Information for 20-GCTATAGCACAA (Motif 20)

C A T G T G A C G C A T T C G A G A C T G C T A A T C G G T A C T C G A A T G C T G C A G T C A
Reverse Opposite:
C A G T A C G T A T C G A C G T A C T G T A G C C A G T C T G A A G C T C G T A A C T G G T A C
p-value:1e-34
log p-value:-7.840e+01
Information Content per bp:1.665
Number of Target Sequences with motif44.0
Percentage of Target Sequences with motif0.17%
Number of Background Sequences with motif3.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets102.4 +/- 36.9bp
Average Position of motif in Background120.5 +/- 37.5bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NCU08034(RRM)/Neurospora_crassa-RNCMPT00209-PBM/HughesRNA

Match Rank:1
Score:0.80
Offset:4
Orientation:forward strand
Alignment:GCTATAGCACAA
----TAGCACAN
 C A T G T G A C G C A T T C G A G A C T G C T A A T C G G T A C T C G A A T G C T G C A G T C A
A C G T A C G T A C G T A C G T C G A T C G T A A C T G A G T C C G T A A G T C C T G A T C G A

CPO(RRM)/Drosophila_melanogaster-RNCMPT00133-PBM/HughesRNA

Match Rank:2
Score:0.73
Offset:4
Orientation:forward strand
Alignment:GCTATAGCACAA
----NTGCACA-
 C A T G T G A C G C A T T C G A G A C T G C T A A T C G G T A C T C G A A T G C T G C A G T C A
A C G T A C G T A C G T A C G T C T G A G C A T A C T G A G T C C G T A A G T C C G T A A C G T

PFI1695c(RRM)/Plasmodium_falciparum-RNCMPT00203-PBM/HughesRNA

Match Rank:3
Score:0.73
Offset:3
Orientation:forward strand
Alignment:GCTATAGCACAA
---CCAGCACA-
 C A T G T G A C G C A T T C G A G A C T G C T A A T C G G T A C T C G A A T G C T G C A G T C A
A C G T A C G T A C G T A G T C A G T C C G T A A C T G A G T C C G T A A G T C C G T A A C G T

MEC-8(RRM)/Caenorhabditis_elegans-RNCMPT00181-PBM/HughesRNA

Match Rank:4
Score:0.73
Offset:4
Orientation:forward strand
Alignment:GCTATAGCACAA
----NTGCACA-
 C A T G T G A C G C A T T C G A G A C T G C T A A T C G G T A C T C G A A T G C T G C A G T C A
A C G T A C G T A C G T A C G T C G T A C G A T A C T G A G T C C G T A A G T C C G T A A C G T

SNF(RRM)/Drosophila_melanogaster-RNCMPT00145-PBM/HughesRNA

Match Rank:5
Score:0.69
Offset:3
Orientation:forward strand
Alignment:GCTATAGCACAA
---ATTGCACA-
 C A T G T G A C G C A T T C G A G A C T G C T A A T C G G T A C T C G A A T G C T G C A G T C A
A C G T A C G T A C G T G C T A C G A T C G A T A C T G A G T C C G T A A G T C C T G A A C G T

Ot_0263(RRM)/Ostreococcus_tauri-RNCMPT00263-PBM/HughesRNA

Match Rank:6
Score:0.68
Offset:5
Orientation:forward strand
Alignment:GCTATAGCACAA
-----AGAACAA
 C A T G T G A C G C A T T C G A G A C T G C T A A T C G G T A C T C G A A T G C T G C A G T C A
A C G T A C G T A C G T A C G T A C G T C G T A A C T G C G T A C G T A A G T C C T G A C T G A

SNRPA(RRM)/Homo_sapiens-RNCMPT00071-PBM/HughesRNA

Match Rank:7
Score:0.67
Offset:4
Orientation:forward strand
Alignment:GCTATAGCACAA
----TTGCACA-
 C A T G T G A C G C A T T C G A G A C T G C T A A T C G G T A C T C G A A T G C T G C A G T C A
A C G T A C G T A C G T A C G T C G A T C G A T A C T G A G T C C G T A A G T C C T G A A C G T

MGA1/MA0336.1/Jaspar

Match Rank:8
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---GCTATAGCACAA------
AGGACTATAGAACACTCTAAA
 A C G T A C G T A C G T C A T G T G A C G C A T T C G A G A C T G C T A A T C G G T A C T C G A A T G C T G C A G T C A A C G T A C G T A C G T A C G T A C G T A C G T
C G T A C T A G T A C G T C G A G A T C A C G T C T G A C G A T T G C A C T A G C T G A C G T A A G T C T C G A A G T C C G A T G T A C G C A T C G T A G C T A T G C A

SPL11(SBP)/col100-SPL11-DAP-Seq(GSE60143)/Homer

Match Rank:9
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:GCTATAGCACAA
--DVAAGTACAR
 C A T G T G A C G C A T T C G A G A C T G C T A A T C G G T A C T C G A A T G C T G C A G T C A
A C G T A C G T C A T G T G C A G C T A T C G A A C T G C A G T C G T A T A G C C T G A C T G A

ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GCTATAGCACAA--
NGNTCTAGAACCNGV
 A C G T C A T G T G A C G C A T T C G A G A C T G C T A A T C G G T A C T C G A A T G C T G C A G T C A A C G T A C G T
C T G A T C A G G C T A A G C T A G T C G A C T C T G A C T A G T G C A C T G A A G T C G T A C G A T C A C T G T C G A