	1827.4	5.99%
SVP(MADS)/col-SVP-DAP-Seq(GSE60143)/Homer	ANTTWCCHAATTTGG	1e-1	-4.267e+00	0.0351	742.0	4.03%	1133.3	3.72%
At4g31060(AP2EREBP)/colamp-At4g31060-DAP-Seq(GSE60143)/Homer	CACCGACAAW	1e-1	-4.262e+00	0.0352	419.0	2.27%	622.4	2.04%
WRKY22(WRKY)/colamp-WRKY22-DAP-Seq(GSE60143)/Homer	WWAAAGTCAACK	1e-1	-4.255e+00	0.0354	628.0	3.41%	952.9	3.13%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e-1	-4.237e+00	0.0359	1446.0	7.85%	2263.4	7.42%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-1	-4.225e+00	0.0363	2840.0	15.42%	4525.3	14.84%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-1	-4.218e+00	0.0364	945.0	5.13%	1458.7	4.78%
ANAC071(NAC)/col-ANAC071-DAP-Seq(GSE60143)/Homer	DNCKTNDNNNHNAAG	1e-1	-4.206e+00	0.0368	1021.0	5.54%	1580.3	5.18%
WUS1(Homeobox)/colamp-WUS1-DAP-Seq(GSE60143)/Homer	CAWTCATTCA	1e-1	-4.200e+00	0.0369	503.0	2.73%	755.8	2.48%
ANAC004(NAC)/colamp-ANAC004-DAP-Seq(GSE60143)/Homer	WNCTTVYNNNRBAAG	1e-1	-4.194e+00	0.0370	456.0	2.48%	681.3	2.23%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-1	-4.189e+00	0.0371	1174.0	6.37%	1826.9	5.99%
VND1(NAC)/col-VND1-DAP-Seq(GSE60143)/Homer	CTTRWDNHWYAAGYW	1e-1	-4.186e+00	0.0371	934.0	5.07%	1441.2	4.73%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-1	-4.162e+00	0.0379	646.0	3.51%	982.2	3.22%
CUC3(NAC)/col-CUC3-DAP-Seq(GSE60143)/Homer	TRCKTGWNNNACAMG	1e-1	-4.152e+00	0.0382	362.0	1.97%	534.2	1.75%
At1g13300(G2like)/col-At1g13300-DAP-Seq(GSE60143)/Homer	GAATCTWAGATTCYN	1e-1	-4.140e+00	0.0385	19.0	0.10%	18.3	0.06%
AT2G28920(ND)/col-AT2G28920-DAP-Seq(GSE60143)/Homer	WAGATATTTWTW	1e-1	-4.125e+00	0.0390	333.0	1.81%	489.9	1.61%
GATA12(C2C2gata)/col-GATA12-DAP-Seq(GSE60143)/Homer	YAGATCTRAW	1e-1	-4.122e+00	0.0390	689.0	3.74%	1051.9	3.45%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-1	-4.110e+00	0.0394	920.0	4.99%	1420.2	4.66%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e-1	-4.097e+00	0.0398	336.0	1.82%	494.6	1.62%
bHLH157(bHLH)/col-bHLH157-DAP-Seq(GSE60143)/Homer	KACACGTCTCTY	1e-1	-4.087e+00	0.0401	262.0	1.42%	379.0	1.24%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e-1	-4.083e+00	0.0402	804.0	4.36%	1235.3	4.05%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-1	-4.077e+00	0.0403	889.0	4.83%	1371.5	4.50%
ARF16(ARF)/col-ARF16-DAP-Seq(GSE60143)/Homer	ATTTTACGAT	1e-1	-4.060e+00	0.0409	151.0	0.82%	209.5	0.69%
MYB105(MYB)/colamp-MYB105-DAP-Seq(GSE60143)/Homer	RATWCCGTTA	1e-1	-4.059e+00	0.0409	758.0	4.12%	1162.5	3.81%
SeqBias: CG-repeat	CGCGCGCGCG	1e-1	-4.021e+00	0.0423	3887.0	21.10%	6242.5	20.47%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-1	-3.998e+00	0.0432	1123.0	6.10%	1748.3	5.73%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-1	-3.991e+00	0.0434	823.0	4.47%	1267.6	4.16%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e-1	-3.983e+00	0.0436	2301.0	12.49%	3655.6	11.99%
ANAC013(NAC)/col-ANAC013-DAP-Seq(GSE60143)/Homer	CTTGNNNNNCAAGNA	1e-1	-3.959e+00	0.0445	547.0	2.97%	828.8	2.72%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-1	-3.938e+00	0.0454	798.0	4.33%	1228.9	4.03%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-1	-3.925e+00	0.0459	541.0	2.94%	819.2	2.69%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-1	-3.919e+00	0.0460	149.0	0.81%	207.9	0.68%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-1	-3.912e+00	0.0462	427.0	2.32%	639.3	2.10%
CBF3(AP2EREBP)/colamp-CBF3-DAP-Seq(GSE60143)/Homer	YNRCCGACATNN	1e-1	-3.906e+00	0.0464	520.0	2.82%	786.7	2.58%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-1	-3.904e+00	0.0464	224.0	1.22%	322.3	1.06%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-1	-3.897e+00	0.0466	2057.0	11.17%	3261.7	10.70%
At1g19210(AP2EREBP)/colamp-At1g19210-DAP-Seq(GSE60143)/Homer	HCACCGACCAHN	1e-1	-3.734e+00	0.0547	1817.0	9.86%	2876.4	9.43%
ANAC083(NAC)/col-ANAC083-DAP-Seq(GSE60143)/Homer	CKTRWNNNWYAMGTA	1e-1	-3.719e+00	0.0553	808.0	4.39%	1248.0	4.09%
CRC(C2C2YABBY)/col-CRC-DAP-Seq(GSE60143)/Homer	TWATSATA	1e-1	-3.697e+00	0.0565	1365.0	7.41%	2145.8	7.04%
EMB1789(C3H)/col-EMB1789-DAP-Seq(GSE60143)/Homer	TWTTTACCGYND	1e-1	-3.696e+00	0.0565	513.0	2.79%	778.6	2.55%
VND6(NAC)/col-VND6-DAP-Seq(GSE60143)/Homer	DCTTNHTTTTYAMGY	1e-1	-3.670e+00	0.0577	1398.0	7.59%	2199.4	7.21%
EPR1(MYBrelated)/colamp-EPR1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e-1	-3.646e+00	0.0588	457.0	2.48%	690.4	2.26%
LHY1(MYBrelated)/col-LHY1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e-1	-3.646e+00	0.0588	457.0	2.48%	690.4	2.26%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-1	-3.622e+00	0.0601	1993.0	10.82%	3165.2	10.38%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-1	-3.600e+00	0.0613	473.0	2.57%	716.2	2.35%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-1	-3.595e+00	0.0615	3408.0	18.50%	5474.9	17.96%
AT3G16280(AP2EREBP)/colamp-AT3G16280-DAP-Seq(GSE60143)/Homer	HCACCGACAHHDHHN	1e-1	-3.583e+00	0.0620	329.0	1.79%	489.3	1.60%
MYB98(MYB)/col-MYB98-DAP-Seq(GSE60143)/Homer	NWDCCGTTAC	1e-1	-3.571e+00	0.0627	334.0	1.81%	497.5	1.63%
NTM2(NAC)/col-NTM2-DAP-Seq(GSE60143)/Homer	CTTRTNNNAYAAGBH	1e-1	-3.556e+00	0.0635	693.0	3.76%	1067.6	3.50%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-1	-3.483e+00	0.0681	67.0	0.36%	87.1	0.29%
HSFA6B(HSF)/colamp-HSFA6B-DAP-Seq(GSE60143)/Homer	NTTCTAGAANHTTCT	1e-1	-3.483e+00	0.0681	774.0	4.20%	1198.3	3.93%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e-1	-3.466e+00	0.0689	200.0	1.09%	289.8	0.95%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-1	-3.449e+00	0.0699	32.0	0.17%	37.7	0.12%
SND3(NAC)/col-SND3-DAP-Seq(GSE60143)/Homer	CTTNHNNNDNAAGNH	1e-1	-3.415e+00	0.0722	866.0	4.70%	1347.2	4.42%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e-1	-3.376e+00	0.0748	122.0	0.66%	170.6	0.56%
At3g24120(G2like)/col-At3g24120-DAP-Seq(GSE60143)/Homer	NWWAGMATMW	1e-1	-3.359e+00	0.0759	5232.0	28.40%	8476.6	27.80%
WRKY42(WRKY)/colamp-WRKY42-DAP-Seq(GSE60143)/Homer	NAAAGTCAACGN	1e-1	-3.354e+00	0.0761	364.0	1.98%	547.2	1.79%
ANAC005(NAC)/col-ANAC005-DAP-Seq(GSE60143)/Homer	WVCTTVTWNHABAAG	1e-1	-3.324e+00	0.0783	641.0	3.48%	988.6	3.24%
HSF6(HSF)/col-HSF6-DAP-Seq(GSE60143)/Homer	TTYTAGAAGCTTCTA	1e-1	-3.297e+00	0.0802	335.0	1.82%	502.9	1.65%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-1	-3.275e+00	0.0818	1007.0	5.47%	1577.7	5.17%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-1	-3.272e+00	0.0819	369.0	2.00%	556.5	1.83%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-1	-3.272e+00	0.0819	160.0	0.87%	229.7	0.75%
AGL15(MADS)/col-AGL15-DAP-Seq(GSE60143)/Homer	TTTCCHWATWDGGAA	1e-1	-3.258e+00	0.0827	209.0	1.13%	305.0	1.00%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-1	-3.196e+00	0.0877	331.0	1.80%	497.7	1.63%
bZIP52(bZIP)/colamp-bZIP52-DAP-Seq(GSE60143)/Homer	NDNHCAGCTGTCANN	1e-1	-3.145e+00	0.0921	2081.0	11.30%	3323.5	10.90%
ANAC046(NAC)/colamp-ANAC046-DAP-Seq(GSE60143)/Homer	ACACGYWAYC	1e-1	-3.056e+00	0.1005	2420.0	13.14%	3879.7	12.73%
AT3G10113(MYBrelated)/col-AT3G10113-DAP-Seq(GSE60143)/Homer	WNAAATATCWWN	1e-1	-3.013e+00	0.1046	540.0	2.93%	832.1	2.73%
VND2(NAC)/col-VND2-DAP-Seq(GSE60143)/Homer	DNCKTNNNNNNNAAG	1e-1	-3.009e+00	0.1048	1138.0	6.18%	1795.5	5.89%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-1	-2.984e+00	0.1073	345.0	1.87%	522.2	1.71%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-1	-2.978e+00	0.1076	736.0	4.00%	1147.2	3.76%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e-1	-2.960e+00	0.1094	116.0	0.63%	164.9	0.54%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e-1	-2.919e+00	0.1136	238.0	1.29%	354.9	1.16%
WRKY3(WRKY)/col-WRKY3-DAP-Seq(GSE60143)/Homer	NCKTTGACYDDN	1e-1	-2.916e+00	0.1137	673.0	3.65%	1047.8	3.44%
SHN3(AP2EREBP)/col-SHN3-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e-1	-2.904e+00	0.1148	866.0	4.70%	1358.1	4.45%
FRS9(ND)/col-FRS9-DAP-Seq(GSE60143)/Homer	RGAGAGAGAAAG	1e-1	-2.903e+00	0.1148	411.0	2.23%	628.9	2.06%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-1	-2.901e+00	0.1148	1455.0	7.90%	2312.2	7.58%
At5g29000(G2like)/col-At5g29000-DAP-Seq(GSE60143)/Homer	RGAATATTCYHH	1e-1	-2.869e+00	0.1182	320.0	1.74%	484.9	1.59%
MYB119(MYB)/colamp-MYB119-DAP-Seq(GSE60143)/Homer	YRACCGTTACDD	1e-1	-2.856e+00	0.1194	318.0	1.73%	481.0	1.58%
ANAC075(NAC)/col-ANAC075-DAP-Seq(GSE60143)/Homer	CTTSWWNWWSAAGYT	1e-1	-2.842e+00	0.1208	406.0	2.20%	622.0	2.04%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-1	-2.836e+00	0.1212	463.0	2.51%	712.8	2.34%
RKD2(RWPRK)/colamp-RKD2-DAP-Seq(GSE60143)/Homer	GACKTTTCRDCTTCC	1e-1	-2.820e+00	0.1230	923.0	5.01%	1452.2	4.76%
NTM1(NAC)/col-NTM1-DAP-Seq(GSE60143)/Homer	ACTTRTARAASAAGT	1e-1	-2.802e+00	0.1248	661.0	3.59%	1030.5	3.38%
At4g32800(AP2EREBP)/colamp-At4g32800-DAP-Seq(GSE60143)/Homer	DYCACCGACAHWWWH	1e-1	-2.791e+00	0.1260	106.0	0.58%	150.8	0.49%
ANAC062(NAC)/colamp-ANAC062-DAP-Seq(GSE60143)/Homer	TACTTANTNWNYAAG	1e-1	-2.777e+00	0.1275	468.0	2.54%	721.7	2.37%
AT2G01818(PLATZ)/col-AT2G01818-DAP-Seq(GSE60143)/Homer	TCTAGAABSTTC	1e-1	-2.776e+00	0.1275	268.0	1.45%	403.2	1.32%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-1	-2.769e+00	0.1279	175.0	0.95%	257.7	0.85%
AT1G19040(NAC)/col-AT1G19040-DAP-Seq(GSE60143)/Homer	CTTGNDNHNCAAGYW	1e-1	-2.765e+00	0.1282	157.0	0.85%	229.6	0.75%
ANAC092(NAC)/colamp-ANAC092-DAP-Seq(GSE60143)/Homer	WRCKTGWNNNWCAMG	1e-1	-2.707e+00	0.1355	461.0	2.50%	711.9	2.33%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e-1	-2.645e+00	0.1439	41.0	0.22%	53.7	0.18%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-1	-2.644e+00	0.1439	85.0	0.46%	119.3	0.39%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e-1	-2.644e+00	0.1439	362.0	1.97%	554.9	1.82%
CBF4(AP2EREBP)/colamp-CBF4-DAP-Seq(GSE60143)/Homer	NRCCGACDWNNNNNN	1e-1	-2.607e+00	0.1484	723.0	3.93%	1134.1	3.72%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e-1	-2.585e+00	0.1515	125.0	0.68%	181.8	0.60%
GATA6(C2C2gata)/col200-GATA6-DAP-Seq(GSE60143)/Homer	TAGATCTARAHH	1e-1	-2.545e+00	0.1572	162.0	0.88%	239.5	0.79%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-1	-2.466e+00	0.1699	482.0	2.62%	749.1	2.46%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-1	-2.451e+00	0.1721	863.0	4.69%	1364.9	4.48%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e-1	-2.436e+00	0.1743	167.0	0.91%	248.4	0.81%
WRKY45(WRKY)/col-WRKY45-DAP-Seq(GSE60143)/Homer	HNNNKTTGACTWWNH	1e-1	-2.418e+00	0.1770	406.0	2.20%	628.4	2.06%
MYB27(MYB)/colamp-MYB27-DAP-Seq(GSE60143)/Homer	TACCTAACWT	1e-1	-2.411e+00	0.1778	210.0	1.14%	316.8	1.04%
LCL1(MYBrelated)/colamp-LCL1-DAP-Seq(GSE60143)/Homer	NAAAATATCTWHWWN	1e-1	-2.410e+00	0.1778	170.0	0.92%	253.9	0.83%
WRKY40(WRKY)/colamp-WRKY40-DAP-Seq(GSE60143)/Homer	AHWAGTCAAC	1e-1	-2.394e+00	0.1802	624.0	3.39%	979.2	3.21%
At3g09600(MYBrelated)/colamp-At3g09600-DAP-Seq(GSE60143)/Homer	AAAATATCTT	1e-1	-2.392e+00	0.1802	570.0	3.09%	892.5	2.93%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e-1	-2.382e+00	0.1817	109.0	0.59%	158.6	0.52%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e-1	-2.372e+00	0.1830	34.0	0.18%	44.9	0.15%
GATA14(C2C2gata)/col-GATA14-DAP-Seq(GSE60143)/Homer	AYCAGATCTG	1e-1	-2.349e+00	0.1869	749.0	4.07%	1182.7	3.88%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e-1	-2.318e+00	0.1923	451.0	2.45%	702.3	2.30%
ANAC096(NAC)/colamp-ANAC096-DAP-Seq(GSE60143)/Homer	TACTTGWNNNWCAAG	1e-1	-2.313e+00	0.1928	788.0	4.28%	1246.2	4.09%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-2.295e+00	0.1960	145.0	0.79%	215.2	0.71%
HDG1(Homeobox)/col100-HDG1-DAP-Seq(GSE60143)/Homer	DDYAATTAATGH	1e0	-2.294e+00	0.1960	674.0	3.66%	1062.4	3.48%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-2.254e+00	0.2033	146.0	0.79%	217.4	0.71%
GATA11(C2C2gata)/col-GATA11-DAP-Seq(GSE60143)/Homer	DDHYYAGATCTR	1e0	-2.250e+00	0.2036	485.0	2.63%	758.0	2.49%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-2.250e+00	0.2036	1235.0	6.70%	1974.6	6.48%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	-2.247e+00	0.2036	85.0	0.46%	122.6	0.40%
MYB56(MYB)/colamp-MYB56-DAP-Seq(GSE60143)/Homer	HTAACGRMHY	1e0	-2.239e+00	0.2046	1048.0	5.69%	1670.6	5.48%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-2.226e+00	0.2070	860.0	4.67%	1365.5	4.48%
ANAC094(NAC)/col-ANAC094-DAP-Seq(GSE60143)/Homer	DVCGTRNNNNNYACG	1e0	-2.219e+00	0.2080	461.0	2.50%	720.1	2.36%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-2.217e+00	0.2080	292.0	1.59%	449.3	1.47%
At1g68670(G2like)/colamp-At1g68670-DAP-Seq(GSE60143)/Homer	WNWWHNRAAGATTCT	1e0	-2.178e+00	0.2157	655.0	3.56%	1034.7	3.39%
MYB113(MYB)/col-MYB113-DAP-Seq(GSE60143)/Homer	HNDAWTCMGTTAYWN	1e0	-2.171e+00	0.2167	611.0	3.32%	963.5	3.16%
WRKY71(WRKY)/col-WRKY71-DAP-Seq(GSE60143)/Homer	CKTTGACYWW	1e0	-2.142e+00	0.2227	797.0	4.33%	1265.5	4.15%
WRKY26(WRKY)/colamp-WRKY26-DAP-Seq(GSE60143)/Homer	CGTTGACTWDKN	1e0	-2.133e+00	0.2243	530.0	2.88%	833.5	2.73%
At4g01280(MYBrelated)/colamp-At4g01280-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-2.126e+00	0.2254	703.0	3.82%	1113.8	3.65%
REM16(ABI3VP1)/col-REM16-DAP-Seq(GSE60143)/Homer	DTTTTTSCCGSMAAA	1e0	-2.093e+00	0.2324	2.0	0.01%	0.0	0.00%
TGA5(bZIP)/col-TGA5-DAP-Seq(GSE60143)/Homer	NNGATGACGTCATCN	1e0	-2.084e+00	0.2342	88.0	0.48%	128.5	0.42%
ANAC053(NAC)/colamp-ANAC053-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e0	-2.078e+00	0.2351	643.0	3.49%	1017.7	3.34%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-2.060e+00	0.2388	62.0	0.34%	88.3	0.29%
ATHB6(Homeobox)/Arabidopsis-HB6-ChIP-Seq(GSE80564)/Homer	CAATNATTBN	1e0	-2.045e+00	0.2421	860.0	4.67%	1370.4	4.49%
At1g19000(MYBrelated)/colamp-At1g19000-DAP-Seq(GSE60143)/Homer	WWTGGATAADDT	1e0	-2.030e+00	0.2451	928.0	5.04%	1482.0	4.86%
AT5G61620(MYBrelated)/colamp-AT5G61620-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e0	-2.030e+00	0.2451	1730.0	9.39%	2790.7	9.15%
TGA4(bZIP)/colamp-TGA4-DAP-Seq(GSE60143)/Homer	RTGACGTCAKCW	1e0	-2.017e+00	0.2472	285.0	1.55%	441.6	1.45%
ANAC057(NAC)/colamp-ANAC057-DAP-Seq(GSE60143)/Homer	DVCKTGNNNNNCAMG	1e0	-2.006e+00	0.2497	871.0	4.73%	1389.0	4.56%
MYB118(MYB)/colamp-MYB118-DAP-Seq(GSE60143)/Homer	TAWCCGTTAC	1e0	-1.991e+00	0.2528	324.0	1.76%	504.0	1.65%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-1.965e+00	0.2590	57.0	0.31%	81.1	0.27%
AT4G00250(GeBP)/col-AT4G00250-DAP-Seq(GSE60143)/Homer	WDTGGATAAKRT	1e0	-1.964e+00	0.2590	624.0	3.39%	989.6	3.25%
CAMTA1(CAMTA)/col-CAMTA1-DAP-Seq(GSE60143)/Homer	WWAACGCGTT	1e0	-1.956e+00	0.2603	651.0	3.53%	1033.5	3.39%
MYB96(MYB)/colamp-MYB96-DAP-Seq(GSE60143)/Homer	WGGTRGTTGG	1e0	-1.941e+00	0.2637	1394.0	7.57%	2244.3	7.36%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-1.936e+00	0.2644	64.0	0.35%	93.0	0.31%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-1.936e+00	0.2644	1190.0	6.46%	1911.5	6.27%
TGA1(bZIP)/colamp-TGA1-DAP-Seq(GSE60143)/Homer	TGACGTCAKC	1e0	-1.919e+00	0.2680	407.0	2.21%	639.0	2.10%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.907e+00	0.2706	310.0	1.68%	483.3	1.59%
At3g04030(G2like)/col-At3g04030-DAP-Seq(GSE60143)/Homer	DRGAATCT	1e0	-1.893e+00	0.2738	1366.0	7.42%	2200.2	7.22%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-1.886e+00	0.2753	1143.0	6.21%	1836.8	6.02%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-1.885e+00	0.2753	23.0	0.12%	30.3	0.10%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.871e+00	0.2784	906.0	4.92%	1450.6	4.76%
WRKY14(WRKY)/colamp-WRKY14-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTN	1e0	-1.868e+00	0.2787	488.0	2.65%	771.9	2.53%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-1.865e+00	0.2788	3402.0	18.47%	5542.5	18.18%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e0	-1.861e+00	0.2796	541.0	2.94%	857.4	2.81%
bZIP50(bZIP)/colamp-bZIP50-DAP-Seq(GSE60143)/Homer	GATGACGTCA	1e0	-1.844e+00	0.2837	1117.0	6.06%	1795.6	5.89%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-1.818e+00	0.2905	1245.0	6.76%	2005.6	6.58%
GATA1(C2C2gata)/colamp-GATA1-DAP-Seq(GSE60143)/Homer	DDWWYYAGATCTRRW	1e0	-1.808e+00	0.2931	400.0	2.17%	630.5	2.07%
WRKY65(WRKY)/colamp-WRKY65-DAP-Seq(GSE60143)/Homer	AWWWAGTCAACG	1e0	-1.807e+00	0.2931	468.0	2.54%	740.1	2.43%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.802e+00	0.2936	101.0	0.55%	151.7	0.50%
CUC2(NAC)/colamp-CUC2-DAP-Seq(GSE60143)/Homer	TRCKTGTNNNWCAMG	1e0	-1.786e+00	0.2979	357.0	1.94%	561.9	1.84%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-1.773e+00	0.3012	11.0	0.06%	13.4	0.04%
VND3(NAC)/colamp-VND3-DAP-Seq(GSE60143)/Homer	TRCTTGWDNHWCAAG	1e0	-1.748e+00	0.3083	784.0	4.26%	1255.7	4.12%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-1.744e+00	0.3088	2239.0	12.16%	3637.2	11.93%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-1.713e+00	0.3178	1064.0	5.78%	1713.4	5.62%
MYB39(MYB)/col-MYB39-DAP-Seq(GSE60143)/Homer	WWAARKTAGGTGRAA	1e0	-1.702e+00	0.3207	187.0	1.02%	289.7	0.95%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.692e+00	0.3235	99.0	0.54%	149.7	0.49%
ANAC020(NAC)/col-ANAC020-DAP-Seq(GSE60143)/Homer	DVCKTGHNNNDCAAG	1e0	-1.668e+00	0.3307	723.0	3.93%	1158.3	3.80%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-1.664e+00	0.3312	252.0	1.37%	394.1	1.29%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-1.660e+00	0.3320	541.0	2.94%	862.4	2.83%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-1.660e+00	0.3320	1146.0	6.22%	1849.2	6.07%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-1.648e+00	0.3349	582.0	3.16%	929.5	3.05%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e0	-1.632e+00	0.3396	1248.0	6.78%	2017.6	6.62%
DEAR3(AP2EREBP)/colamp-DEAR3-DAP-Seq(GSE60143)/Homer	BCACCGACAWNNNNN	1e0	-1.609e+00	0.3468	343.0	1.86%	542.5	1.78%
HAT5(Homeobox)/colamp-HAT5-DAP-Seq(GSE60143)/Homer	DCAATWATTG	1e0	-1.604e+00	0.3477	158.0	0.86%	244.9	0.80%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-1.593e+00	0.3510	131.0	0.71%	201.6	0.66%
At5g47390(MYBrelated)/col-At5g47390-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e0	-1.581e+00	0.3546	1500.0	8.14%	2432.4	7.98%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.554e+00	0.3638	175.0	0.95%	272.9	0.90%
ANAC016(NAC)/col-ANAC016-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAMG	1e0	-1.549e+00	0.3647	1020.0	5.54%	1647.2	5.40%
At2g01060(G2like)/colamp-At2g01060-DAP-Seq(GSE60143)/Homer	AGATKCBNWW	1e0	-1.532e+00	0.3704	4708.0	25.56%	7715.2	25.31%
HSFA6A(HSF)/col-HSFA6A-DAP-Seq(GSE60143)/Homer	RGAAGNTTCTAGAAN	1e0	-1.525e+00	0.3722	65.0	0.35%	97.5	0.32%
CBF2(AP2EREBP)/colamp-CBF2-DAP-Seq(GSE60143)/Homer	YBRCCGACATNNNNN	1e0	-1.517e+00	0.3745	468.0	2.54%	747.3	2.45%
AIL7(AP2EREBP)/colamp-AIL7-DAP-Seq(GSE60143)/Homer	KCACRAWTYYCGAGG	1e0	-1.517e+00	0.3745	627.0	3.40%	1006.6	3.30%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.495e+00	0.3816	281.0	1.53%	444.2	1.46%
MYB57(MYB)/col-MYB57-DAP-Seq(GSE60143)/Homer	TTACCTAACT	1e0	-1.491e+00	0.3825	602.0	3.27%	966.3	3.17%
TGA6(bZIP)/colamp-TGA6-DAP-Seq(GSE60143)/Homer	TGACGTCABC	1e0	-1.487e+00	0.3832	624.0	3.39%	1002.5	3.29%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e0	-1.449e+00	0.3972	231.0	1.25%	365.0	1.20%
ATHB21(HB)/colamp-ATHB21-DAP-Seq(GSE60143)/Homer	YCAATWAT	1e0	-1.445e+00	0.3982	546.0	2.96%	876.5	2.87%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.444e+00	0.3982	289.0	1.57%	458.5	1.50%
NUC(C2H2)/col-NUC-DAP-Seq(GSE60143)/Homer	HAVAAAACGACAAAA	1e0	-1.443e+00	0.3982	101.0	0.55%	155.4	0.51%
At5g52660(MYBrelated)/colamp-At5g52660-DAP-Seq(GSE60143)/Homer	HAAAAATATCTW	1e0	-1.439e+00	0.3982	541.0	2.94%	868.7	2.85%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-1.420e+00	0.4050	256.0	1.39%	405.6	1.33%
HSFC1(HSF)/col-HSFC1-DAP-Seq(GSE60143)/Homer	HTTCTAGAADCTTCT	1e0	-1.394e+00	0.4152	321.0	1.74%	511.1	1.68%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-1.364e+00	0.4269	406.0	2.20%	650.6	2.13%
MYB3(MYB)/Arabidopsis-MYB3-ChIP-Seq(GSE80564)/Homer	GKTAGGTRGG	1e0	-1.359e+00	0.4282	2920.0	15.85%	4779.8	15.68%
RAV1(RAV)/colamp-RAV1-DAP-Seq(GSE60143)/Homer	TWWTTTCTGTTG	1e0	-1.345e+00	0.4336	779.0	4.23%	1260.5	4.13%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-1.334e+00	0.4374	4762.0	25.85%	7820.0	25.65%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.330e+00	0.4386	208.0	1.13%	329.9	1.08%
ZIM(C2C2gata)/col-ZIM-DAP-Seq(GSE60143)/Homer	ATCSRACGGTYRAGA	1e0	-1.326e+00	0.4394	10.0	0.05%	13.8	0.05%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.317e+00	0.4428	431.0	2.34%	692.2	2.27%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-1.312e+00	0.4441	80.0	0.43%	123.1	0.40%
bZIP44(bZIP)/colamp-bZIP44-DAP-Seq(GSE60143)/Homer	NDTGCCACGTCAGCH	1e0	-1.310e+00	0.4443	25.0	0.14%	36.7	0.12%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-1.305e+00	0.4458	241.0	1.31%	383.1	1.26%
At5g58900(MYBrelated)/colamp-At5g58900-DAP-Seq(GSE60143)/Homer	WWWTYTTATCTWWWW	1e0	-1.294e+00	0.4499	1684.0	9.14%	2748.5	9.02%
ANAC050(NAC)/colamp-ANAC050-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAAG	1e0	-1.293e+00	0.4499	682.0	3.70%	1103.1	3.62%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-1.259e+00	0.4642	35.0	0.19%	52.1	0.17%
AT5G22990(C2H2)/col-AT5G22990-DAP-Seq(GSE60143)/Homer	WCGAHDTCGWHN	1e0	-1.242e+00	0.4712	72.0	0.39%	111.7	0.37%
ANAC028(NAC)/col-ANAC028-DAP-Seq(GSE60143)/Homer	WRCTTGNNNNNCAAG	1e0	-1.231e+00	0.4758	863.0	4.69%	1402.8	4.60%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-1.198e+00	0.4907	1470.0	7.98%	2401.5	7.88%
LBD2(LOBAS2)/colamp-LBD2-DAP-Seq(GSE60143)/Homer	TCCGAWTTTTTCGGN	1e0	-1.192e+00	0.4928	334.0	1.81%	537.2	1.76%
KAN2(G2like)/colamp-KAN2-DAP-Seq(GSE60143)/Homer	ATATTCTY	1e0	-1.189e+00	0.4936	1785.0	9.69%	2921.0	9.58%
TBP3(MYBrelated)/col-TBP3-DAP-Seq(GSE60143)/Homer	VYTAGGGCAN	1e0	-1.177e+00	0.4984	1138.0	6.18%	1856.4	6.09%
AS2(LOBAS2)/col-AS2-DAP-Seq(GSE60143)/Homer	CCGDAAWWHMCGSCG	1e0	-1.177e+00	0.4984	110.0	0.60%	173.5	0.57%
Replumless(BLH)/Arabidopsis-RPL.GFP-ChIP-Seq(GSE78727)/Homer	HGTCWHATCA	1e0	-1.157e+00	0.5067	1366.0	7.42%	2232.3	7.32%
SGR5(C2H2)/colamp-SGR5-DAP-Seq(GSE60143)/Homer	TTTGTCTTTTTT	1e0	-1.152e+00	0.5083	816.0	4.43%	1328.1	4.36%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e0	-1.139e+00	0.5144	539.0	2.93%	874.8	2.87%
At1g74840(MYBrelated)/col100-At1g74840-DAP-Seq(GSE60143)/Homer	YHTTATCCAWWT	1e0	-1.113e+00	0.5270	843.0	4.58%	1374.9	4.51%
At2g44940(AP2EREBP)/colamp-At2g44940-DAP-Seq(GSE60143)/Homer	NYACCGACAHNNNNN	1e0	-1.111e+00	0.5270	190.0	1.03%	304.4	1.00%
CDM1(C3H)/colamp-CDM1-DAP-Seq(GSE60143)/Homer	CCGAWAWTWTCGGAN	1e0	-1.070e+00	0.5474	109.0	0.59%	173.3	0.57%
HSFA1E(HSF)/col-HSFA1E-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-1.070e+00	0.5474	109.0	0.59%	173.5	0.57%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.058e+00	0.5530	297.0	1.61%	480.3	1.58%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	-1.054e+00	0.5543	8.0	0.04%	11.3	0.04%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-1.043e+00	0.5595	370.0	2.01%	600.4	1.97%
SND2(NAC)/colamp-SND2-DAP-Seq(GSE60143)/Homer	CTTVWNNNWBAAGNW	1e0	-1.036e+00	0.5625	619.0	3.36%	1009.1	3.31%
ERF38(AP2EREBP)/col-ERF38-DAP-Seq(GSE60143)/Homer	CACCGACA	1e0	-1.032e+00	0.5635	499.0	2.71%	812.9	2.67%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-1.030e+00	0.5635	92.0	0.50%	146.3	0.48%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-1.006e+00	0.5763	859.0	4.66%	1405.6	4.61%
IDD5(C2H2)/colamp-IDD5-DAP-Seq(GSE60143)/Homer	TTTTGTCTTTTTBTK	1e0	-9.971e-01	0.5805	750.0	4.07%	1226.5	4.02%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-9.948e-01	0.5809	615.0	3.34%	1004.5	3.29%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-9.837e-01	0.5863	236.0	1.28%	382.1	1.25%
BPC1(BBRBPC)/colamp-BPC1-DAP-Seq(GSE60143)/Homer	GARGAGAGAGAA	1e0	-9.767e-01	0.5894	911.0	4.95%	1492.9	4.90%
ATHB7(Homeobox)/col-ATHB7-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-9.710e-01	0.5918	773.0	4.20%	1265.8	4.15%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-9.692e-01	0.5919	31.0	0.17%	48.2	0.16%
MYB83(MYB)/colamp-MYB83-DAP-Seq(GSE60143)/Homer	CACCAACCWH	1e0	-9.604e-01	0.5961	2458.0	13.34%	4045.4	13.27%
NAC2(NAC)/colamp-NAC2-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e0	-9.578e-01	0.5966	820.0	4.45%	1343.4	4.41%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-9.501e-01	0.6002	294.0	1.60%	478.6	1.57%
GT1(Trihelix)/col-GT1-DAP-Seq(GSE60143)/Homer	TTAACCATGGTTAAD	1e0	-9.490e-01	0.6002	9.0	0.05%	13.9	0.05%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-9.368e-01	0.6062	732.0	3.97%	1199.5	3.93%
CCA(Myb)/Arabidopsis-CCA.GFP-ChIP-Seq(GSE70533)/Homer	AGATATYTTT	1e0	-9.346e-01	0.6066	860.0	4.67%	1410.4	4.63%
RVE1(MYBrelated)/col-RVE1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-9.342e-01	0.6066	653.0	3.55%	1069.3	3.51%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-9.206e-01	0.6130	113.0	0.61%	182.1	0.60%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e0	-9.160e-01	0.6148	624.0	3.39%	1022.5	3.35%
Rap210(AP2EREBP)/col-Rap210-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e0	-9.119e-01	0.6164	633.0	3.44%	1037.3	3.40%
DDF1(AP2EREBP)/col-DDF1-DAP-Seq(GSE60143)/Homer	GCCGACAT	1e0	-9.054e-01	0.6193	413.0	2.24%	675.6	2.22%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-9.018e-01	0.6195	12.0	0.07%	18.9	0.06%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-9.018e-01	0.6195	12.0	0.07%	18.2	0.06%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-8.970e-01	0.6215	510.0	2.77%	835.7	2.74%
ANAC058(NAC)/col-ANAC058-DAP-Seq(GSE60143)/Homer	TWCTTGTDNNACAAG	1e0	-8.927e-01	0.6231	641.0	3.48%	1051.9	3.45%
LEP(AP2EREBP)/col-LEP-DAP-Seq(GSE60143)/Homer	CDCCGCCGTC	1e0	-8.841e-01	0.6275	625.0	3.39%	1025.2	3.36%
MYB121(MYB)/col-MYB121-DAP-Seq(GSE60143)/Homer	YNTACCTAACWW	1e0	-8.832e-01	0.6275	435.0	2.36%	712.4	2.34%
PLT1(AP2EREBP)/colamp-PLT1-DAP-Seq(GSE60143)/Homer	GCACGAWTYCCGAGG	1e0	-8.788e-01	0.6287	93.0	0.50%	150.1	0.49%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e0	-8.766e-01	0.6291	1111.0	6.03%	1827.1	5.99%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-8.736e-01	0.6300	320.0	1.74%	523.2	1.72%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-8.664e-01	0.6334	687.0	3.73%	1128.9	3.70%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-8.603e-01	0.6363	742.0	4.03%	1219.8	4.00%
EIN3(EIL)/col-EIN3-DAP-Seq(GSE60143)/Homer	ARATTCAATGWATYT	1e0	-8.598e-01	0.6363	130.0	0.71%	211.3	0.69%
VND4(NAC)/colamp-VND4-DAP-Seq(GSE60143)/Homer	WRCTTGWANWWCAAG	1e0	-8.579e-01	0.6363	808.0	4.39%	1328.4	4.36%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-8.422e-01	0.6447	576.0	3.13%	946.2	3.10%
HSF7(HSF)/colamp-HSF7-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-8.400e-01	0.6451	272.0	1.48%	445.6	1.46%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-8.191e-01	0.6576	805.0	4.37%	1325.3	4.35%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-8.174e-01	0.6577	3100.0	16.83%	5118.9	16.79%
bHLH28(bHLH)/col-bHLH28-DAP-Seq(GSE60143)/Homer	NHHTGTACGGAH	1e0	-7.995e-01	0.6685	193.0	1.05%	316.1	1.04%
CUC1(NAC)/col-CUC1-DAP-Seq(GSE60143)/Homer	TACTTGTNNNACAAG	1e0	-7.941e-01	0.6711	476.0	2.58%	783.6	2.57%
AGL13(MADS)/col-AGL13-DAP-Seq(GSE60143)/Homer	TWCCAWWTWTGGWAA	1e0	-7.899e-01	0.6728	58.0	0.31%	94.5	0.31%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-7.732e-01	0.6831	175.0	0.95%	287.3	0.94%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-7.678e-01	0.6856	2160.0	11.73%	3568.9	11.71%
WRKY43(WRKY)/colamp-WRKY43-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTT	1e0	-7.665e-01	0.6856	330.0	1.79%	543.0	1.78%
AGL95(ND)/col-AGL95-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-7.614e-01	0.6878	153.0	0.83%	251.6	0.83%
AT3G58630(Trihelix)/col-AT3G58630-DAP-Seq(GSE60143)/Homer	TCTCCGGCGA	1e0	-7.458e-01	0.6976	243.0	1.32%	400.7	1.31%
BPC6(BBRBPC)/col-BPC6-DAP-Seq(GSE60143)/Homer	YTYTCTCTCTCTCTA	1e0	-7.294e-01	0.7080	32.0	0.17%	52.7	0.17%
ANL2(HB)/col-ANL2-DAP-Seq(GSE60143)/Homer	CATTAATTGC	1e0	-7.257e-01	0.7094	620.0	3.37%	1024.8	3.36%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-7.165e-01	0.7148	87.0	0.47%	143.8	0.47%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-7.150e-01	0.7148	798.0	4.33%	1319.1	4.33%
AT1G10720(BSD)/col-AT1G10720-DAP-Seq(GSE60143)/Homer	TTCTAGAAKCTTCTA	1e0	-6.905e-01	0.7314	42.0	0.23%	69.5	0.23%
AT2G20400(G2like)/colamp-AT2G20400-DAP-Seq(GSE60143)/Homer	DNVGAATATTCBNHN	1e0	-6.846e-01	0.7345	144.0	0.78%	238.2	0.78%
WRKY30(WRKY)/colamp-WRKY30-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e0	-6.808e-01	0.7362	278.0	1.51%	460.8	1.51%
AT5G59990(C2C2COlike)/colamp-AT5G59990-DAP-Seq(GSE60143)/Homer	TCTCAACCGTTCATT	1e0	-6.790e-01	0.7363	22.0	0.12%	36.4	0.12%
ANAC038(NAC)/col-ANAC038-DAP-Seq(GSE60143)/Homer	ACACGTWAYC	1e0	-6.772e-01	0.7365	2691.0	14.61%	4455.4	14.61%
MYB3R5(MYB)/col-MYB3R5-DAP-Seq(GSE60143)/Homer	THYAACGGTHAWAWT	1e0	-6.701e-01	0.7405	75.0	0.41%	124.5	0.41%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-6.684e-01	0.7407	288.0	1.56%	477.7	1.57%
AT1G23810(Orphan)/col-AT1G23810-DAP-Seq(GSE60143)/Homer	TTCTAGAAGSTTCTA	1e0	-6.586e-01	0.7468	58.0	0.31%	96.2	0.32%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-6.562e-01	0.7474	64.0	0.35%	106.2	0.35%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-6.416e-01	0.7573	583.0	3.17%	967.0	3.17%
PLT3(AP2EREBP)/col-PLT3-DAP-Seq(GSE60143)/Homer	GCACGNWTHYCGAGG	1e0	-6.396e-01	0.7575	53.0	0.29%	88.4	0.29%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-6.368e-01	0.7585	65.0	0.35%	108.3	0.36%
MYB10(MYB)/col-MYB10-DAP-Seq(GSE60143)/Homer	YCCACCTACCHH	1e0	-6.305e-01	0.7621	573.0	3.11%	951.6	3.12%
At4g28140(AP2EREBP)/colamp-At4g28140-DAP-Seq(GSE60143)/Homer	DCCACCGACCAW	1e0	-6.302e-01	0.7621	380.0	2.06%	631.7	2.07%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-6.261e-01	0.7631	225.0	1.22%	374.9	1.23%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-6.243e-01	0.7633	234.0	1.27%	389.9	1.28%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-6.149e-01	0.7693	24.0	0.13%	40.6	0.13%
 Ik-1	NHTTGGGAATRCC	1e0	-6.042e-01	0.7764	18420.0	100.00%	30488.5	100.00%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-6.041e-01	0.7764	448.0	2.43%	745.1	2.44%
TCP17(TCP)/col-TCP17-DAP-Seq(GSE60143)/Homer	GTGGTCCCCA	1e0	-5.998e-01	0.7775	97.0	0.53%	162.7	0.53%
WRKY47(WRKY)/colamp-WRKY47-DAP-Seq(GSE60143)/Homer	WAAGTCAACGBT	1e0	-5.954e-01	0.7796	234.0	1.27%	390.4	1.28%
At2g03500(G2like)/col-At2g03500-DAP-Seq(GSE60143)/Homer	WWAGAATATTCT	1e0	-5.942e-01	0.7796	243.0	1.32%	405.6	1.33%
ATHB15(HB)/col-ATHB15-DAP-Seq(GSE60143)/Homer	GYAATSATTA	1e0	-5.830e-01	0.7870	333.0	1.81%	555.3	1.82%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-5.722e-01	0.7943	38.0	0.21%	64.8	0.21%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e0	-5.716e-01	0.7943	4102.0	22.27%	6804.3	22.32%
At1g49010(MYBrelated)/col-At1g49010-DAP-Seq(GSE60143)/Homer	RGATAASNTT	1e0	-5.676e-01	0.7956	2238.0	12.15%	3716.8	12.19%
dHNF4(NR)/Fly-HNF4-ChIP-Seq(GSE73675)/Homer	GGTCCAAAGTCCAMT	1e0	-5.593e-01	0.8009	51.0	0.28%	86.8	0.28%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-5.546e-01	0.8035	298.0	1.62%	498.0	1.63%
ZML1(C2C2gata)/colamp-ZML1-DAP-Seq(GSE60143)/Homer	ATCWYRACCGTTSRW	1e0	-5.525e-01	0.8040	10.0	0.05%	17.7	0.06%
GATA19(C2C2gata)/colamp-GATA19-DAP-Seq(GSE60143)/Homer	ATCSGATCVG	1e0	-5.448e-01	0.8090	58.0	0.31%	98.2	0.32%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-5.417e-01	0.8103	1162.0	6.31%	1935.0	6.35%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-5.332e-01	0.8159	68.0	0.37%	115.7	0.38%
MYB94(MYB)/col-MYB94-DAP-Seq(GSE60143)/Homer	WGGTRGTTGGKA	1e0	-5.281e-01	0.8188	658.0	3.57%	1098.9	3.60%
ANAC017(NAC)/colamp-ANAC017-DAP-Seq(GSE60143)/Homer	TMCTTGNNNNNCAAG	1e0	-5.247e-01	0.8204	130.0	0.71%	219.6	0.72%
ATHB20(Homeobox)/colamp-ATHB20-DAP-Seq(GSE60143)/Homer	CAATHATT	1e0	-5.240e-01	0.8204	460.0	2.50%	769.3	2.52%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-5.235e-01	0.8204	290.0	1.57%	486.1	1.59%
AGL25(MADS)/colamp-AGL25-DAP-Seq(GSE60143)/Homer	TTTCCATWTWTGGAA	1e0	-5.197e-01	0.8208	72.0	0.39%	122.7	0.40%
WRKY11(WRKY)/col-WRKY11-DAP-Seq(GSE60143)/Homer	SCGTTGACTTTN	1e0	-5.184e-01	0.8208	103.0	0.56%	174.2	0.57%
DEAR5(AP2EREBP)/col-DEAR5-DAP-Seq(GSE60143)/Homer	NDWTGTCGGTGRWDN	1e0	-5.084e-01	0.8276	162.0	0.88%	273.7	0.90%
CAMTA5(CAMTA)/col-CAMTA5-DAP-Seq(GSE60143)/Homer	ACGCGTTTTANACRC	1e0	-5.081e-01	0.8276	286.0	1.55%	480.9	1.58%
HDG7(HB)/col-HDG7-DAP-Seq(GSE60143)/Homer	WGCATTTAATGC	1e0	-5.025e-01	0.8301	190.0	1.03%	320.8	1.05%
ERF9(AP2EREBP)/colamp-ERF9-DAP-Seq(GSE60143)/Homer	AWATGGCGGCGG	1e0	-4.927e-01	0.8370	504.0	2.74%	844.7	2.77%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-4.913e-01	0.8370	1328.0	7.21%	2214.1	7.26%
MS188(MYB)/colamp-MS188-DAP-Seq(GSE60143)/Homer	WARKTAGGTRRA	1e0	-4.909e-01	0.8370	950.0	5.16%	1586.3	5.20%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-4.841e-01	0.8405	189.0	1.03%	319.3	1.05%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-4.752e-01	0.8468	1235.0	6.70%	2061.9	6.76%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-4.741e-01	0.8468	339.0	1.84%	570.0	1.87%
MYB49(MYB)/col-MYB49-DAP-Seq(GSE60143)/Homer	ARKTAGGTRR	1e0	-4.688e-01	0.8497	1417.0	7.69%	2364.0	7.75%
JKD(C2H2)/col-JKD-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTT	1e0	-4.673e-01	0.8497	194.0	1.05%	328.9	1.08%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-4.663e-01	0.8497	2674.0	14.52%	4451.8	14.60%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-4.643e-01	0.8498	225.0	1.22%	380.1	1.25%
AGL16(MADS)/col-AGL16-DAP-Seq(GSE60143)/Homer	TWCCHWATWDGGAAA	1e0	-4.539e-01	0.8574	118.0	0.64%	201.3	0.66%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-4.434e-01	0.8652	3135.0	17.02%	5219.9	17.12%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-4.414e-01	0.8656	846.0	4.59%	1417.8	4.65%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-4.296e-01	0.8747	1423.0	7.73%	2378.4	7.80%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-4.233e-01	0.8789	511.0	2.77%	860.2	2.82%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-4.209e-01	0.8798	206.0	1.12%	350.3	1.15%
At5g65130(AP2EREBP)/colamp-At5g65130-DAP-Seq(GSE60143)/Homer	CCRCCGACAWTN	1e0	-4.142e-01	0.8843	318.0	1.73%	538.8	1.77%
SPL5(SBP)/colamp-SPL5-DAP-Seq(GSE60143)/Homer	NNHGTACGGHNN	1e0	-4.109e-01	0.8860	340.0	1.85%	576.0	1.89%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	-4.026e-01	0.8920	7.0	0.04%	13.5	0.04%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-3.964e-01	0.8963	124.0	0.67%	213.3	0.70%
At1g14580(C2H2)/colamp-At1g14580-DAP-Seq(GSE60143)/Homer	CASAAAAMGACAAAA	1e0	-3.939e-01	0.8973	172.0	0.93%	294.9	0.97%
HAT2(Homeobox)/colamp-HAT2-DAP-Seq(GSE60143)/Homer	CYAATSATTR	1e0	-3.873e-01	0.9019	920.0	4.99%	1545.5	5.07%
MYB74(MYB)/colamp-MYB74-DAP-Seq(GSE60143)/Homer	YYYACCTACCWH	1e0	-3.751e-01	0.9117	794.0	4.31%	1336.4	4.38%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-3.732e-01	0.9121	546.0	2.96%	922.8	3.03%
RAP21(AP2EREBP)/colamp-RAP21-DAP-Seq(GSE60143)/Homer	BCACCGACAHNN	1e0	-3.603e-01	0.9227	167.0	0.91%	287.7	0.94%
BIM1(bHLH)/colamp-BIM1-DAP-Seq(GSE60143)/Homer	NNNNNNVTCACGTGM	1e0	-3.508e-01	0.9301	136.0	0.74%	235.1	0.77%
PTF1(TCP)/colamp-PTF1-DAP-Seq(GSE60143)/Homer	RDDGGGACCACA	1e0	-3.505e-01	0.9301	194.0	1.05%	333.6	1.09%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-3.468e-01	0.9311	130.0	0.71%	225.4	0.74%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-3.438e-01	0.9326	104.0	0.56%	181.5	0.60%
FUS3(ABI3VP1)/col-FUS3-DAP-Seq(GSE60143)/Homer	DNNWTNTGCATGKNN	1e0	-3.286e-01	0.9456	1146.0	6.22%	1928.7	6.33%
AT3G10580(MYBrelated)/colamp-AT3G10580-DAP-Seq(GSE60143)/Homer	TACCTAACWNHW	1e0	-3.248e-01	0.9478	527.0	2.86%	894.2	2.93%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-3.241e-01	0.9478	16.0	0.09%	30.6	0.10%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-3.147e-01	0.9547	921.0	5.00%	1554.6	5.10%
GATA20(C2C2gata)/colamp-GATA20-DAP-Seq(GSE60143)/Homer	TNGATCNDNM	1e0	-3.122e-01	0.9557	2589.0	14.06%	4333.0	14.21%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-3.069e-01	0.9595	704.0	3.82%	1192.1	3.91%
HAP3(CCAATHAP3)/col-HAP3-DAP-Seq(GSE60143)/Homer	TGATGGAW	1e0	-3.006e-01	0.9641	465.0	2.52%	792.1	2.60%
TCP16(TCP)/colamp-TCP16-DAP-Seq(GSE60143)/Homer	GTGGDCCYNNNNNNN	1e0	-2.965e-01	0.9668	1336.0	7.25%	2249.1	7.38%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-2.961e-01	0.9668	695.0	3.77%	1178.1	3.86%
IDD4(C2H2)/col-IDD4-DAP-Seq(GSE60143)/Homer	TTTGTCTTTWTB	1e0	-2.957e-01	0.9668	964.0	5.23%	1628.4	5.34%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-2.950e-01	0.9668	65.0	0.35%	116.5	0.38%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-2.899e-01	0.9668	8.0	0.04%	16.5	0.05%
WRKY17(WRKY)/colamp-WRKY17-DAP-Seq(GSE60143)/Homer	GCGTTGACTTTT	1e0	-2.899e-01	0.9668	8.0	0.04%	16.2	0.05%
AT1G72740(MYBrelated)/colamp-AT1G72740-DAP-Seq(GSE60143)/Homer	NNWWAMCCTAAHWNN	1e0	-2.876e-01	0.9673	1397.0	7.58%	2352.1	7.71%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-2.869e-01	0.9673	1025.0	5.56%	1731.2	5.68%
AT1G04880(ARID)/colamp-AT1G04880-DAP-Seq(GSE60143)/Homer	AAACTATATADTATA	1e0	-2.815e-01	0.9704	102.0	0.55%	180.3	0.59%
IDD2(C2H2)/colamp-IDD2-DAP-Seq(GSE60143)/Homer	HAVAAAAMGACAAAA	1e0	-2.785e-01	0.9720	140.0	0.76%	245.5	0.81%
AT3G42860(zfGRF)/col-AT3G42860-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e0	-2.708e-01	0.9781	234.0	1.27%	405.7	1.33%
MYB62(MYB)/colamp-MYB62-DAP-Seq(GSE60143)/Homer	NTACCTAACT	1e0	-2.666e-01	0.9809	1891.0	10.27%	3179.6	10.43%
WRKY8(WRKY)/colamp-WRKY8-DAP-Seq(GSE60143)/Homer	CGTTGACTTT	1e0	-2.645e-01	0.9816	94.0	0.51%	167.9	0.55%
HSF21(HSF)/col-HSF21-DAP-Seq(GSE60143)/Homer	CTTCTAGAAGMTTYW	1e0	-2.643e-01	0.9816	139.0	0.75%	244.2	0.80%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e0	-2.626e-01	0.9816	1830.0	9.93%	3078.3	10.10%
MYB116(MYB)/colamp-MYB116-DAP-Seq(GSE60143)/Homer	AGTTAGGCAN	1e0	-2.471e-01	0.9947	909.0	4.93%	1542.7	5.06%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-2.458e-01	0.9947	282.0	1.53%	488.7	1.60%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-2.426e-01	0.9964	101.0	0.55%	180.9	0.59%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-2.356e-01	1.0000	493.0	2.68%	845.1	2.77%
bZIP42(bZIP)/colamp-bZIP42-DAP-Seq(GSE60143)/Homer	GCCACGTCAGCA	1e0	-2.311e-01	1.0000	3.0	0.02%	7.5	0.02%
PHV(HB)/col-PHV-DAP-Seq(GSE60143)/Homer	RTAATSATTA	1e0	-2.282e-01	1.0000	403.0	2.19%	694.8	2.28%
WRKY46(WRKY)/colamp-WRKY46-DAP-Seq(GSE60143)/Homer	AAAGTCAACGSN	1e0	-2.260e-01	1.0000	43.0	0.23%	80.6	0.26%
GT3a(Trihelix)/col-GT3a-DAP-Seq(GSE60143)/Homer	WNACACGTGTYWWAW	1e0	-2.218e-01	1.0000	154.0	0.84%	272.9	0.90%
IDD7(C2H2)/col-IDD7-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTN	1e0	-2.212e-01	1.0000	418.0	2.27%	720.5	2.36%
WRKY7(WRKY)/colamp-WRKY7-DAP-Seq(GSE60143)/Homer	AAAAGTCAACGSHWD	1e0	-2.182e-01	1.0000	2.0	0.01%	5.8	0.02%
HAT1(Homeobox)/col-HAT1-DAP-Seq(GSE60143)/Homer	SCAATCATTGNN	1e0	-2.163e-01	1.0000	169.0	0.92%	298.6	0.98%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-2.127e-01	1.0000	523.0	2.84%	898.1	2.95%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-2.068e-01	1.0000	50.0	0.27%	93.6	0.31%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-2.062e-01	1.0000	967.0	5.25%	1645.4	5.40%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e0	-2.059e-01	1.0000	423.0	2.30%	730.3	2.40%
HSFB3(HSF)/colamp-HSFB3-DAP-Seq(GSE60143)/Homer	TTCTAGAAGMTTHTW	1e0	-2.031e-01	1.0000	86.0	0.47%	156.9	0.51%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-1.974e-01	1.0000	413.0	2.24%	714.3	2.34%
ATHB18(Homeobox)/colamp-ATHB18-DAP-Seq(GSE60143)/Homer	YCAATSATTG	1e0	-1.907e-01	1.0000	189.0	1.03%	334.3	1.10%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-1.886e-01	1.0000	484.0	2.63%	835.7	2.74%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-1.871e-01	1.0000	698.0	3.79%	1196.0	3.92%
AT5G56840(MYBrelated)/colamp-AT5G56840-DAP-Seq(GSE60143)/Homer	TGGATAAGGT	1e0	-1.830e-01	1.0000	1469.0	7.98%	2490.4	8.17%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.828e-01	1.0000	273.0	1.48%	478.6	1.57%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-1.792e-01	1.0000	87.0	0.47%	159.9	0.52%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-1.770e-01	1.0000	295.0	1.60%	516.9	1.70%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.751e-01	1.0000	444.0	2.41%	769.6	2.52%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e0	-1.741e-01	1.0000	742.0	4.03%	1272.6	4.17%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-1.736e-01	1.0000	218.0	1.18%	385.6	1.26%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-1.731e-01	1.0000	137.0	0.74%	246.4	0.81%
At5g66730(C2H2)/colamp-At5g66730-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTK	1e0	-1.711e-01	1.0000	297.0	1.61%	520.5	1.71%
SPL14(SBP)/col-SPL14-DAP-Seq(GSE60143)/Homer	NNWHTGTACGGAHNH	1e0	-1.697e-01	1.0000	112.0	0.61%	203.1	0.67%
At5g08520(MYBrelated)/colamp-At5g08520-DAP-Seq(GSE60143)/Homer	ADBSTTATCY	1e0	-1.695e-01	1.0000	1219.0	6.62%	2074.7	6.80%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.688e-01	1.0000	149.0	0.81%	267.1	0.88%
MYB4(MYB)/col200-MYB4-DAP-Seq(GSE60143)/Homer	WAGKTAGGTARR	1e0	-1.674e-01	1.0000	818.0	4.44%	1401.8	4.60%
AT1G01250(AP2EREBP)/col-AT1G01250-DAP-Seq(GSE60143)/Homer	YCACCGACAHTW	1e0	-1.664e-01	1.0000	78.0	0.42%	144.0	0.47%
ATHB33(ZFHD)/col-ATHB33-DAP-Seq(GSE60143)/Homer	NGTRATTAAK	1e0	-1.612e-01	1.0000	1597.0	8.67%	2709.5	8.89%
AT4G27900(C2C2COlike)/col-AT4G27900-DAP-Seq(GSE60143)/Homer	TCTCVACCGTTSATT	1e0	-1.596e-01	1.0000	4.0	0.02%	10.3	0.03%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-1.592e-01	1.0000	775.0	4.21%	1330.4	4.36%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e0	-1.588e-01	1.0000	2595.0	14.09%	4377.3	14.36%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-1.545e-01	1.0000	20.0	0.11%	41.4	0.14%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.510e-01	1.0000	565.0	3.07%	977.6	3.21%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-1.504e-01	1.0000	2672.0	14.51%	4508.8	14.79%
VRN1(ABI3VP1)/col-VRN1-DAP-Seq(GSE60143)/Homer	TTTTTTTTTT	1e0	-1.501e-01	1.0000	3.0	0.02%	8.4	0.03%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-1.477e-01	1.0000	1788.0	9.71%	3032.4	9.95%
AT1G24250(Orphan)/col-AT1G24250-DAP-Seq(GSE60143)/Homer	KTDGTTGGTDGTTGG	1e0	-1.476e-01	1.0000	363.0	1.97%	635.8	2.09%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e0	-1.446e-01	1.0000	371.0	2.01%	649.1	2.13%
Knotted(Homeobox)/Corn-KN1-ChIP-Seq(GSE39161)/Homer	GAYGNGACRGGN	1e0	-1.439e-01	1.0000	2145.0	11.64%	3630.5	11.91%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e0	-1.422e-01	1.0000	1519.0	8.25%	2583.6	8.47%
BOS1(MYB)/col-BOS1-DAP-Seq(GSE60143)/Homer	NNRCCTAACT	1e0	-1.391e-01	1.0000	1199.0	6.51%	2047.3	6.72%
BAM8(BES1)/col-BAM8-DAP-Seq(GSE60143)/Homer	NNWSACACGTGTSWN	1e0	-1.376e-01	1.0000	151.0	0.82%	273.7	0.90%
BIM3(bHLH)/col-BIM3-DAP-Seq(GSE60143)/Homer	TWVTCACGTGAB	1e0	-1.354e-01	1.0000	148.0	0.80%	268.0	0.88%
ZML2(C2C2gata)/col-ZML2-DAP-Seq(GSE60143)/Homer	CATCATCATC	1e0	-1.344e-01	1.0000	235.0	1.28%	418.7	1.37%
SPL3(SBP)/colamp-SPL3-DAP-Seq(GSE60143)/Homer	WDTTGTACGGAH	1e0	-1.264e-01	1.0000	27.0	0.15%	55.7	0.18%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-1.263e-01	1.0000	3458.0	18.77%	5827.4	19.11%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-1.258e-01	1.0000	4021.0	21.83%	6765.1	22.19%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.169e-01	1.0000	61.0	0.33%	117.1	0.38%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.144e-01	1.0000	84.0	0.46%	158.8	0.52%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.144e-01	1.0000	84.0	0.46%	158.8	0.52%
AT3G57600(AP2EREBP)/col-AT3G57600-DAP-Seq(GSE60143)/Homer	GGCGGTGG	1e0	-1.125e-01	1.0000	1647.0	8.94%	2806.7	9.21%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.120e-01	1.0000	301.0	1.63%	534.4	1.75%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-1.118e-01	1.0000	1346.0	7.31%	2301.2	7.55%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.103e-01	1.0000	2681.0	14.55%	4537.5	14.88%
HSFB4(HSF)/col-HSFB4-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-1.067e-01	1.0000	39.0	0.21%	78.0	0.26%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-1.043e-01	1.0000	599.0	3.25%	1043.7	3.42%
ANAC079(NAC)/colamp-ANAC079-DAP-Seq(GSE60143)/Homer	TACACGCAACCT	1e0	-9.646e-02	1.0000	410.0	2.23%	723.2	2.37%
GBF5(bZIP)/colamp-GBF5-DAP-Seq(GSE60143)/Homer	WKNWSACGTGGCAWN	1e0	-9.141e-02	1.0000	372.0	2.02%	659.1	2.16%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-8.799e-02	1.0000	1767.0	9.59%	3016.5	9.89%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-8.782e-02	1.0000	90.0	0.49%	171.2	0.56%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-8.610e-02	1.0000	323.0	1.75%	576.5	1.89%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-8.581e-02	1.0000	125.0	0.68%	233.6	0.77%
GATA15(C2C2gata)/col-GATA15-DAP-Seq(GSE60143)/Homer	KATGATCA	1e0	-8.457e-02	1.0000	1578.0	8.57%	2700.8	8.86%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-8.354e-02	1.0000	1000.0	5.43%	1727.3	5.67%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-8.189e-02	1.0000	43.0	0.23%	87.5	0.29%
HY5(bZIP)/colamp-HY5-DAP-Seq(GSE60143)/Homer	RRTSACGTSD	1e0	-7.978e-02	1.0000	975.0	5.29%	1686.4	5.53%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	-7.919e-02	1.0000	2.0	0.01%	7.8	0.03%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e0	-7.524e-02	1.0000	221.0	1.20%	402.5	1.32%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e0	-6.964e-02	1.0000	728.0	3.95%	1271.9	4.17%
MGP(C2H2)/colamp-MGP-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTW	1e0	-6.684e-02	1.0000	242.0	1.31%	440.4	1.44%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-6.424e-02	1.0000	116.0	0.63%	220.2	0.72%
FAR1(FAR1)/col-FAR1-DAP-Seq(GSE60143)/Homer	TKNNNYYCACGCGCY	1e0	-6.292e-02	1.0000	199.0	1.08%	366.9	1.20%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-6.084e-02	1.0000	1358.0	7.37%	2340.8	7.68%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-5.616e-02	1.0000	1714.0	9.31%	2942.0	9.65%
bZIP28(bZIP)/col-bZIP28-DAP-Seq(GSE60143)/Homer	TGCCACGTSABH	1e0	-5.467e-02	1.0000	345.0	1.87%	621.9	2.04%
ABF1(bZIP)/Arabidopsis-ABF1-ChIP-Seq(GSE80564)/Homer	CACGTGGC	1e0	-5.324e-02	1.0000	1431.0	7.77%	2467.1	8.09%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-5.286e-02	1.0000	1042.0	5.66%	1810.2	5.94%
AtIDD11(C2H2)/colamp-AtIDD11-DAP-Seq(GSE60143)/Homer	TTTGTCGTTT	1e0	-5.004e-02	1.0000	397.0	2.16%	713.0	2.34%
bZIP48(bZIP)/colamp-bZIP48-DAP-Seq(GSE60143)/Homer	DDWWKVTSACGTGGC	1e0	-4.850e-02	1.0000	406.0	2.20%	728.8	2.39%
ATAF1(NAC)/col-ATAF1-DAP-Seq(GSE60143)/Homer	YACGTMAY	1e0	-4.409e-02	1.0000	3215.0	17.45%	5468.7	17.94%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-4.373e-02	1.0000	188.0	1.02%	351.2	1.15%
ATHB25(ZFHD)/colamp-ATHB25-DAP-Seq(GSE60143)/Homer	TAATTAVB	1e0	-4.357e-02	1.0000	1350.0	7.33%	2336.3	7.66%
At3g11280(MYBrelated)/col-At3g11280-DAP-Seq(GSE60143)/Homer	GATAAGRT	1e0	-4.346e-02	1.0000	913.0	4.96%	1596.9	5.24%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-4.287e-02	1.0000	814.0	4.42%	1428.5	4.69%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-4.179e-02	1.0000	3053.0	16.57%	5199.4	17.05%
bHLH18(bHLH)/col-bHLH18-DAP-Seq(GSE60143)/Homer	CACGTGTTYCACGTG	1e0	-4.087e-02	1.0000	13.0	0.07%	33.4	0.11%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-3.998e-02	1.0000	355.0	1.93%	643.5	2.11%
ATHB34(ZFHD)/colamp-ATHB34-DAP-Seq(GSE60143)/Homer	TRATTARS	1e0	-3.763e-02	1.0000	934.0	5.07%	1635.3	5.36%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-3.742e-02	1.0000	3723.0	20.21%	6324.2	20.74%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-3.451e-02	1.0000	72.0	0.39%	146.9	0.48%
At5g22890(C2H2)/col-At5g22890-DAP-Seq(GSE60143)/Homer	NSAGGTKWTATCTGD	1e0	-3.088e-02	1.0000	50.0	0.27%	106.1	0.35%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-2.916e-02	1.0000	625.0	3.39%	1113.3	3.65%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-2.824e-02	1.0000	46.0	0.25%	99.3	0.33%
MYB63(MYB)/col-MYB63-DAP-Seq(GSE60143)/Homer	BHYACCWACCHH	1e0	-2.614e-02	1.0000	625.0	3.39%	1115.5	3.66%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-2.467e-02	1.0000	737.0	4.00%	1308.2	4.29%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-2.430e-02	1.0000	344.0	1.87%	631.9	2.07%
O2(bZIP)/Corn-O2-ChIP-Seq(GSE63991)/Homer	GCTGACGTGGCA	1e0	-2.360e-02	1.0000	182.0	0.99%	347.6	1.14%
AREB3(bZIP)/col-AREB3-DAP-Seq(GSE60143)/Homer	NKGMCACGTGDCMNN	1e0	-2.316e-02	1.0000	381.0	2.07%	696.4	2.28%
bZIP53(bZIP)/colamp-bZIP53-DAP-Seq(GSE60143)/Homer	NDNHSACGTGKMNNN	1e0	-2.239e-02	1.0000	398.0	2.16%	726.1	2.38%
ATHB24(ZFHD)/colamp-ATHB24-DAP-Seq(GSE60143)/Homer	TAATTAAS	1e0	-2.223e-02	1.0000	868.0	4.71%	1534.1	5.03%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-2.193e-02	1.0000	710.0	3.85%	1264.8	4.15%
ATHB23(ZFHD)/col-ATHB23-DAP-Seq(GSE60143)/Homer	HTAATTARNN	1e0	-2.130e-02	1.0000	1064.0	5.78%	1869.9	6.13%
GBF3(bZIP)/Arabidopsis-GBF3-ChIP-Seq(GSE80564)/Homer	TGCCACGTSAYC	1e0	-2.111e-02	1.0000	520.0	2.82%	938.9	3.08%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-2.068e-02	1.0000	179.0	0.97%	343.9	1.13%
SPL13(SBP)/col-SPL13-DAP-Seq(GSE60143)/Homer	WAHTGTACGGAH	1e0	-1.995e-02	1.0000	55.0	0.30%	118.5	0.39%
AT5G25475(ABI3VP1)/col-AT5G25475-DAP-Seq(GSE60143)/Homer	RNNRNCAAGCADNDB	1e0	-1.874e-02	1.0000	1702.0	9.24%	2954.3	9.69%
At2g45680(TCP)/colamp-At2g45680-DAP-Seq(GSE60143)/Homer	GTGGGNCCCACNDND	1e0	-1.751e-02	1.0000	107.0	0.58%	215.8	0.71%
At5g05790(MYBrelated)/col-At5g05790-DAP-Seq(GSE60143)/Homer	AYCTTATC	1e0	-1.672e-02	1.0000	953.0	5.17%	1685.0	5.53%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-1.426e-02	1.0000	2176.0	11.81%	3762.5	12.34%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-1.422e-02	1.0000	196.0	1.06%	377.9	1.24%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e0	-1.310e-02	1.0000	266.0	1.44%	502.7	1.65%
BZR1(BZR)/col-BZR1-DAP-Seq(GSE60143)/Homer	NNCRCACGTGCG	1e0	-1.261e-02	1.0000	127.0	0.69%	254.3	0.83%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.227e-02	1.0000	53.0	0.29%	117.1	0.38%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-1.138e-02	1.0000	277.0	1.50%	523.1	1.72%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-1.110e-02	1.0000	1200.0	6.51%	2115.2	6.94%
FEA4(bZIP)/Corn-FEA4-ChIP-Seq(GSE61954)/Homer	TGACGTCACS	1e0	-1.097e-02	1.0000	1362.0	7.39%	2391.8	7.84%
ABF2(bZIP)/col-ABF2-DAP-Seq(GSE60143)/Homer	KGMCACGTGDCMHHH	1e0	-8.878e-03	1.0000	276.0	1.50%	524.5	1.72%
MYB13(MYB)/col-MYB13-DAP-Seq(GSE60143)/Homer	HYCACCWACCHH	1e0	-8.433e-03	1.0000	927.0	5.03%	1654.1	5.43%
DDF2(AP2EREBP)/col-DDF2-DAP-Seq(GSE60143)/Homer	GATGTCGRCR	1e0	-8.076e-03	1.0000	16.0	0.09%	45.5	0.15%
bZIP16(bZIP)/colamp-bZIP16-DAP-Seq(GSE60143)/Homer	TGCCACGTGD	1e0	-7.848e-03	1.0000	354.0	1.92%	663.8	2.18%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-7.646e-03	1.0000	965.0	5.24%	1721.1	5.65%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-7.515e-03	1.0000	393.0	2.13%	732.4	2.40%
GBF6(bZIP)/colamp-GBF6-DAP-Seq(GSE60143)/Homer	WWTGMCACGTCABCW	1e0	-7.446e-03	1.0000	235.0	1.28%	453.1	1.49%
bZIP68(bZIP)/col-bZIP68-DAP-Seq(GSE60143)/Homer	WGCCACGTGK	1e0	-6.844e-03	1.0000	434.0	2.36%	805.4	2.64%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-6.579e-03	1.0000	1159.0	6.29%	2056.6	6.75%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-6.375e-03	1.0000	335.0	1.82%	632.5	2.07%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-6.213e-03	1.0000	537.0	2.92%	986.1	3.23%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-5.526e-03	1.0000	1598.0	8.68%	2808.3	9.21%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-5.473e-03	1.0000	401.0	2.18%	750.2	2.46%
At1g69690(TCP)/colamp-At1g69690-DAP-Seq(GSE60143)/Homer	NHGTGGGGCCCACHW	1e0	-5.034e-03	1.0000	474.0	2.57%	879.2	2.88%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-4.192e-03	1.0000	1447.0	7.86%	2557.1	8.39%
bHLH34(bHLH)/colamp-bHLH34-DAP-Seq(GSE60143)/Homer	HGWGRHWGACACGTG	1e0	-3.815e-03	1.0000	390.0	2.12%	735.9	2.41%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-3.757e-03	1.0000	135.0	0.73%	278.3	0.91%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-3.526e-03	1.0000	2197.0	11.93%	3835.3	12.58%
At4g18890(BZR)/col-At4g18890-DAP-Seq(GSE60143)/Homer	NDBRCACGTGYR	1e0	-3.465e-03	1.0000	237.0	1.29%	464.5	1.52%
MYB44(MYB)/colamp-MYB44-DAP-Seq(GSE60143)/Homer	CVGTTWWKTCNGTTA	1e0	-3.131e-03	1.0000	57.0	0.31%	132.2	0.43%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-2.424e-03	1.0000	2000.0	10.86%	3510.8	11.52%
bZIP3(bZIP)/col-bZIP3-DAP-Seq(GSE60143)/Homer	DWKNHSACGTGGCAD	1e0	-2.295e-03	1.0000	587.0	3.19%	1087.5	3.57%
WRKY21(WRKY)/colamp-WRKY21-DAP-Seq(GSE60143)/Homer	DCGTTGACTTTT	1e0	-2.139e-03	1.0000	74.0	0.40%	167.3	0.55%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-2.112e-03	1.0000	2754.0	14.95%	4790.6	15.71%
bZIP69(bZIP)/col-bZIP69-DAP-Seq(GSE60143)/Homer	GACAGCTGKCAW	1e0	-1.825e-03	1.0000	150.0	0.81%	311.2	1.02%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.824e-03	1.0000	215.0	1.17%	430.7	1.41%
TF3A(C2H2)/col-TF3A-DAP-Seq(GSE60143)/Homer	NNDDGAGGAGGWNNN	1e0	-1.310e-03	1.0000	2308.0	12.53%	4047.7	13.28%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-1.180e-03	1.0000	2014.0	10.93%	3550.2	11.64%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-9.490e-04	1.0000	506.0	2.75%	956.8	3.14%
TCP7(TCP)/col-TCP7-DAP-Seq(GSE60143)/Homer	GTGGGSCCCACHHNN	1e0	-8.700e-04	1.0000	1080.0	5.86%	1957.0	6.42%
VIP1(bZIP)/col-VIP1-DAP-Seq(GSE60143)/Homer	NTTGACAGCTGTCAN	1e0	-8.150e-04	1.0000	236.0	1.28%	475.9	1.56%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e0	-6.590e-04	1.0000	1740.0	9.45%	3095.4	10.15%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-5.570e-04	1.0000	1710.0	9.28%	3047.6	10.00%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e0	-4.770e-04	1.0000	466.0	2.53%	893.5	2.93%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-3.870e-04	1.0000	761.0	4.13%	1415.7	4.64%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-3.080e-04	1.0000	895.0	4.86%	1652.2	5.42%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e0	-2.360e-04	1.0000	337.0	1.83%	669.0	2.19%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e0	-2.040e-04	1.0000	1356.0	7.36%	2457.8	8.06%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-1.760e-04	1.0000	675.0	3.66%	1274.6	4.18%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.760e-04	1.0000	2461.0	13.36%	4351.1	14.27%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.650e-04	1.0000	1606.0	8.72%	2892.0	9.49%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-1.320e-04	1.0000	444.0	2.41%	867.5	2.85%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-1.320e-04	1.0000	2784.0	15.11%	4906.4	16.09%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-1.260e-04	1.0000	2319.0	12.59%	4116.1	13.50%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-9.700e-05	1.0000	809.0	4.39%	1518.0	4.98%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e0	-9.500e-05	1.0000	326.0	1.77%	657.7	2.16%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-8.400e-05	1.0000	431.0	2.34%	848.6	2.78%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-5.500e-05	1.0000	647.0	3.51%	1238.7	4.06%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e0	-5.400e-05	1.0000	717.0	3.89%	1362.3	4.47%
PIF7(bHLH)/col-PIF7-DAP-Seq(GSE60143)/Homer	CCACGTGGNH	1e0	-4.200e-05	1.0000	313.0	1.70%	641.0	2.10%
bHLH74(bHLH)/col-bHLH74-DAP-Seq(GSE60143)/Homer	DRATCACGTGAB	1e0	-4.000e-05	1.0000	383.0	2.08%	768.4	2.52%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e0	-3.600e-05	1.0000	1394.0	7.57%	2550.1	8.36%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-2.700e-05	1.0000	695.0	3.77%	1331.9	4.37%
At1g72010(TCP)/colamp-At1g72010-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e0	-2.000e-05	1.0000	1045.0	5.67%	1951.6	6.40%
At1g78700(BZR)/col-At1g78700-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNNNNN	1e0	-1.500e-05	1.0000	398.0	2.16%	804.3	2.64%
SeqBias: CA-repeat	CACACACACA	1e0	-9.000e-06	1.0000	8122.0	44.09%	13921.3	45.66%
At5g08330(TCP)/col-At5g08330-DAP-Seq(GSE60143)/Homer	GGRCCCAC	1e0	-4.000e-06	1.0000	1251.0	6.79%	2331.8	7.65%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e0	-3.000e-06	1.0000	1620.0	8.79%	2976.7	9.76%
ABI5(bZIP)/col-ABI5-DAP-Seq(GSE60143)/Homer	GCCACGTG	1e0	-3.000e-06	1.0000	570.0	3.09%	1129.8	3.71%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-3.000e-06	1.0000	6282.0	34.10%	10883.0	35.70%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e0	-3.000e-06	1.0000	1384.0	7.51%	2569.5	8.43%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e0	-3.000e-06	1.0000	671.0	3.64%	1312.7	4.31%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.000e-06	1.0000	2068.0	11.23%	3768.4	12.36%
At4g36780(BZR)/col-At4g36780-DAP-Seq(GSE60143)/Homer	NNNNNNCACGTGNNN	1e0	-1.000e-06	1.0000	384.0	2.08%	800.7	2.63%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.000e-06	1.0000	745.0	4.04%	1458.9	4.78%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.000e-06	1.0000	413.0	2.24%	856.3	2.81%
TCP20(TCP)/col-TCP20-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e0	-1.000e-06	1.0000	769.0	4.17%	1502.7	4.93%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e0	-1.000e-06	1.0000	3207.0	17.41%	5732.0	18.80%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-0.000e+00	1.0000	538.0	2.92%	1090.4	3.58%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-0.000e+00	1.0000	303.0	1.64%	670.7	2.20%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-0.000e+00	1.0000	2642.0	14.34%	4814.1	15.79%
BIM2(bHLH)/col-BIM2-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNN	1e0	-0.000e+00	1.0000	1052.0	5.71%	2062.6	6.77%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-0.000e+00	1.0000	3864.0	20.98%	6953.6	22.81%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-0.000e+00	1.0000	3034.0	16.47%	5555.4	18.22%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	3.5	0.01%
AT4G12670(MYBrelated)/col-AT4G12670-DAP-Seq(GSE60143)/Homer	AGGGTTTAGGGTTTA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%