Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 25538)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 24652)	% of Background Sequences with Motif
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-16873	-3.885e+04	0.0000	13165.0	51.55%	340.2	1.38%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-13711	-3.157e+04	0.0000	13742.0	53.81%	703.9	2.86%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-436	-1.005e+03	0.0000	449.0	1.76%	18.2	0.07%
E2FA(E2FDP)/colamp-E2FA-DAP-Seq(GSE60143)/Homer	WWTGGCGCCAWWWNN	1e-353	-8.147e+02	0.0000	2219.0	8.69%	812.7	3.30%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-245	-5.646e+02	0.0000	3170.0	12.41%	1628.9	6.62%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-191	-4.404e+02	0.0000	3574.0	14.00%	2071.6	8.42%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-153	-3.540e+02	0.0000	8610.0	33.72%	6452.1	26.24%
SeqBias: CG bias	SSSSSSSSSS	1e-146	-3.366e+02	0.0000	21231.0	83.14%	18826.9	76.56%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-143	-3.305e+02	0.0000	3339.0	13.08%	2047.7	8.33%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-124	-2.859e+02	0.0000	7042.0	27.58%	5237.9	21.30%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-91	-2.117e+02	0.0000	13131.0	51.42%	11080.6	45.06%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-91	-2.106e+02	0.0000	5204.0	20.38%	3833.5	15.59%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-87	-2.007e+02	0.0000	9059.0	35.48%	7305.7	29.71%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e-72	-1.674e+02	0.0000	6438.0	25.21%	5046.7	20.52%
SeqBias: polyC-repeat	CCCCCCCCCC	1e-59	-1.371e+02	0.0000	25268.0	98.95%	23988.4	97.55%
At3g60580(C2H2)/col-At3g60580-DAP-Seq(GSE60143)/Homer	WTTYTACT	1e-52	-1.213e+02	0.0000	12648.0	49.53%	11003.1	44.74%
AZF1(C2H2)/colamp-AZF1-DAP-Seq(GSE60143)/Homer	DKSWCACT	1e-50	-1.156e+02	0.0000	13202.0	51.70%	11563.1	47.02%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-50	-1.155e+02	0.0000	3615.0	14.16%	2731.5	11.11%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-49	-1.139e+02	0.0000	5701.0	22.33%	4579.6	18.62%
bZIP18(bZIP)/colamp-bZIP18-DAP-Seq(GSE60143)/Homer	KGMCAGCTND	1e-46	-1.077e+02	0.0000	14195.0	55.59%	12561.1	51.08%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-44	-1.021e+02	0.0000	3295.0	12.90%	2496.9	10.15%
SeqBias: polyA-repeat	AAAAAAAAAA	1e-43	-1.008e+02	0.0000	24290.0	95.12%	22872.6	93.01%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-43	-9.998e+01	0.0000	5158.0	20.20%	4147.3	16.86%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e-39	-9.195e+01	0.0000	429.0	1.68%	202.2	0.82%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e-39	-8.992e+01	0.0000	2642.0	10.35%	1972.2	8.02%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-37	-8.606e+01	0.0000	3767.0	14.75%	2964.9	12.06%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-36	-8.425e+01	0.0000	4344.0	17.01%	3483.8	14.17%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-35	-8.139e+01	0.0000	231.0	0.90%	86.1	0.35%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-34	-8.001e+01	0.0000	140.0	0.55%	38.5	0.16%
SeqBias: A/T bias	WWWWWWWWWW	1e-33	-7.719e+01	0.0000	17601.0	68.93%	16068.8	65.34%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-33	-7.648e+01	0.0000	2516.0	9.85%	1906.2	7.75%
NGA4(ABI3VP1)/col-NGA4-DAP-Seq(GSE60143)/Homer	TKNTCAGGTG	1e-31	-7.269e+01	0.0000	7873.0	30.83%	6763.9	27.50%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-30	-7.125e+01	0.0000	1746.0	6.84%	1266.5	5.15%
CRF10(AP2EREBP)/col100-CRF10-DAP-Seq(GSE60143)/Homer	DCCGCCGYHA	1e-30	-7.119e+01	0.0000	3951.0	15.47%	3187.3	12.96%
JGL(C2H2)/col-JGL-DAP-Seq(GSE60143)/Homer	ACYTTCAGTT	1e-30	-6.925e+01	0.0000	3614.0	14.15%	2895.1	11.77%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-29	-6.853e+01	0.0000	1769.0	6.93%	1293.9	5.26%
ASHR1(ND)/col-ASHR1-DAP-Seq(GSE60143)/Homer	NTGGTGAN	1e-29	-6.680e+01	0.0000	3142.0	12.30%	2487.1	10.11%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-28	-6.669e+01	0.0000	238.0	0.93%	100.3	0.41%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-28	-6.614e+01	0.0000	1296.0	5.08%	905.1	3.68%
CRF4(AP2EREBP)/colamp-CRF4-DAP-Seq(GSE60143)/Homer	CGCCGCCA	1e-28	-6.553e+01	0.0000	2213.0	8.67%	1681.3	6.84%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-28	-6.541e+01	0.0000	2415.0	9.46%	1856.6	7.55%
DEL2(E2FDP)/col-DEL2-DAP-Seq(GSE60143)/Homer	WTTTCSCGCC	1e-27	-6.298e+01	0.0000	1117.0	4.37%	766.4	3.12%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-27	-6.247e+01	0.0000	1599.0	6.26%	1167.3	4.75%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e-27	-6.242e+01	0.0000	2412.0	9.45%	1864.8	7.58%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-26	-6.206e+01	0.0000	5218.0	20.43%	4375.4	17.79%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-25	-5.772e+01	0.0000	170.0	0.67%	65.7	0.27%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-24	-5.741e+01	0.0000	1507.0	5.90%	1104.0	4.49%
At5g62940(C2C2dof)/col-At5g62940-DAP-Seq(GSE60143)/Homer	WHWHHACTTTTT	1e-24	-5.692e+01	0.0000	7847.0	30.73%	6835.3	27.79%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-24	-5.628e+01	0.0000	2721.0	10.66%	2158.9	8.78%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-24	-5.536e+01	0.0000	8385.0	32.84%	7349.2	29.88%
At5g04390(C2H2)/col200-At5g04390-DAP-Seq(GSE60143)/Homer	AGTGANDN	1e-23	-5.492e+01	0.0000	13054.0	51.12%	11789.6	47.94%
MYB41(MYB)/col-MYB41-DAP-Seq(GSE60143)/Homer	BYTYACCTAA	1e-23	-5.445e+01	0.0000	938.0	3.67%	640.2	2.60%
LBD18(LOBAS2)/colamp-LBD18-DAP-Seq(GSE60143)/Homer	CKGAWWTTCHGS	1e-23	-5.439e+01	0.0000	5594.0	21.91%	4762.6	19.37%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-23	-5.334e+01	0.0000	9955.0	38.98%	8843.2	35.96%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-22	-5.169e+01	0.0000	3249.0	12.72%	2647.7	10.77%
MYB51(MYB)/col-MYB51-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e-21	-4.963e+01	0.0000	2026.0	7.93%	1575.6	6.41%
AT4G26030(C2H2)/col-AT4G26030-DAP-Seq(GSE60143)/Homer	BYYACCWACY	1e-21	-4.928e+01	0.0000	2154.0	8.44%	1688.3	6.87%
At1g75490(AP2EREBP)/colamp-At1g75490-DAP-Seq(GSE60143)/Homer	CACCGMCT	1e-21	-4.900e+01	0.0000	4281.0	16.76%	3592.1	14.61%
dof45(C2C2dof)/col-dof45-DAP-Seq(GSE60143)/Homer	NVAWAAAGTN	1e-21	-4.887e+01	0.0000	5598.0	21.92%	4799.8	19.52%
LBD23(LOBAS2)/colamp-LBD23-DAP-Seq(GSE60143)/Homer	GCGNAWWWTNCGCYW	1e-21	-4.878e+01	0.0000	2316.0	9.07%	1832.5	7.45%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-20	-4.772e+01	0.0000	954.0	3.74%	669.2	2.72%
AT1G47655(C2C2dof)/colamp-AT1G47655-DAP-Seq(GSE60143)/Homer	YHACTTTTTS	1e-20	-4.742e+01	0.0000	8089.0	31.68%	7127.3	28.98%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-20	-4.639e+01	0.0000	2021.0	7.91%	1583.0	6.44%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-19	-4.589e+01	0.0000	2531.0	9.91%	2034.0	8.27%
AT3G52440(C2C2dof)/colamp-AT3G52440-DAP-Seq(GSE60143)/Homer	DTHACTTTTT	1e-19	-4.504e+01	0.0000	5243.0	20.53%	4496.4	18.28%
AT1G28160(AP2EREBP)/colamp-AT1G28160-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e-19	-4.483e+01	0.0000	5647.0	22.11%	4870.5	19.81%
ERF10(AP2EREBP)/col-ERF10-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e-19	-4.432e+01	0.0000	2330.0	9.12%	1863.3	7.58%
AT5G23930(mTERF)/col-AT5G23930-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e-19	-4.393e+01	0.0000	5726.0	22.42%	4949.9	20.13%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-18	-4.327e+01	0.0000	1710.0	6.70%	1325.0	5.39%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-18	-4.308e+01	0.0000	2022.0	7.92%	1597.6	6.50%
ERF105(AP2EREBP)/colamp-ERF105-DAP-Seq(GSE60143)/Homer	TGGCGGCT	1e-18	-4.295e+01	0.0000	4427.0	17.34%	3760.9	15.29%
MYB67(MYB)/col-MYB67-DAP-Seq(GSE60143)/Homer	YYYACCTAAC	1e-18	-4.258e+01	0.0000	2055.0	8.05%	1628.4	6.62%
At5g18450(AP2EREBP)/col-At5g18450-DAP-Seq(GSE60143)/Homer	CACCGCTT	1e-18	-4.174e+01	0.0000	4707.0	18.43%	4024.1	16.36%
MYB55(MYB)/colamp-MYB55-DAP-Seq(GSE60143)/Homer	YACCWAMC	1e-18	-4.172e+01	0.0000	2360.0	9.24%	1901.2	7.73%
At2g33710(AP2EREBP)/colamp-At2g33710-DAP-Seq(GSE60143)/Homer	WTKGCGGCKR	1e-17	-4.129e+01	0.0000	4903.0	19.20%	4207.8	17.11%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-17	-4.105e+01	0.0000	1539.0	6.03%	1184.8	4.82%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e-17	-3.994e+01	0.0000	17213.0	67.41%	15949.5	64.86%
ERF7(AP2EREBP)/col-ERF7-DAP-Seq(GSE60143)/Homer	ATGRCGGCGG	1e-16	-3.894e+01	0.0000	3651.0	14.30%	3076.4	12.51%
AT2G15740(C2H2)/col-AT2G15740-DAP-Seq(GSE60143)/Homer	DHNDWATCGATD	1e-16	-3.872e+01	0.0000	1172.0	4.59%	877.5	3.57%
HuR(?)/HEK293-HuR-CLIP-Seq(GSE87887)/Homer	BTTTGGTTTG	1e-16	-3.863e+01	0.0000	7291.0	28.55%	6445.1	26.21%
ERF11(AP2EREBP)/col-ERF11-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e-16	-3.838e+01	0.0000	2643.0	10.35%	2169.7	8.82%
TCX2(CPP)/colamp-TCX2-DAP-Seq(GSE60143)/Homer	NNWWTTYRAAHN	1e-16	-3.690e+01	0.0000	3216.0	12.59%	2693.4	10.95%
ERF15(AP2EREBP)/colamp-ERF15-DAP-Seq(GSE60143)/Homer	WDHAGCMGCCAT	1e-15	-3.664e+01	0.0000	6435.0	25.20%	5660.5	23.02%
ERF13(AP2EREBP)/colamp-ERF13-DAP-Seq(GSE60143)/Homer	TYAGCCGCCATT	1e-15	-3.649e+01	0.0000	3156.0	12.36%	2641.6	10.74%
AT2G28810(C2C2dof)/colamp-AT2G28810-DAP-Seq(GSE60143)/Homer	VAAAAAGTWA	1e-15	-3.645e+01	0.0000	5453.0	21.35%	4748.9	19.31%
MYB58(MYB)/colamp-MYB58-DAP-Seq(GSE60143)/Homer	YYYACCWACC	1e-15	-3.640e+01	0.0000	2035.0	7.97%	1637.4	6.66%
TCP1(TCP)/col-TCP1-DAP-Seq(GSE60143)/Homer	GGGGGCCCMMCN	1e-15	-3.597e+01	0.0000	1432.0	5.61%	1110.3	4.51%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-15	-3.573e+01	0.0000	9222.0	36.11%	8289.5	33.71%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e-15	-3.482e+01	0.0000	435.0	1.70%	279.6	1.14%
MYB61(MYB)/colamp-MYB61-DAP-Seq(GSE60143)/Homer	HCYACCTACC	1e-15	-3.469e+01	0.0000	3234.0	12.66%	2722.9	11.07%
SOL1(CPP)/colamp-SOL1-DAP-Seq(GSE60143)/Homer	ATTTAAATHN	1e-14	-3.448e+01	0.0000	3161.0	12.38%	2657.4	10.81%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-14	-3.420e+01	0.0000	2550.0	9.99%	2107.9	8.57%
ERF5(AP2EREBP)/colamp-ERF5-DAP-Seq(GSE60143)/Homer	DCMGCCGCCA	1e-14	-3.353e+01	0.0000	1708.0	6.69%	1361.5	5.54%
MYB107(MYB)/col-MYB107-DAP-Seq(GSE60143)/Homer	RGTWGGTRRR	1e-14	-3.282e+01	0.0000	3539.0	13.86%	3011.2	12.24%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-14	-3.272e+01	0.0000	1166.0	4.57%	892.3	3.63%
OBP3(C2C2dof)/col-OBP3-DAP-Seq(GSE60143)/Homer	NYWACTTTTT	1e-14	-3.269e+01	0.0000	7009.0	27.45%	6229.0	25.33%
ESE1(AP2EREBP)/col-ESE1-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e-14	-3.244e+01	0.0000	2988.0	11.70%	2512.8	10.22%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-14	-3.238e+01	0.0000	1802.0	7.06%	1449.9	5.90%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-13	-3.173e+01	0.0000	4152.0	16.26%	3580.6	14.56%
MYB17(MYB)/colamp-MYB17-DAP-Seq(GSE60143)/Homer	GGTAGGTGRG	1e-13	-3.168e+01	0.0000	1398.0	5.47%	1097.0	4.46%
AT2G20110(CPP)/colamp-AT2G20110-DAP-Seq(GSE60143)/Homer	ATTYAAATHY	1e-13	-3.152e+01	0.0000	3036.0	11.89%	2561.6	10.42%
Adof1(C2C2dof)/col-Adof1-DAP-Seq(GSE60143)/Homer	NRWAAAGYDV	1e-13	-3.146e+01	0.0000	6168.0	24.15%	5452.7	22.17%
SHN3(AP2EREBP)/col-SHN3-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e-13	-3.136e+01	0.0000	1488.0	5.83%	1178.0	4.79%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-13	-3.113e+01	0.0000	6441.0	25.22%	5710.8	23.22%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e-13	-3.112e+01	0.0000	3727.0	14.60%	3195.0	12.99%
OBP1(C2C2dof)/col-OBP1-DAP-Seq(GSE60143)/Homer	NHHACTTTWT	1e-13	-2.994e+01	0.0000	6287.0	24.62%	5576.5	22.68%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e-12	-2.950e+01	0.0000	7494.0	29.35%	6713.6	27.30%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-12	-2.929e+01	0.0000	3480.0	13.63%	2980.5	12.12%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-12	-2.924e+01	0.0000	2249.0	8.81%	1863.7	7.58%
LBD19(LOBAS2)/colamp-LBD19-DAP-Seq(GSE60143)/Homer	CCKGAAWTTCMGGAW	1e-12	-2.908e+01	0.0000	4048.0	15.85%	3503.7	14.25%
AT3G12130(C3H)/colamp-AT3G12130-DAP-Seq(GSE60143)/Homer	TMACTTTTTV	1e-12	-2.898e+01	0.0000	5665.0	22.18%	5003.1	20.34%
dof24(C2C2dof)/col-dof24-DAP-Seq(GSE60143)/Homer	TWMCTTTTTG	1e-12	-2.875e+01	0.0000	4657.0	18.24%	4068.9	16.55%
ERF115(AP2EREBP)/colamp-ERF115-DAP-Seq(GSE60143)/Homer	WTKRCGGCGB	1e-12	-2.836e+01	0.0000	4336.0	16.98%	3774.3	15.35%
AT5G63260(C3H)/col-AT5G63260-DAP-Seq(GSE60143)/Homer	RAAAAAGTRA	1e-12	-2.834e+01	0.0000	5376.0	21.05%	4739.7	19.27%
AT5G47660(Trihelix)/colamp-AT5G47660-DAP-Seq(GSE60143)/Homer	AWTTTTACCG	1e-12	-2.824e+01	0.0000	3028.0	11.86%	2574.6	10.47%
ERF4(AP2EREBP)/colamp-ERF4-DAP-Seq(GSE60143)/Homer	WDWTGGCGGCGG	1e-12	-2.817e+01	0.0000	2877.0	11.27%	2437.2	9.91%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e-12	-2.790e+01	0.0000	5533.0	21.67%	4889.4	19.88%
PUCHI(AP2EREBP)/colamp-PUCHI-DAP-Seq(GSE60143)/Homer	GCGCCGTY	1e-12	-2.773e+01	0.0000	2466.0	9.66%	2067.9	8.41%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-12	-2.765e+01	0.0000	1608.0	6.30%	1299.1	5.28%
ERF104(AP2EREBP)/col-ERF104-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e-11	-2.701e+01	0.0000	3572.0	13.99%	3080.7	12.53%
TGA10(bZIP)/colamp-TGA10-DAP-Seq(GSE60143)/Homer	ATGACGTC	1e-11	-2.698e+01	0.0000	968.0	3.79%	742.7	3.02%
MYB30(MYB)/colamp-MYB30-DAP-Seq(GSE60143)/Homer	AGGTAGTTGG	1e-11	-2.690e+01	0.0000	2592.0	10.15%	2186.1	8.89%
MYB93(MYB)/colamp-MYB93-DAP-Seq(GSE60143)/Homer	GGTAGGTGRD	1e-11	-2.667e+01	0.0000	2490.0	9.75%	2095.5	8.52%
ERF2(AP2EREBP)/colamp-ERF2-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e-11	-2.659e+01	0.0000	2645.0	10.36%	2236.4	9.09%
Tal1	CATCTG	1e-11	-2.657e+01	0.0000	3451.0	13.51%	2972.9	12.09%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-11	-2.610e+01	0.0000	1757.0	6.88%	1440.0	5.86%
MYB99(MYB)/colamp-MYB99-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e-11	-2.601e+01	0.0000	2009.0	7.87%	1665.8	6.77%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-11	-2.600e+01	0.0000	1562.0	6.12%	1266.7	5.15%
MYB101(MYB)/colamp-MYB101-DAP-Seq(GSE60143)/Homer	TAACNRMY	1e-11	-2.591e+01	0.0000	4200.0	16.45%	3667.6	14.91%
DEL1(E2FDP)/colamp-DEL1-DAP-Seq(GSE60143)/Homer	TTCCCGCCAA	1e-11	-2.563e+01	0.0000	14.0	0.05%	1.5	0.01%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-11	-2.561e+01	0.0000	1660.0	6.50%	1355.8	5.51%
DEAR2(AP2EREBP)/colamp-DEAR2-DAP-Seq(GSE60143)/Homer	HCACCGACAWHD	1e-11	-2.557e+01	0.0000	2092.0	8.19%	1742.8	7.09%
ABR1(AP2EREBP)/colamp-ABR1-DAP-Seq(GSE60143)/Homer	AAATGGCGGCGG	1e-11	-2.540e+01	0.0000	2595.0	10.16%	2198.7	8.94%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-11	-2.534e+01	0.0000	6499.0	25.45%	5816.1	23.65%
ERF8(AP2EREBP)/colamp-ERF8-DAP-Seq(GSE60143)/Homer	CGCCGYCATW	1e-10	-2.531e+01	0.0000	2881.0	11.28%	2459.3	10.00%
STZ(C2H2)/colamp-STZ-DAP-Seq(GSE60143)/Homer	HNBTCACT	1e-10	-2.510e+01	0.0000	12989.0	50.87%	11995.1	48.78%
AT5G66940(C2C2dof)/col-AT5G66940-DAP-Seq(GSE60143)/Homer	NNHACTTTWT	1e-10	-2.497e+01	0.0000	4437.0	17.38%	3894.8	15.84%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-10	-2.483e+01	0.0000	3824.0	14.97%	3328.1	13.53%
RAP211(AP2EREBP)/colamp-RAP211-DAP-Seq(GSE60143)/Homer	RGCCGGCYWW	1e-10	-2.466e+01	0.0000	6358.0	24.90%	5690.1	23.14%
SeqBias: TA-repeat	TATATATATA	1e-10	-2.436e+01	0.0000	5259.0	20.59%	4664.5	18.97%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-10	-2.436e+01	0.0000	3488.0	13.66%	3022.4	12.29%
RAP26(AP2EREBP)/colamp-RAP26-DAP-Seq(GSE60143)/Homer	HDATGGCGGCGG	1e-10	-2.424e+01	0.0000	3239.0	12.68%	2794.2	11.36%
MYB92(MYB)/colamp-MYB92-DAP-Seq(GSE60143)/Homer	GGTAGGTR	1e-10	-2.397e+01	0.0000	2334.0	9.14%	1970.8	8.01%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-10	-2.392e+01	0.0000	1191.0	4.66%	948.9	3.86%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e-10	-2.388e+01	0.0000	1888.0	7.39%	1568.6	6.38%
AT1G20910(ARID)/col-AT1G20910-DAP-Seq(GSE60143)/Homer	THAATTRAWN	1e-10	-2.351e+01	0.0000	3013.0	11.80%	2592.1	10.54%
CDF3(C2C2dof)/colamp-CDF3-DAP-Seq(GSE60143)/Homer	AAAAGTRM	1e-10	-2.338e+01	0.0000	3948.0	15.46%	3454.8	14.05%
MYB3(MYB)/Arabidopsis-MYB3-ChIP-Seq(GSE80564)/Homer	GKTAGGTRGG	1e-10	-2.317e+01	0.0000	4092.0	16.02%	3589.3	14.60%
RAP212(AP2EREBP)/col-RAP212-DAP-Seq(GSE60143)/Homer	CGCCGCCATTTT	1e-9	-2.298e+01	0.0000	2113.0	8.27%	1776.3	7.22%
BBX31(Orphan)/col-BBX31-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e-9	-2.291e+01	0.0000	3487.0	13.66%	3032.6	12.33%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-9	-2.290e+01	0.0000	690.0	2.70%	518.8	2.11%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-9	-2.289e+01	0.0000	1187.0	4.65%	949.8	3.86%
At3g45610(C2C2dof)/col-At3g45610-DAP-Seq(GSE60143)/Homer	TWACTTTTTS	1e-9	-2.287e+01	0.0000	3339.0	13.08%	2896.6	11.78%
AT5G02460(C2C2dof)/col-AT5G02460-DAP-Seq(GSE60143)/Homer	CHCCTTTT	1e-9	-2.286e+01	0.0000	4938.0	19.34%	4378.9	17.81%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e-9	-2.277e+01	0.0000	1525.0	5.97%	1249.2	5.08%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-9	-2.259e+01	0.0000	524.0	2.05%	379.1	1.54%
TGA3(bZIP)/colamp-TGA3-DAP-Seq(GSE60143)/Homer	WTGATGACGTCATCW	1e-9	-2.245e+01	0.0000	96.0	0.38%	46.0	0.19%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e-9	-2.222e+01	0.0000	840.0	3.29%	650.0	2.64%
TGA5(bZIP)/col-TGA5-DAP-Seq(GSE60143)/Homer	NNGATGACGTCATCN	1e-9	-2.206e+01	0.0000	139.0	0.54%	75.3	0.31%
AT4G18450(AP2EREBP)/col-AT4G18450-DAP-Seq(GSE60143)/Homer	ATGGCGGCKG	1e-9	-2.176e+01	0.0000	1490.0	5.83%	1223.2	4.97%
ARF2(ARF)/col-ARF2-DAP-Seq(GSE60143)/Homer	TTGTCGGMWN	1e-9	-2.164e+01	0.0000	5876.0	23.01%	5267.8	21.42%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e-9	-2.156e+01	0.0000	1170.0	4.58%	940.6	3.82%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-9	-2.155e+01	0.0000	2025.0	7.93%	1705.1	6.93%
GT2(Trihelix)/colamp-GT2-DAP-Seq(GSE60143)/Homer	AMGGTAAAWWWN	1e-9	-2.142e+01	0.0000	2194.0	8.59%	1859.3	7.56%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-9	-2.125e+01	0.0000	9335.0	36.56%	8542.5	34.74%
ASL18(LOBAS2)/colamp-ASL18-DAP-Seq(GSE60143)/Homer	CCGGAAAWTCMGGAR	1e-9	-2.112e+01	0.0000	4040.0	15.82%	3558.1	14.47%
At2g41835(C2H2)/col-At2g41835-DAP-Seq(GSE60143)/Homer	TTTGAAAA	1e-9	-2.093e+01	0.0000	1152.0	4.51%	927.4	3.77%
SRS7(SRS)/colamp-SRS7-DAP-Seq(GSE60143)/Homer	HATAGGTTTH	1e-8	-2.066e+01	0.0000	7344.0	28.76%	6660.7	27.08%
OBP4(C2C2dof)/col-OBP4-DAP-Seq(GSE60143)/Homer	WTTHACTTTTTB	1e-8	-2.055e+01	0.0000	3134.0	12.27%	2725.9	11.08%
AT1G71450(AP2EREBP)/col-AT1G71450-DAP-Seq(GSE60143)/Homer	DHDWTGTCGGTG	1e-8	-2.042e+01	0.0000	3523.0	13.80%	3085.9	12.55%
MYB73(MYB)/col-MYB73-DAP-Seq(GSE60143)/Homer	NNNNHAACNGHHDHN	1e-8	-2.041e+01	0.0000	3876.0	15.18%	3412.8	13.88%
SeqBias: C/A-bias	MMMMMMMMMM	1e-8	-2.035e+01	0.0000	25455.0	99.68%	24450.7	99.42%
ERF3(AP2EREBP)/colamp-ERF3-DAP-Seq(GSE60143)/Homer	ATGGCGGCGG	1e-8	-2.007e+01	0.0000	2092.0	8.19%	1775.9	7.22%
MYB88(MYB)/col-MYB88-DAP-Seq(GSE60143)/Homer	HNACGCTCCT	1e-8	-1.992e+01	0.0000	5868.0	22.98%	5277.1	21.46%
AT2G33550(Trihelix)/colamp-AT2G33550-DAP-Seq(GSE60143)/Homer	TTTAAGGGCAYTTTT	1e-8	-1.980e+01	0.0000	4378.0	17.14%	3884.8	15.80%
COG1(C2C2dof)/col-COG1-DAP-Seq(GSE60143)/Homer	DAAAAAGTGA	1e-8	-1.952e+01	0.0000	3226.0	12.63%	2818.9	11.46%
GTL1(Trihelix)/colamp-GTL1-DAP-Seq(GSE60143)/Homer	WWTTTACCKY	1e-8	-1.943e+01	0.0000	2284.0	8.94%	1954.1	7.95%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-8	-1.914e+01	0.0000	6363.0	24.92%	5751.4	23.39%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-8	-1.905e+01	0.0000	1342.0	5.26%	1105.8	4.50%
ESE3(AP2EREBP)/col-ESE3-DAP-Seq(GSE60143)/Homer	GACGGTGG	1e-8	-1.903e+01	0.0000	3738.0	14.64%	3296.3	13.40%
DREB19(AP2EREBP)/colamp-DREB19-DAP-Seq(GSE60143)/Homer	AATGTCGGTK	1e-8	-1.886e+01	0.0000	987.0	3.87%	791.6	3.22%
ERF1(AP2EREBP)/colamp-ERF1-DAP-Seq(GSE60143)/Homer	GGCGGCTR	1e-8	-1.884e+01	0.0000	2320.0	9.09%	1991.8	8.10%
AT5G05550(Trihelix)/col-AT5G05550-DAP-Seq(GSE60143)/Homer	HDNHDTCKCCGGMGA	1e-7	-1.794e+01	0.0000	3443.0	13.48%	3032.7	12.33%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e-7	-1.784e+01	0.0000	4646.0	18.19%	4154.0	16.89%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-7	-1.783e+01	0.0000	3553.0	13.91%	3135.6	12.75%
HSF3(HSF)/colamp-HSF3-DAP-Seq(GSE60143)/Homer	NTTCTAGAAKCTTCT	1e-7	-1.783e+01	0.0000	1980.0	7.75%	1688.6	6.87%
ATY19(MYB)/col-ATY19-DAP-Seq(GSE60143)/Homer	YYCACCWACCAT	1e-7	-1.778e+01	0.0000	1568.0	6.14%	1315.2	5.35%
ERF73(AP2EREBP)/col-ERF73-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e-7	-1.766e+01	0.0000	2566.0	10.05%	2225.4	9.05%
TGA4(bZIP)/colamp-TGA4-DAP-Seq(GSE60143)/Homer	RTGACGTCAKCW	1e-7	-1.762e+01	0.0000	397.0	1.55%	287.7	1.17%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e-7	-1.761e+01	0.0000	658.0	2.58%	509.8	2.07%
SPL15(SBP)/colamp-SPL15-DAP-Seq(GSE60143)/Homer	WDWMMGTACADW	1e-7	-1.760e+01	0.0000	2402.0	9.41%	2075.7	8.44%
SeqBias: GA-repeat	GAGAGAGAGA	1e-7	-1.733e+01	0.0000	16112.0	63.10%	15111.3	61.45%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-7	-1.730e+01	0.0000	121.0	0.47%	69.0	0.28%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-7	-1.729e+01	0.0000	4052.0	15.87%	3604.8	14.66%
SeqBias: G/A bias	RRRRRRRRRR	1e-7	-1.714e+01	0.0000	25513.0	99.91%	24535.0	99.77%
dof43(C2C2dof)/colamp-dof43-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e-7	-1.713e+01	0.0000	3160.0	12.37%	2777.2	11.29%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-7	-1.710e+01	0.0000	406.0	1.59%	296.3	1.20%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e-7	-1.701e+01	0.0000	2420.0	9.48%	2096.6	8.53%
AtHB32(ZFHD)/col200-AtHB32-DAP-Seq(GSE60143)/Homer	CGAATTAT	1e-7	-1.690e+01	0.0000	2285.0	8.95%	1973.1	8.02%
AGL63(MADS)/col-AGL63-DAP-Seq(GSE60143)/Homer	TTCCAAWWWTGG	1e-7	-1.689e+01	0.0000	1635.0	6.40%	1381.3	5.62%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-7	-1.687e+01	0.0000	3177.0	12.44%	2795.5	11.37%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-7	-1.674e+01	0.0000	177.0	0.69%	111.1	0.45%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-7	-1.672e+01	0.0000	1852.0	7.25%	1579.7	6.42%
AT2G31460(REMB3)/col-AT2G31460-DAP-Seq(GSE60143)/Homer	WNWARWDGAAATGAT	1e-7	-1.660e+01	0.0000	672.0	2.63%	525.7	2.14%
MYB77(MYB)/col-MYB77-DAP-Seq(GSE60143)/Homer	NYAACBGYMC	1e-7	-1.653e+01	0.0000	2729.0	10.69%	2384.9	9.70%
ANAC070(NAC)/colamp-ANAC070-DAP-Seq(GSE60143)/Homer	CTTRHDNHNBAAGHW	1e-7	-1.634e+01	0.0000	1960.0	7.68%	1680.8	6.83%
AT2G40260(G2like)/colamp-AT2G40260-DAP-Seq(GSE60143)/Homer	WAAAYATTCTTT	1e-7	-1.634e+01	0.0000	3324.0	13.02%	2936.6	11.94%
ANAC004(NAC)/colamp-ANAC004-DAP-Seq(GSE60143)/Homer	WNCTTVYNNNRBAAG	1e-7	-1.625e+01	0.0000	652.0	2.55%	509.7	2.07%
AT3G51470(DBP)/col-AT3G51470-DAP-Seq(GSE60143)/Homer	TTWHGGTGCACC	1e-6	-1.566e+01	0.0000	3133.0	12.27%	2765.5	11.25%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-6	-1.562e+01	0.0000	230.0	0.90%	155.2	0.63%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-6	-1.559e+01	0.0000	475.0	1.86%	359.4	1.46%
ATHB13(Homeobox)/col-ATHB13-DAP-Seq(GSE60143)/Homer	CAATAATT	1e-6	-1.554e+01	0.0000	2050.0	8.03%	1768.3	7.19%
ATY13(MYB)/col-ATY13-DAP-Seq(GSE60143)/Homer	YYYAACYRHH	1e-6	-1.542e+01	0.0000	7435.0	29.12%	6809.7	27.69%
bHLH122(bHLH)/col100-bHLH122-DAP-Seq(GSE60143)/Homer	NDDCAASTTGHHNWW	1e-6	-1.523e+01	0.0000	1698.0	6.65%	1449.3	5.89%
AT1G76870(Trihelix)/col-AT1G76870-DAP-Seq(GSE60143)/Homer	AAAACCRGWW	1e-6	-1.491e+01	0.0000	819.0	3.21%	661.6	2.69%
AT2G38300(G2like)/col-AT2G38300-DAP-Seq(GSE60143)/Homer	ADRGAATGTT	1e-6	-1.489e+01	0.0000	2834.0	11.10%	2495.5	10.15%
NAC2(NAC)/colamp-NAC2-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e-6	-1.485e+01	0.0000	1190.0	4.66%	992.6	4.04%
AT3G10030(Trihelix)/colamp-AT3G10030-DAP-Seq(GSE60143)/Homer	GCCGTTAA	1e-6	-1.476e+01	0.0000	1136.0	4.45%	944.8	3.84%
SMB(NAC)/colamp-SMB-DAP-Seq(GSE60143)/Homer	CTTVNNNNDBAAGHW	1e-6	-1.476e+01	0.0000	1645.0	6.44%	1404.1	5.71%
bHLH130(bHLH)/col-bHLH130-DAP-Seq(GSE60143)/Homer	GCAACTTG	1e-6	-1.441e+01	0.0000	1496.0	5.86%	1271.2	5.17%
AT3G25990(Trihelix)/colamp-AT3G25990-DAP-Seq(GSE60143)/Homer	TTAACCATAG	1e-6	-1.440e+01	0.0000	1297.0	5.08%	1091.8	4.44%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-6	-1.432e+01	0.0000	130.0	0.51%	79.7	0.32%
AT5G60130(ABI3VP1)/col-AT5G60130-DAP-Seq(GSE60143)/Homer	WTTYTAAGVAAA	1e-6	-1.431e+01	0.0000	3902.0	15.28%	3494.7	14.21%
bHLH10(bHLH)/colamp-bHLH10-DAP-Seq(GSE60143)/Homer	YACCGACA	1e-6	-1.428e+01	0.0000	437.0	1.71%	331.8	1.35%
MYB70(MYB)/col-MYB70-DAP-Seq(GSE60143)/Homer	WTAACNGTTA	1e-6	-1.421e+01	0.0000	2891.0	11.32%	2554.2	10.39%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-6	-1.420e+01	0.0000	1228.0	4.81%	1030.6	4.19%
At1g64620(C2C2dof)/colamp-At1g64620-DAP-Seq(GSE60143)/Homer	CACTTTTT	1e-6	-1.416e+01	0.0000	3347.0	13.11%	2978.2	12.11%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-6	-1.410e+01	0.0000	505.0	1.98%	390.6	1.59%
ANAC071(NAC)/col-ANAC071-DAP-Seq(GSE60143)/Homer	DNCKTNDNNNHNAAG	1e-6	-1.403e+01	0.0000	1480.0	5.80%	1260.0	5.12%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e-6	-1.401e+01	0.0000	25500.0	99.86%	24521.9	99.71%
bHLH80(bHLH)/col-bHLH80-DAP-Seq(GSE60143)/Homer	NNNNDCAASTTGHNN	1e-6	-1.401e+01	0.0000	2022.0	7.92%	1754.1	7.13%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-6	-1.398e+01	0.0000	1650.0	6.46%	1414.9	5.75%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-6	-1.397e+01	0.0000	2086.0	8.17%	1813.2	7.37%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-6	-1.391e+01	0.0000	2092.0	8.19%	1819.8	7.40%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-5	-1.373e+01	0.0000	2842.0	11.13%	2513.6	10.22%
AT1G69570(C2C2dof)/col-AT1G69570-DAP-Seq(GSE60143)/Homer	WAAAAGTGHH	1e-5	-1.369e+01	0.0000	2616.0	10.24%	2304.6	9.37%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-5	-1.351e+01	0.0000	1079.0	4.23%	900.1	3.66%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e-5	-1.349e+01	0.0000	8902.0	34.86%	8231.6	33.47%
REM19(REM)/colamp-REM19-DAP-Seq(GSE60143)/Homer	AAAAAAAA	1e-5	-1.347e+01	0.0000	584.0	2.29%	461.2	1.88%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e-5	-1.345e+01	0.0000	4427.0	17.34%	3995.3	16.25%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-5	-1.316e+01	0.0000	1391.0	5.45%	1184.1	4.81%
DREB2(AP2EREBP)/col-DREB2-DAP-Seq(GSE60143)/Homer	TMACCGACATWA	1e-5	-1.289e+01	0.0000	738.0	2.89%	599.2	2.44%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-5	-1.289e+01	0.0000	1910.0	7.48%	1660.2	6.75%
AT3G60490(AP2EREBP)/colamp-AT3G60490-DAP-Seq(GSE60143)/Homer	NNRCCGACANNNNNN	1e-5	-1.276e+01	0.0000	425.0	1.66%	327.0	1.33%
TGA9(bZIP)/colamp-TGA9-DAP-Seq(GSE60143)/Homer	VTGACGTC	1e-5	-1.272e+01	0.0000	2001.0	7.84%	1745.7	7.10%
At3g12730(G2like)/colamp-At3g12730-DAP-Seq(GSE60143)/Homer	AAGATTCT	1e-5	-1.272e+01	0.0000	2993.0	11.72%	2663.2	10.83%
VND1(NAC)/col-VND1-DAP-Seq(GSE60143)/Homer	CTTRWDNHWYAAGYW	1e-5	-1.269e+01	0.0000	1360.0	5.33%	1159.6	4.72%
MYB81(MYB)/col-MYB81-DAP-Seq(GSE60143)/Homer	NWAACSGWTWNN	1e-5	-1.267e+01	0.0000	2857.0	11.19%	2537.5	10.32%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e-5	-1.266e+01	0.0000	252.0	0.99%	180.3	0.73%
RRTF1(AP2EREBP)/colamp-RRTF1-DAP-Seq(GSE60143)/Homer	CCGCCGCHATTT	1e-5	-1.263e+01	0.0000	487.0	1.91%	380.6	1.55%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-5	-1.259e+01	0.0000	1165.0	4.56%	983.8	4.00%
VND2(NAC)/col-VND2-DAP-Seq(GSE60143)/Homer	DNCKTNNNNNNNAAG	1e-5	-1.241e+01	0.0000	1632.0	6.39%	1410.0	5.73%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-5	-1.234e+01	0.0000	127.0	0.50%	80.1	0.33%
At1g22810(AP2EREBP)/colamp-At1g22810-DAP-Seq(GSE60143)/Homer	BCACCGACANNN	1e-5	-1.228e+01	0.0000	747.0	2.93%	610.1	2.48%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-5	-1.214e+01	0.0000	231.0	0.90%	164.0	0.67%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-5	-1.201e+01	0.0000	1962.0	7.68%	1715.1	6.97%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-5	-1.201e+01	0.0000	1215.0	4.76%	1032.5	4.20%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-5	-1.200e+01	0.0000	3489.0	13.66%	3133.2	12.74%
WRKY50(WRKY)/col-WRKY50-DAP-Seq(GSE60143)/Homer	NNTTGACTWNNGNNN	1e-5	-1.196e+01	0.0000	1697.0	6.65%	1472.5	5.99%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-5	-1.189e+01	0.0000	369.0	1.45%	281.9	1.15%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-5	-1.186e+01	0.0000	4002.0	15.67%	3615.3	14.70%
NST1(NAC)/colamp-NST1-DAP-Seq(GSE60143)/Homer	WRCTTRWWNWWYAAG	1e-5	-1.185e+01	0.0000	1494.0	5.85%	1287.8	5.24%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-5	-1.177e+01	0.0000	358.0	1.40%	272.3	1.11%
ANAC045(NAC)/col-ANAC045-DAP-Seq(GSE60143)/Homer	DNCKTVNNNNNNAMG	1e-5	-1.169e+01	0.0000	4297.0	16.83%	3894.3	15.84%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-5	-1.168e+01	0.0000	256.0	1.00%	186.7	0.76%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-5	-1.168e+01	0.0000	1556.0	6.09%	1345.4	5.47%
TGA2(bZIP)/colamp-TGA2-DAP-Seq(GSE60143)/Homer	ACGTCAYCHH	1e-5	-1.168e+01	0.0000	918.0	3.59%	766.9	3.12%
ANAC005(NAC)/col-ANAC005-DAP-Seq(GSE60143)/Homer	WVCTTVTWNHABAAG	1e-5	-1.167e+01	0.0000	928.0	3.63%	775.5	3.15%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-5	-1.165e+01	0.0000	722.0	2.83%	591.5	2.41%
ANAC053(NAC)/colamp-ANAC053-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e-5	-1.160e+01	0.0000	952.0	3.73%	797.8	3.24%
At3g09600(MYBrelated)/colamp-At3g09600-DAP-Seq(GSE60143)/Homer	AAAATATCTT	1e-5	-1.156e+01	0.0000	828.0	3.24%	686.8	2.79%
SPL1(SBP)/colamp-SPL1-DAP-Seq(GSE60143)/Homer	HYGTACDTWH	1e-4	-1.144e+01	0.0000	3039.0	11.90%	2719.9	11.06%
TINY(AP2EREBP)/col-TINY-DAP-Seq(GSE60143)/Homer	NNCACCGACA	1e-4	-1.142e+01	0.0000	388.0	1.52%	299.5	1.22%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-4	-1.136e+01	0.0000	848.0	3.32%	705.2	2.87%
LOB(LOBAS2)/col-LOB-DAP-Seq(GSE60143)/Homer	CGCCGKAWWTTHCGS	1e-4	-1.131e+01	0.0000	571.0	2.24%	459.2	1.87%
DAG2(C2C2dof)/col-DAG2-DAP-Seq(GSE60143)/Homer	WWTTHACTTTTT	1e-4	-1.124e+01	0.0000	3609.0	14.13%	3254.6	13.23%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-4	-1.100e+01	0.0001	3233.0	12.66%	2905.3	11.81%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e-4	-1.095e+01	0.0001	38.0	0.15%	17.6	0.07%
SPL9(SBP)/colamp-SPL9-DAP-Seq(GSE60143)/Homer	BTGTACTT	1e-4	-1.093e+01	0.0001	4006.0	15.69%	3630.1	14.76%
WRKY20(WRKY)/col-WRKY20-DAP-Seq(GSE60143)/Homer	CKTTGACYWD	1e-4	-1.072e+01	0.0001	1168.0	4.57%	998.2	4.06%
AT1G49560(G2like)/colamp-AT1G49560-DAP-Seq(GSE60143)/Homer	GAWTCTNWDA	1e-4	-1.063e+01	0.0001	2754.0	10.78%	2462.9	10.01%
LBD13(LOBAS2)/colamp-LBD13-DAP-Seq(GSE60143)/Homer	KCCGTNWTTTBCGGC	1e-4	-1.044e+01	0.0001	2039.0	7.98%	1800.5	7.32%
TGA1(bZIP)/colamp-TGA1-DAP-Seq(GSE60143)/Homer	TGACGTCAKC	1e-4	-1.027e+01	0.0001	561.0	2.20%	455.3	1.85%
MYB33(MYB)/col-MYB33-DAP-Seq(GSE60143)/Homer	DDTYNGTTAN	1e-4	-1.025e+01	0.0001	3462.0	13.56%	3128.4	12.72%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e-4	-1.018e+01	0.0001	197.0	0.77%	141.2	0.57%
CEJ1(AP2EREBP)/col-CEJ1-DAP-Seq(GSE60143)/Homer	WWTGTCGGTG	1e-4	-1.016e+01	0.0001	1745.0	6.83%	1531.3	6.23%
AT1G12630(AP2EREBP)/colamp-AT1G12630-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e-4	-1.010e+01	0.0001	862.0	3.38%	725.3	2.95%
ANAC011(NAC)/col-ANAC011-DAP-Seq(GSE60143)/Homer	TDCTTGYRNNDCAAG	1e-4	-1.003e+01	0.0001	671.0	2.63%	554.8	2.26%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-4	-9.952e+00	0.0002	3981.0	15.59%	3619.3	14.72%
AT4G37180(G2like)/col-AT4G37180-DAP-Seq(GSE60143)/Homer	AGAATCTTNN	1e-4	-9.932e+00	0.0002	2557.0	10.01%	2286.7	9.30%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-4	-9.884e+00	0.0002	418.0	1.64%	331.5	1.35%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-4	-9.847e+00	0.0002	5000.0	19.58%	4581.8	18.63%
NTM2(NAC)/col-NTM2-DAP-Seq(GSE60143)/Homer	CTTRTNNNAYAAGBH	1e-4	-9.826e+00	0.0002	1006.0	3.94%	857.3	3.49%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e-4	-9.728e+00	0.0002	1135.0	4.44%	975.2	3.97%
ANAC062(NAC)/colamp-ANAC062-DAP-Seq(GSE60143)/Homer	TACTTANTNWNYAAG	1e-4	-9.547e+00	0.0002	677.0	2.65%	562.9	2.29%
MYB40(MYB)/col-MYB40-DAP-Seq(GSE60143)/Homer	TGGTAGGTRARA	1e-4	-9.525e+00	0.0002	766.0	3.00%	642.1	2.61%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-4	-9.494e+00	0.0002	1403.0	5.49%	1222.9	4.97%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-4	-9.461e+00	0.0002	324.0	1.27%	251.4	1.02%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e-4	-9.288e+00	0.0003	153.0	0.60%	107.2	0.44%
At4g38000(C2C2dof)/col-At4g38000-DAP-Seq(GSE60143)/Homer	WWWTWACTTTTT	1e-4	-9.250e+00	0.0003	2358.0	9.23%	2108.3	8.57%
At1g76110(ARID)/colamp-At1g76110-DAP-Seq(GSE60143)/Homer	ATTTAATG	1e-3	-9.104e+00	0.0003	1224.0	4.79%	1061.3	4.32%
LBD2(LOBAS2)/colamp-LBD2-DAP-Seq(GSE60143)/Homer	TCCGAWTTTTTCGGN	1e-3	-9.080e+00	0.0003	498.0	1.95%	405.5	1.65%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-3	-9.017e+00	0.0004	449.0	1.76%	362.8	1.48%
WIP5(C2H2)/colamp-WIP5-DAP-Seq(GSE60143)/Homer	TDTTCTCMAGGT	1e-3	-8.938e+00	0.0004	2831.0	11.09%	2553.1	10.38%
At4g16750(AP2EREBP)/col-At4g16750-DAP-Seq(GSE60143)/Homer	HACCGACAHA	1e-3	-8.761e+00	0.0005	1161.0	4.55%	1006.1	4.09%
CBF1(AP2EREBP)/colamp-CBF1-DAP-Seq(GSE60143)/Homer	YRCCGACATN	1e-3	-8.736e+00	0.0005	1128.0	4.42%	976.2	3.97%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-3	-8.607e+00	0.0005	4809.0	18.83%	4419.8	17.97%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-3	-8.525e+00	0.0006	368.0	1.44%	294.0	1.20%
bZIP50(bZIP)/colamp-bZIP50-DAP-Seq(GSE60143)/Homer	GATGACGTCA	1e-3	-8.516e+00	0.0006	1574.0	6.16%	1388.0	5.64%
MYB10(MYB)/col-MYB10-DAP-Seq(GSE60143)/Homer	YCCACCTACCHH	1e-3	-8.330e+00	0.0007	845.0	3.31%	721.7	2.93%
ANAC103(NAC)/col-ANAC103-DAP-Seq(GSE60143)/Homer	AACTTGNWNWNCAAG	1e-3	-8.273e+00	0.0008	681.0	2.67%	573.7	2.33%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-3	-8.159e+00	0.0008	2651.0	10.38%	2394.0	9.73%
WRKY75(WRKY)/col-WRKY75-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e-3	-8.151e+00	0.0009	1461.0	5.72%	1287.4	5.23%
VND3(NAC)/colamp-VND3-DAP-Seq(GSE60143)/Homer	TRCTTGWDNHWCAAG	1e-3	-8.091e+00	0.0009	1153.0	4.52%	1004.0	4.08%
VND6(NAC)/col-VND6-DAP-Seq(GSE60143)/Homer	DCTTNHTTTTYAMGY	1e-3	-8.080e+00	0.0009	1991.0	7.80%	1779.6	7.24%
AT1G77200(AP2EREBP)/colamp-AT1G77200-DAP-Seq(GSE60143)/Homer	ACCGACAHWD	1e-3	-7.967e+00	0.0010	1227.0	4.80%	1073.5	4.37%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-3	-7.966e+00	0.0010	1644.0	6.44%	1458.8	5.93%
MYB3R4(MYB)/col-MYB3R4-DAP-Seq(GSE60143)/Homer	AWWTAACCGTTR	1e-3	-7.904e+00	0.0011	249.0	0.98%	192.9	0.78%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e-3	-7.854e+00	0.0011	13.0	0.05%	4.8	0.02%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-3	-7.835e+00	0.0011	1648.0	6.45%	1463.7	5.95%
AtGRF6(GRF)/col-AtGRF6-DAP-Seq(GSE60143)/Homer	NTGTCAGADNNNNNN	1e-3	-7.807e+00	0.0012	2454.0	9.61%	2214.1	9.00%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-3	-7.785e+00	0.0012	620.0	2.43%	521.1	2.12%
ANAC096(NAC)/colamp-ANAC096-DAP-Seq(GSE60143)/Homer	TACTTGWNNNWCAAG	1e-3	-7.727e+00	0.0013	1153.0	4.52%	1007.1	4.10%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e-3	-7.656e+00	0.0013	2655.0	10.40%	2404.6	9.78%
AT1G19040(NAC)/col-AT1G19040-DAP-Seq(GSE60143)/Homer	CTTGNDNHNCAAGYW	1e-3	-7.618e+00	0.0014	242.0	0.95%	187.9	0.76%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-3	-7.577e+00	0.0014	94.0	0.37%	63.1	0.26%
At3g24120(G2like)/col-At3g24120-DAP-Seq(GSE60143)/Homer	NWWAGMATMW	1e-3	-7.512e+00	0.0015	7175.0	28.10%	6685.4	27.19%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e-3	-7.496e+00	0.0016	18.0	0.07%	7.1	0.03%
SPL11(SBP)/col100-SPL11-DAP-Seq(GSE60143)/Homer	YTGTACTTBH	1e-3	-7.412e+00	0.0017	1087.0	4.26%	949.8	3.86%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-3	-7.399e+00	0.0017	2117.0	8.29%	1904.3	7.74%
At1g74840(MYBrelated)/col100-At1g74840-DAP-Seq(GSE60143)/Homer	YHTTATCCAWWT	1e-3	-7.328e+00	0.0018	1247.0	4.88%	1097.5	4.46%
WRKY18(WRKY)/col-WRKY18-DAP-Seq(GSE60143)/Homer	NNNTTGACYWNNNNN	1e-3	-7.259e+00	0.0020	2754.0	10.78%	2502.3	10.18%
ERF9(AP2EREBP)/colamp-ERF9-DAP-Seq(GSE60143)/Homer	AWATGGCGGCGG	1e-3	-7.227e+00	0.0020	866.0	3.39%	748.9	3.05%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-3	-7.110e+00	0.0023	219.0	0.86%	169.4	0.69%
VND4(NAC)/colamp-VND4-DAP-Seq(GSE60143)/Homer	WRCTTGWANWWCAAG	1e-3	-7.109e+00	0.0023	1208.0	4.73%	1063.9	4.33%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e-3	-7.068e+00	0.0023	281.0	1.10%	223.8	0.91%
ANAC058(NAC)/col-ANAC058-DAP-Seq(GSE60143)/Homer	TWCTTGTDNNACAAG	1e-3	-7.038e+00	0.0024	954.0	3.74%	830.0	3.38%
NAP(NAC)/col-NAP-DAP-Seq(GSE60143)/Homer	ARGTTACGTRTN	1e-3	-7.016e+00	0.0024	1364.0	5.34%	1208.2	4.91%
CDM1(C3H)/colamp-CDM1-DAP-Seq(GSE60143)/Homer	CCGAWAWTWTCGGAN	1e-3	-7.005e+00	0.0025	147.0	0.58%	108.5	0.44%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-3	-6.991e+00	0.0025	1196.0	4.68%	1053.8	4.28%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-3	-6.955e+00	0.0026	261.0	1.02%	206.1	0.84%
ANAC050(NAC)/colamp-ANAC050-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAAG	1e-3	-6.939e+00	0.0026	988.0	3.87%	862.3	3.51%
TSO1(CPP)/col-TSO1-DAP-Seq(GSE60143)/Homer	RAATTTRAAW	1e-2	-6.845e+00	0.0029	305.0	1.19%	245.3	1.00%
ATHB40(HB)/col-ATHB40-DAP-Seq(GSE60143)/Homer	HCAATWATTG	1e-2	-6.832e+00	0.0029	1443.0	5.65%	1283.7	5.22%
At1g36060(AP2EREBP)/colamp-At1g36060-DAP-Seq(GSE60143)/Homer	NNWWKGTCGGTG	1e-2	-6.814e+00	0.0029	1178.0	4.61%	1038.5	4.22%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e-2	-6.789e+00	0.0030	50.0	0.20%	30.5	0.12%
NAM(NAC)/col-NAM-DAP-Seq(GSE60143)/Homer	RGTTRCGTRW	1e-2	-6.768e+00	0.0031	1868.0	7.32%	1679.1	6.83%
ANAC028(NAC)/col-ANAC028-DAP-Seq(GSE60143)/Homer	WRCTTGNNNNNCAAG	1e-2	-6.747e+00	0.0031	1265.0	4.95%	1119.5	4.55%
ANAC083(NAC)/col-ANAC083-DAP-Seq(GSE60143)/Homer	CKTRWNNNWYAMGTA	1e-2	-6.613e+00	0.0035	1176.0	4.61%	1038.7	4.22%
MYB3R1(MYB)/col-MYB3R1-DAP-Seq(GSE60143)/Homer	WWDTDACCGTTR	1e-2	-6.609e+00	0.0036	422.0	1.65%	350.3	1.42%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-2	-6.528e+00	0.0038	1702.0	6.67%	1528.0	6.21%
AT1G76880(Trihelix)/col-AT1G76880-DAP-Seq(GSE60143)/Homer	ACGGTAAAAW	1e-2	-6.520e+00	0.0039	653.0	2.56%	559.6	2.28%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-2	-6.501e+00	0.0039	36.0	0.14%	20.5	0.08%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-2	-6.494e+00	0.0039	590.0	2.31%	502.7	2.04%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-2	-6.468e+00	0.0040	261.0	1.02%	208.1	0.85%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e-2	-6.443e+00	0.0041	715.0	2.80%	616.5	2.51%
WRKY28(WRKY)/col-WRKY28-DAP-Seq(GSE60143)/Homer	BGTTGACTWH	1e-2	-6.367e+00	0.0044	2001.0	7.84%	1808.8	7.36%
LEP(AP2EREBP)/col-LEP-DAP-Seq(GSE60143)/Homer	CDCCGCCGTC	1e-2	-6.353e+00	0.0045	1077.0	4.22%	949.8	3.86%
ANAC075(NAC)/col-ANAC075-DAP-Seq(GSE60143)/Homer	CTTSWWNWWSAAGYT	1e-2	-6.329e+00	0.0046	591.0	2.31%	504.1	2.05%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-2	-6.317e+00	0.0046	4701.0	18.41%	4355.7	17.71%
At4g01280(MYBrelated)/colamp-At4g01280-DAP-Seq(GSE60143)/Homer	AAATATCT	1e-2	-6.275e+00	0.0048	1009.0	3.95%	887.1	3.61%
WRKY15(WRKY)/col-WRKY15-DAP-Seq(GSE60143)/Homer	VGTTGACTWW	1e-2	-6.236e+00	0.0050	1517.0	5.94%	1358.9	5.53%
ZIM(C2C2gata)/col-ZIM-DAP-Seq(GSE60143)/Homer	ATCSRACGGTYRAGA	1e-2	-6.217e+00	0.0051	15.0	0.06%	6.6	0.03%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-2	-6.192e+00	0.0052	1257.0	4.92%	1117.1	4.54%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-2	-6.178e+00	0.0052	602.0	2.36%	515.8	2.10%
TGA6(bZIP)/colamp-TGA6-DAP-Seq(GSE60143)/Homer	TGACGTCABC	1e-2	-6.117e+00	0.0056	851.0	3.33%	743.4	3.02%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-2	-6.111e+00	0.0056	732.0	2.87%	634.1	2.58%
IDD5(C2H2)/colamp-IDD5-DAP-Seq(GSE60143)/Homer	TTTTGTCTTTTTBTK	1e-2	-6.110e+00	0.0056	1067.0	4.18%	942.4	3.83%
NTM1(NAC)/col-NTM1-DAP-Seq(GSE60143)/Homer	ACTTRTARAASAAGT	1e-2	-6.070e+00	0.0058	943.0	3.69%	828.6	3.37%
bHLH28(bHLH)/col-bHLH28-DAP-Seq(GSE60143)/Homer	NHHTGTACGGAH	1e-2	-6.050e+00	0.0059	302.0	1.18%	246.9	1.00%
AT5G45580(G2like)/colamp-AT5G45580-DAP-Seq(GSE60143)/Homer	ADRGAATCTH	1e-2	-6.049e+00	0.0059	3241.0	12.69%	2978.3	12.11%
SND3(NAC)/col-SND3-DAP-Seq(GSE60143)/Homer	CTTNHNNNDNAAGNH	1e-2	-6.039e+00	0.0059	1237.0	4.84%	1100.1	4.47%
At5g52660(MYBrelated)/colamp-At5g52660-DAP-Seq(GSE60143)/Homer	HAAAAATATCTW	1e-2	-6.030e+00	0.0059	763.0	2.99%	663.7	2.70%
MYB65(MYB)/colamp-MYB65-DAP-Seq(GSE60143)/Homer	RACNGTTA	1e-2	-5.975e+00	0.0063	2175.0	8.52%	1976.1	8.04%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e-2	-5.948e+00	0.0064	449.0	1.76%	378.2	1.54%
ARF16(ARF)/col-ARF16-DAP-Seq(GSE60143)/Homer	ATTTTACGAT	1e-2	-5.911e+00	0.0066	200.0	0.78%	157.9	0.64%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e-2	-5.855e+00	0.0070	28.0	0.11%	16.0	0.06%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-2	-5.852e+00	0.0070	5789.0	22.67%	5398.3	21.95%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-2	-5.805e+00	0.0073	1398.0	5.47%	1253.0	5.10%
WRKY55(WRKY)/col-WRKY55-DAP-Seq(GSE60143)/Homer	NCGTTGACTT	1e-2	-5.711e+00	0.0080	1803.0	7.06%	1631.5	6.63%
At1g19210(AP2EREBP)/colamp-At1g19210-DAP-Seq(GSE60143)/Homer	HCACCGACCAHN	1e-2	-5.656e+00	0.0085	2564.0	10.04%	2346.3	9.54%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-2	-5.607e+00	0.0089	855.0	3.35%	751.3	3.06%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-2	-5.580e+00	0.0091	3217.0	12.60%	2964.0	12.05%
MYB56(MYB)/colamp-MYB56-DAP-Seq(GSE60143)/Homer	HTAACGRMHY	1e-2	-5.556e+00	0.0093	1468.0	5.75%	1320.9	5.37%
ATHB6(Homeobox)/col-ATHB6-DAP-Seq(GSE60143)/Homer	AATGATTG	1e-2	-5.505e+00	0.0097	2133.0	8.35%	1943.1	7.90%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-2	-5.483e+00	0.0099	636.0	2.49%	551.8	2.24%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-2	-5.480e+00	0.0099	613.0	2.40%	530.5	2.16%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-2	-5.451e+00	0.0102	604.0	2.37%	522.8	2.13%
EMB1789(C3H)/col-EMB1789-DAP-Seq(GSE60143)/Homer	TWTTTACCGYND	1e-2	-5.424e+00	0.0105	713.0	2.79%	622.2	2.53%
At4g31060(AP2EREBP)/colamp-At4g31060-DAP-Seq(GSE60143)/Homer	CACCGACAAW	1e-2	-5.368e+00	0.0110	588.0	2.30%	509.0	2.07%
WRKY6(WRKY)/colamp-WRKY6-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWD	1e-2	-5.318e+00	0.0116	1288.0	5.04%	1155.2	4.70%
ANAC057(NAC)/colamp-ANAC057-DAP-Seq(GSE60143)/Homer	DVCKTGNNNNNCAMG	1e-2	-5.304e+00	0.0117	1247.0	4.88%	1117.9	4.55%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-2	-5.301e+00	0.0117	1666.0	6.52%	1509.0	6.14%
WRKY33(WRKY)/col-WRKY33-DAP-Seq(GSE60143)/Homer	CGTTGACYAW	1e-2	-5.224e+00	0.0126	1188.0	4.65%	1063.3	4.32%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-2	-5.210e+00	0.0127	3747.0	14.67%	3471.8	14.12%
CBF2(AP2EREBP)/colamp-CBF2-DAP-Seq(GSE60143)/Homer	YBRCCGACATNNNNN	1e-2	-5.202e+00	0.0128	650.0	2.55%	566.5	2.30%
MYB94(MYB)/col-MYB94-DAP-Seq(GSE60143)/Homer	WGGTRGTTGGKA	1e-2	-5.200e+00	0.0128	956.0	3.74%	848.4	3.45%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-2	-5.174e+00	0.0131	1000.0	3.92%	889.1	3.62%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e-2	-5.132e+00	0.0136	177.0	0.69%	141.0	0.57%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-2	-5.104e+00	0.0140	93.0	0.36%	68.7	0.28%
At1g77640(AP2EREBP)/col-At1g77640-DAP-Seq(GSE60143)/Homer	TGTCGGTGGA	1e-2	-5.024e+00	0.0151	394.0	1.54%	334.6	1.36%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-2	-5.015e+00	0.0152	492.0	1.93%	424.0	1.72%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e-2	-5.012e+00	0.0152	1460.0	5.72%	1319.6	5.37%
MYB62(MYB)/colamp-MYB62-DAP-Seq(GSE60143)/Homer	NTACCTAACT	1e-2	-5.010e+00	0.0152	2741.0	10.73%	2523.8	10.26%
ANAC013(NAC)/col-ANAC013-DAP-Seq(GSE60143)/Homer	CTTGNNNNNCAAGNA	1e-2	-4.984e+00	0.0156	785.0	3.07%	692.7	2.82%
LMI1(HB)/colamp-LMI1-DAP-Seq(GSE60143)/Homer	AATTATTG	1e-2	-4.970e+00	0.0158	1302.0	5.10%	1172.4	4.77%
ANAC016(NAC)/col-ANAC016-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAMG	1e-2	-4.969e+00	0.0158	1468.0	5.75%	1328.0	5.40%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-2	-4.898e+00	0.0169	413.0	1.62%	352.3	1.43%
WRKY29(WRKY)/colamp-WRKY29-DAP-Seq(GSE60143)/Homer	MGTTGACTTT	1e-2	-4.879e+00	0.0171	1563.0	6.12%	1417.5	5.76%
RVE1(MYBrelated)/col-RVE1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e-2	-4.847e+00	0.0177	949.0	3.72%	845.7	3.44%
TBP3(MYBrelated)/col-TBP3-DAP-Seq(GSE60143)/Homer	VYTAGGGCAN	1e-2	-4.840e+00	0.0177	1571.0	6.15%	1425.3	5.80%
AT3G10113(MYBrelated)/col-AT3G10113-DAP-Seq(GSE60143)/Homer	WNAAATATCWWN	1e-2	-4.824e+00	0.0180	752.0	2.94%	663.4	2.70%
WRKY25(WRKY)/colamp-WRKY25-DAP-Seq(GSE60143)/Homer	NNNNHRGTCAAMNNN	1e-2	-4.816e+00	0.0181	1703.0	6.67%	1549.5	6.30%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e-2	-4.806e+00	0.0182	3022.0	11.83%	2792.9	11.36%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e-2	-4.785e+00	0.0186	2209.0	8.65%	2025.7	8.24%
SeqBias: CG-repeat	CGCGCGCGCG	1e-2	-4.757e+00	0.0190	5812.0	22.76%	5444.7	22.14%
GATA15(C2C2gata)/col-GATA15-DAP-Seq(GSE60143)/Homer	KATGATCA	1e-2	-4.756e+00	0.0190	2251.0	8.82%	2065.5	8.40%
At2g44940(AP2EREBP)/colamp-At2g44940-DAP-Seq(GSE60143)/Homer	NYACCGACAHNNNNN	1e-2	-4.713e+00	0.0198	272.0	1.07%	226.9	0.92%
At5g08750(C3H)/col-At5g08750-DAP-Seq(GSE60143)/Homer	NWDTTGCGGCTR	1e-2	-4.707e+00	0.0199	886.0	3.47%	788.6	3.21%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-2	-4.690e+00	0.0202	192.0	0.75%	155.7	0.63%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-2	-4.669e+00	0.0206	1074.0	4.21%	963.8	3.92%
ANAC042(NAC)/col-ANAC042-DAP-Seq(GSE60143)/Homer	CGTNDHNDHNACGKY	1e-2	-4.649e+00	0.0209	1453.0	5.69%	1318.0	5.36%
At1g13300(G2like)/col-At1g13300-DAP-Seq(GSE60143)/Homer	GAATCTWAGATTCYN	1e-2	-4.642e+00	0.0210	26.0	0.10%	15.7	0.06%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-2	-4.637e+00	0.0211	1036.0	4.06%	928.9	3.78%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-2	-4.636e+00	0.0211	1550.0	6.07%	1408.9	5.73%
At1g25550(G2like)/colamp-At1g25550-DAP-Seq(GSE60143)/Homer	NAGATTCY	1e-1	-4.605e+00	0.0216	2275.0	8.91%	2090.2	8.50%
DDF1(AP2EREBP)/col-DDF1-DAP-Seq(GSE60143)/Homer	GCCGACAT	1e-1	-4.573e+00	0.0223	590.0	2.31%	516.6	2.10%
IDD4(C2H2)/col-IDD4-DAP-Seq(GSE60143)/Homer	TTTGTCTTTWTB	1e-1	-4.521e+00	0.0234	1385.0	5.42%	1255.6	5.11%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e-1	-4.507e+00	0.0237	55.0	0.22%	38.4	0.16%
MYB83(MYB)/colamp-MYB83-DAP-Seq(GSE60143)/Homer	CACCAACCWH	1e-1	-4.439e+00	0.0253	3474.0	13.60%	3227.7	13.13%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-1	-4.389e+00	0.0266	1396.0	5.47%	1267.6	5.15%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-1	-4.382e+00	0.0267	674.0	2.64%	596.0	2.42%
PLT1(AP2EREBP)/colamp-PLT1-DAP-Seq(GSE60143)/Homer	GCACGAWTYCCGAGG	1e-1	-4.294e+00	0.0291	132.0	0.52%	104.2	0.42%
SVP(MADS)/col-SVP-DAP-Seq(GSE60143)/Homer	ANTTWCCHAATTTGG	1e-1	-4.293e+00	0.0291	1004.0	3.93%	902.1	3.67%
ERF38(AP2EREBP)/col-ERF38-DAP-Seq(GSE60143)/Homer	CACCGACA	1e-1	-4.279e+00	0.0294	726.0	2.84%	644.2	2.62%
LCL1(MYBrelated)/colamp-LCL1-DAP-Seq(GSE60143)/Homer	NAAAATATCTWHWWN	1e-1	-4.227e+00	0.0309	249.0	0.98%	208.6	0.85%
CELF2(RRM)/JSL1-CELF2-CLIP-Seq(GSE71264)/Homer	RGTGTCAG	1e-1	-4.214e+00	0.0312	748.0	2.93%	666.0	2.71%
At3g04030(G2like)/col-At3g04030-DAP-Seq(GSE60143)/Homer	DRGAATCT	1e-1	-4.209e+00	0.0313	1916.0	7.50%	1758.8	7.15%
MYB96(MYB)/colamp-MYB96-DAP-Seq(GSE60143)/Homer	WGGTRGTTGG	1e-1	-4.190e+00	0.0318	1921.0	7.52%	1763.3	7.17%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-1	-4.184e+00	0.0319	177.0	0.69%	144.8	0.59%
AT3G16280(AP2EREBP)/colamp-AT3G16280-DAP-Seq(GSE60143)/Homer	HCACCGACAHHDHHN	1e-1	-4.183e+00	0.0319	470.0	1.84%	409.7	1.67%
ANAC020(NAC)/col-ANAC020-DAP-Seq(GSE60143)/Homer	DVCKTGHNNNDCAAG	1e-1	-4.148e+00	0.0330	1073.0	4.20%	969.0	3.94%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-1	-4.137e+00	0.0332	731.0	2.86%	650.9	2.65%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-1	-4.125e+00	0.0336	1199.0	4.70%	1086.2	4.42%
CAMTA5(CAMTA)/col-CAMTA5-DAP-Seq(GSE60143)/Homer	ACGCGTTTTANACRC	1e-1	-4.082e+00	0.0350	420.0	1.64%	364.1	1.48%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-1	-4.056e+00	0.0358	1633.0	6.39%	1494.9	6.08%
MYB98(MYB)/col-MYB98-DAP-Seq(GSE60143)/Homer	NWDCCGTTAC	1e-1	-4.023e+00	0.0369	473.0	1.85%	413.1	1.68%
CUC3(NAC)/col-CUC3-DAP-Seq(GSE60143)/Homer	TRCKTGWNNNACAMG	1e-1	-3.969e+00	0.0389	528.0	2.07%	464.1	1.89%
MYB119(MYB)/colamp-MYB119-DAP-Seq(GSE60143)/Homer	YRACCGTTACDD	1e-1	-3.916e+00	0.0409	459.0	1.80%	401.4	1.63%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-1	-3.906e+00	0.0412	4751.0	18.61%	4453.1	18.11%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-1	-3.888e+00	0.0419	696.0	2.73%	620.4	2.52%
KAN2(G2like)/colamp-KAN2-DAP-Seq(GSE60143)/Homer	ATATTCTY	1e-1	-3.871e+00	0.0425	2559.0	10.02%	2371.5	9.64%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-1	-3.849e+00	0.0434	417.0	1.63%	363.4	1.48%
Rap210(AP2EREBP)/col-Rap210-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e-1	-3.838e+00	0.0437	918.0	3.59%	827.5	3.36%
SND2(NAC)/colamp-SND2-DAP-Seq(GSE60143)/Homer	CTTVWNNNWBAAGNW	1e-1	-3.810e+00	0.0449	908.0	3.56%	818.9	3.33%
CUC2(NAC)/colamp-CUC2-DAP-Seq(GSE60143)/Homer	TRCKTGTNNNWCAMG	1e-1	-3.772e+00	0.0465	524.0	2.05%	462.2	1.88%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-1	-3.758e+00	0.0471	343.0	1.34%	296.1	1.20%
ATHB53(HB)/col-ATHB53-DAP-Seq(GSE60143)/Homer	CAATAATT	1e-1	-3.746e+00	0.0475	919.0	3.60%	829.9	3.37%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-1	-3.728e+00	0.0483	542.0	2.12%	480.0	1.95%
HSFA6B(HSF)/colamp-HSFA6B-DAP-Seq(GSE60143)/Homer	NTTCTAGAANHTTCT	1e-1	-3.705e+00	0.0493	1033.0	4.05%	936.8	3.81%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-1	-3.678e+00	0.0505	81.0	0.32%	62.5	0.25%
M1BP(Zf)/S2R+-M1BP-ChIP-Seq(GSE49842)/Homer	CAGTGTGACCGT	1e-1	-3.669e+00	0.0509	497.0	1.95%	438.9	1.78%
Replumless(BLH)/Arabidopsis-RPL.GFP-ChIP-Seq(GSE78727)/Homer	HGTCWHATCA	1e-1	-3.657e+00	0.0514	1969.0	7.71%	1817.3	7.39%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-1	-3.651e+00	0.0516	2563.0	10.04%	2379.1	9.67%
AT4G27900(C2C2COlike)/col-AT4G27900-DAP-Seq(GSE60143)/Homer	TCTCVACCGTTSATT	1e-1	-3.639e+00	0.0521	9.0	0.04%	4.4	0.02%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-1	-3.631e+00	0.0524	129.0	0.51%	104.5	0.43%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-1	-3.619e+00	0.0529	2017.0	7.90%	1863.0	7.58%
EPR1(MYBrelated)/colamp-EPR1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e-1	-3.593e+00	0.0541	626.0	2.45%	558.7	2.27%
LHY1(MYBrelated)/col-LHY1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e-1	-3.593e+00	0.0541	626.0	2.45%	558.7	2.27%
TRP2(MYBrelated)/colamp-TRP2-DAP-Seq(GSE60143)/Homer	TAAACCCT	1e-1	-3.592e+00	0.0541	345.0	1.35%	299.5	1.22%
At1g19000(MYBrelated)/colamp-At1g19000-DAP-Seq(GSE60143)/Homer	WWTGGATAADDT	1e-1	-3.573e+00	0.0549	1384.0	5.42%	1267.4	5.15%
At2g01060(G2like)/colamp-At2g01060-DAP-Seq(GSE60143)/Homer	AGATKCBNWW	1e-1	-3.573e+00	0.0549	6520.0	25.53%	6151.4	25.01%
HDG1(Homeobox)/col100-HDG1-DAP-Seq(GSE60143)/Homer	DDYAATTAATGH	1e-1	-3.570e+00	0.0549	997.0	3.90%	904.6	3.68%
ANAC046(NAC)/colamp-ANAC046-DAP-Seq(GSE60143)/Homer	ACACGYWAYC	1e-1	-3.549e+00	0.0559	3390.0	13.28%	3166.8	12.88%
WUS1(Homeobox)/colamp-WUS1-DAP-Seq(GSE60143)/Homer	CAWTCATTCA	1e-1	-3.486e+00	0.0595	712.0	2.79%	639.6	2.60%
WRKY24(WRKY)/colamp-WRKY24-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e-1	-3.475e+00	0.0600	1258.0	4.93%	1150.5	4.68%
SPL5(SBP)/colamp-SPL5-DAP-Seq(GSE60143)/Homer	NNHGTACGGHNN	1e-1	-3.460e+00	0.0608	508.0	1.99%	450.1	1.83%
ANAC092(NAC)/colamp-ANAC092-DAP-Seq(GSE60143)/Homer	WRCKTGWNNNWCAMG	1e-1	-3.424e+00	0.0628	664.0	2.60%	595.2	2.42%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-1	-3.421e+00	0.0629	1935.0	7.58%	1789.4	7.28%
At1g14580(C2H2)/colamp-At1g14580-DAP-Seq(GSE60143)/Homer	CASAAAAMGACAAAA	1e-1	-3.415e+00	0.0631	246.0	0.96%	210.7	0.86%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-1	-3.379e+00	0.0653	227.0	0.89%	193.9	0.79%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-1	-3.345e+00	0.0675	1256.0	4.92%	1150.5	4.68%
ANAC047(NAC)/colamp-ANAC047-DAP-Seq(GSE60143)/Homer	WACACGTAACTT	1e-1	-3.330e+00	0.0683	1014.0	3.97%	924.0	3.76%
At4g28140(AP2EREBP)/colamp-At4g28140-DAP-Seq(GSE60143)/Homer	DCCACCGACCAW	1e-1	-3.287e+00	0.0712	585.0	2.29%	523.4	2.13%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-1	-3.278e+00	0.0716	4428.0	17.34%	4161.3	16.92%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-1	-3.265e+00	0.0725	733.0	2.87%	661.1	2.69%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e-1	-3.258e+00	0.0728	1971.0	7.72%	1826.2	7.43%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-1	-3.254e+00	0.0730	3844.0	15.05%	3605.6	14.66%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e-1	-3.227e+00	0.0748	1743.0	6.83%	1611.6	6.55%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-1	-3.222e+00	0.0750	1799.0	7.04%	1664.2	6.77%
DREB26(AP2EREBP)/col-DREB26-DAP-Seq(GSE60143)/Homer	CCACCGACAH	1e-1	-3.212e+00	0.0756	512.0	2.01%	456.4	1.86%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-1	-3.160e+00	0.0795	79.0	0.31%	63.0	0.26%
AT1G44830(AP2EREBP)/col-AT1G44830-DAP-Seq(GSE60143)/Homer	NCCACCGACA	1e-1	-3.096e+00	0.0844	672.0	2.63%	606.2	2.46%
TCP3(TCP)/colamp-TCP3-DAP-Seq(GSE60143)/Homer	WGTGGTCCCAAHWWW	1e-1	-3.096e+00	0.0844	672.0	2.63%	606.0	2.46%
At5g66730(C2H2)/colamp-At5g66730-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTK	1e-1	-3.085e+00	0.0852	407.0	1.59%	360.9	1.47%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-1	-3.044e+00	0.0885	1265.0	4.95%	1163.9	4.73%
RKD2(RWPRK)/colamp-RKD2-DAP-Seq(GSE60143)/Homer	GACKTTTCRDCTTCC	1e-1	-3.035e+00	0.0892	1285.0	5.03%	1182.9	4.81%
ATHB5(HB)/colamp-ATHB5-DAP-Seq(GSE60143)/Homer	AATGATTG	1e-1	-3.004e+00	0.0918	1596.0	6.25%	1476.1	6.00%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e-1	-2.922e+00	0.0994	237.0	0.93%	205.7	0.84%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-1	-2.878e+00	0.1037	1137.0	4.45%	1045.2	4.25%
CUC1(NAC)/col-CUC1-DAP-Seq(GSE60143)/Homer	TACTTGTNNNACAAG	1e-1	-2.836e+00	0.1080	703.0	2.75%	638.8	2.60%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-1	-2.832e+00	0.1082	116.0	0.45%	96.3	0.39%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e-1	-2.816e+00	0.1097	5.0	0.02%	2.6	0.01%
WRKY27(WRKY)/colamp-WRKY27-DAP-Seq(GSE60143)/Homer	NHGTTGACYTWD	1e-1	-2.799e+00	0.1114	1371.0	5.37%	1267.4	5.15%
CBF3(AP2EREBP)/colamp-CBF3-DAP-Seq(GSE60143)/Homer	YNRCCGACATNN	1e-1	-2.789e+00	0.1123	712.0	2.79%	647.3	2.63%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e-1	-2.780e+00	0.1131	431.0	1.69%	385.3	1.57%
BOS1(MYB)/col-BOS1-DAP-Seq(GSE60143)/Homer	NNRCCTAACT	1e-1	-2.772e+00	0.1137	1693.0	6.63%	1572.6	6.39%
dof42(C2C2dof)/col-dof42-DAP-Seq(GSE60143)/Homer	AAAAAGGC	1e-1	-2.754e+00	0.1155	1403.0	5.49%	1298.8	5.28%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e-1	-2.746e+00	0.1163	150.0	0.59%	127.5	0.52%
GRF9(GRF)/colamp-GRF9-DAP-Seq(GSE60143)/Homer	NWCTGACANNNNNNN	1e-1	-2.746e+00	0.1163	1874.0	7.34%	1744.7	7.09%
At5g47390(MYBrelated)/col-At5g47390-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e-1	-2.730e+00	0.1176	2153.0	8.43%	2009.8	8.17%
MYB44(MYB)/colamp-MYB44-DAP-Seq(GSE60143)/Homer	CVGTTWWKTCNGTTA	1e-1	-2.697e+00	0.1214	94.0	0.37%	77.2	0.31%
CBF4(AP2EREBP)/colamp-CBF4-DAP-Seq(GSE60143)/Homer	NRCCGACDWNNNNNN	1e-1	-2.688e+00	0.1222	1032.0	4.04%	949.7	3.86%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-1	-2.656e+00	0.1260	4261.0	16.69%	4019.1	16.34%
IDD7(C2H2)/col-IDD7-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTN	1e-1	-2.617e+00	0.1307	604.0	2.37%	548.2	2.23%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e-1	-2.604e+00	0.1322	117.0	0.46%	98.4	0.40%
MYB3R5(MYB)/col-MYB3R5-DAP-Seq(GSE60143)/Homer	THYAACGGTHAWAWT	1e-1	-2.598e+00	0.1327	98.0	0.38%	81.8	0.33%
At1g49010(MYBrelated)/col-At1g49010-DAP-Seq(GSE60143)/Homer	RGATAASNTT	1e-1	-2.587e+00	0.1339	3234.0	12.66%	3041.8	12.37%
At5g29000(G2like)/col-At5g29000-DAP-Seq(GSE60143)/Homer	RGAATATTCYHH	1e-1	-2.579e+00	0.1347	445.0	1.74%	400.7	1.63%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-1	-2.569e+00	0.1358	172.0	0.67%	148.2	0.60%
ANAC087(NAC)/col-ANAC087-DAP-Seq(GSE60143)/Homer	WVCKTGHNNNWCAMG	1e-1	-2.518e+00	0.1426	469.0	1.84%	423.0	1.72%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-1	-2.488e+00	0.1468	459.0	1.80%	415.0	1.69%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-1	-2.460e+00	0.1506	1060.0	4.15%	979.5	3.98%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-1	-2.455e+00	0.1511	3290.0	12.88%	3098.2	12.60%
NUC(C2H2)/col-NUC-DAP-Seq(GSE60143)/Homer	HAVAAAACGACAAAA	1e-1	-2.446e+00	0.1521	136.0	0.53%	116.6	0.47%
MYB116(MYB)/colamp-MYB116-DAP-Seq(GSE60143)/Homer	AGTTAGGCAN	1e-1	-2.438e+00	0.1530	1267.0	4.96%	1175.0	4.78%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-1	-2.435e+00	0.1532	6493.0	25.43%	6162.2	25.06%
GATA20(C2C2gata)/colamp-GATA20-DAP-Seq(GSE60143)/Homer	TNGATCNDNM	1e-1	-2.376e+00	0.1622	3580.0	14.02%	3377.6	13.73%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e-1	-2.360e+00	0.1645	176.0	0.69%	153.6	0.62%
ANL2(HB)/col-ANL2-DAP-Seq(GSE60143)/Homer	CATTAATTGC	1e-1	-2.351e+00	0.1658	949.0	3.72%	876.7	3.56%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-1	-2.348e+00	0.1660	1223.0	4.79%	1136.0	4.62%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-1	-2.308e+00	0.1724	1350.0	5.29%	1256.3	5.11%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e-1	-2.307e+00	0.1724	474.0	1.86%	431.0	1.75%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-2.295e+00	0.1739	876.0	3.43%	808.8	3.29%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-2.281e+00	0.1760	623.0	2.44%	570.7	2.32%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-2.281e+00	0.1760	329.0	1.29%	295.9	1.20%
AT5G61620(MYBrelated)/colamp-AT5G61620-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e0	-2.236e+00	0.1835	2474.0	9.69%	2326.9	9.46%
AT5G56840(MYBrelated)/colamp-AT5G56840-DAP-Seq(GSE60143)/Homer	TGGATAAGGT	1e0	-2.236e+00	0.1835	2139.0	8.38%	2007.4	8.16%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-2.235e+00	0.1835	321.0	1.26%	288.2	1.17%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e0	-2.234e+00	0.1835	2057.0	8.06%	1929.2	7.84%
AIL7(AP2EREBP)/colamp-AIL7-DAP-Seq(GSE60143)/Homer	KCACRAWTYYCGAGG	1e0	-2.215e+00	0.1860	845.0	3.31%	780.8	3.18%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-2.195e+00	0.1893	341.0	1.34%	307.8	1.25%
AT3G09735(S1Falike)/col-AT3G09735-DAP-Seq(GSE60143)/Homer	TTCTAGAANMTTCTA	1e0	-2.170e+00	0.1940	840.0	3.29%	776.8	3.16%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-2.144e+00	0.1985	111.0	0.43%	95.0	0.39%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-2.141e+00	0.1989	1144.0	4.48%	1064.6	4.33%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-2.135e+00	0.1996	1203.0	4.71%	1120.5	4.56%
FRS9(ND)/col-FRS9-DAP-Seq(GSE60143)/Homer	RGAGAGAGAAAG	1e0	-2.128e+00	0.2007	524.0	2.05%	479.1	1.95%
WRKY31(WRKY)/colamp-WRKY31-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWK	1e0	-2.113e+00	0.2033	1003.0	3.93%	931.4	3.79%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-2.101e+00	0.2054	296.0	1.16%	266.9	1.09%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-2.052e+00	0.2153	4315.0	16.90%	4090.3	16.63%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-2.050e+00	0.2154	55.0	0.22%	45.5	0.19%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-2.044e+00	0.2162	1026.0	4.02%	954.2	3.88%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-2.039e+00	0.2170	1009.0	3.95%	938.7	3.82%
JKD(C2H2)/col-JKD-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTT	1e0	-1.992e+00	0.2270	282.0	1.10%	254.4	1.03%
At5g65130(AP2EREBP)/colamp-At5g65130-DAP-Seq(GSE60143)/Homer	CCRCCGACAWTN	1e0	-1.988e+00	0.2275	504.0	1.97%	462.8	1.88%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.980e+00	0.2290	88.0	0.34%	75.2	0.31%
WRKY26(WRKY)/colamp-WRKY26-DAP-Seq(GSE60143)/Homer	CGTTGACTWDKN	1e0	-1.967e+00	0.2316	736.0	2.88%	681.1	2.77%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-1.965e+00	0.2316	1612.0	6.31%	1512.1	6.15%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.956e+00	0.2332	428.0	1.68%	391.5	1.59%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.956e+00	0.2332	739.0	2.89%	684.9	2.78%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-1.942e+00	0.2358	113.0	0.44%	98.7	0.40%
WRKY22(WRKY)/colamp-WRKY22-DAP-Seq(GSE60143)/Homer	WWAAAGTCAACK	1e0	-1.934e+00	0.2371	856.0	3.35%	795.4	3.23%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-1.924e+00	0.2391	658.0	2.58%	608.1	2.47%
HDG7(HB)/col-HDG7-DAP-Seq(GSE60143)/Homer	WGCATTTAATGC	1e0	-1.911e+00	0.2419	294.0	1.15%	266.5	1.08%
dHNF4(NR)/Fly-HNF4-ChIP-Seq(GSE73675)/Homer	GGTCCAAAGTCCAMT	1e0	-1.901e+00	0.2439	71.0	0.28%	60.8	0.25%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-1.892e+00	0.2456	13.0	0.05%	9.5	0.04%
WRKY3(WRKY)/col-WRKY3-DAP-Seq(GSE60143)/Homer	NCKTTGACYDDN	1e0	-1.882e+00	0.2476	892.0	3.49%	830.4	3.38%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-1.874e+00	0.2491	952.0	3.73%	887.3	3.61%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-1.872e+00	0.2493	496.0	1.94%	456.3	1.86%
HAT5(Homeobox)/colamp-HAT5-DAP-Seq(GSE60143)/Homer	DCAATWATTG	1e0	-1.842e+00	0.2564	244.0	0.96%	220.8	0.90%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.816e+00	0.2627	45.0	0.18%	37.5	0.15%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.792e+00	0.2686	1101.0	4.31%	1030.6	4.19%
MYB27(MYB)/colamp-MYB27-DAP-Seq(GSE60143)/Homer	TACCTAACWT	1e0	-1.744e+00	0.2813	274.0	1.07%	249.0	1.01%
HSFB3(HSF)/colamp-HSFB3-DAP-Seq(GSE60143)/Homer	TTCTAGAAGMTTHTW	1e0	-1.743e+00	0.2813	129.0	0.51%	114.0	0.46%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-1.678e+00	0.2995	2630.0	10.30%	2491.6	10.13%
STOP1(C2H2)/colamp-STOP1-DAP-Seq(GSE60143)/Homer	DTATCTGGKGRAGGT	1e0	-1.659e+00	0.3047	935.0	3.66%	875.1	3.56%
SPL14(SBP)/col-SPL14-DAP-Seq(GSE60143)/Homer	NNWHTGTACGGAHNH	1e0	-1.605e+00	0.3211	172.0	0.67%	155.9	0.63%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-1.605e+00	0.3211	77.0	0.30%	67.3	0.27%
ATHB21(HB)/colamp-ATHB21-DAP-Seq(GSE60143)/Homer	YCAATWAT	1e0	-1.594e+00	0.3236	801.0	3.14%	749.9	3.05%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e0	-1.593e+00	0.3236	2579.0	10.10%	2445.2	9.94%
AS2(LOBAS2)/col-AS2-DAP-Seq(GSE60143)/Homer	CCGDAAWWHMCGSCG	1e0	-1.567e+00	0.3313	177.0	0.69%	160.4	0.65%
AtIDD11(C2H2)/colamp-AtIDD11-DAP-Seq(GSE60143)/Homer	TTTGTCGTTT	1e0	-1.564e+00	0.3316	578.0	2.26%	539.0	2.19%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-1.557e+00	0.3332	325.0	1.27%	299.7	1.22%
MYB118(MYB)/colamp-MYB118-DAP-Seq(GSE60143)/Homer	TAWCCGTTAC	1e0	-1.544e+00	0.3372	453.0	1.77%	420.5	1.71%
At1g68670(G2like)/colamp-At1g68670-DAP-Seq(GSE60143)/Homer	WNWWHNRAAGATTCT	1e0	-1.527e+00	0.3421	908.0	3.56%	852.9	3.47%
AT2G28920(ND)/col-AT2G28920-DAP-Seq(GSE60143)/Homer	WAGATATTTWTW	1e0	-1.516e+00	0.3455	442.0	1.73%	410.3	1.67%
NLP7(RWPRK)/col-NLP7-DAP-Seq(GSE60143)/Homer	TGRCCYTTCR	1e0	-1.486e+00	0.3555	4705.0	18.42%	4486.9	18.25%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-1.473e+00	0.3596	326.0	1.28%	301.0	1.22%
AT4G00250(GeBP)/col-AT4G00250-DAP-Seq(GSE60143)/Homer	WDTGGATAAKRT	1e0	-1.471e+00	0.3596	891.0	3.49%	837.2	3.40%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-1.444e+00	0.3689	179.0	0.70%	163.6	0.67%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.443e+00	0.3689	3750.0	14.69%	3572.2	14.53%
VRN1(ABI3VP1)/col-VRN1-DAP-Seq(GSE60143)/Homer	TTTTTTTTTT	1e0	-1.430e+00	0.3727	6.0	0.02%	4.4	0.02%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-1.417e+00	0.3769	53.0	0.21%	46.2	0.19%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-1.401e+00	0.3824	1534.0	6.01%	1452.2	5.91%
At4g32800(AP2EREBP)/colamp-At4g32800-DAP-Seq(GSE60143)/Homer	DYCACCGACAHWWWH	1e0	-1.400e+00	0.3824	138.0	0.54%	125.1	0.51%
PTF1(TCP)/colamp-PTF1-DAP-Seq(GSE60143)/Homer	RDDGGGACCACA	1e0	-1.391e+00	0.3849	273.0	1.07%	252.3	1.03%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-1.385e+00	0.3867	783.0	3.07%	737.0	3.00%
MYB57(MYB)/col-MYB57-DAP-Seq(GSE60143)/Homer	TTACCTAACT	1e0	-1.320e+00	0.4121	812.0	3.18%	765.8	3.11%
ATHB33(ZFHD)/col-ATHB33-DAP-Seq(GSE60143)/Homer	NGTRATTAAK	1e0	-1.306e+00	0.4168	2296.0	8.99%	2184.2	8.88%
REM16(ABI3VP1)/col-REM16-DAP-Seq(GSE60143)/Homer	DTTTTTSCCGSMAAA	1e0	-1.279e+00	0.4277	2.0	0.01%	1.5	0.01%
MYB105(MYB)/colamp-MYB105-DAP-Seq(GSE60143)/Homer	RATWCCGTTA	1e0	-1.257e+00	0.4363	1062.0	4.16%	1005.6	4.09%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-1.245e+00	0.4412	1664.0	6.52%	1581.4	6.43%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.242e+00	0.4416	427.0	1.67%	400.9	1.63%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.238e+00	0.4427	469.0	1.84%	440.3	1.79%
WRKY40(WRKY)/colamp-WRKY40-DAP-Seq(GSE60143)/Homer	AHWAGTCAAC	1e0	-1.233e+00	0.4442	854.0	3.34%	807.1	3.28%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-1.232e+00	0.4442	113.0	0.44%	103.4	0.42%
WRKY42(WRKY)/colamp-WRKY42-DAP-Seq(GSE60143)/Homer	NAAAGTCAACGN	1e0	-1.227e+00	0.4455	473.0	1.85%	444.1	1.81%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-1.222e+00	0.4467	183.0	0.72%	169.5	0.69%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.196e+00	0.4576	135.0	0.53%	124.9	0.51%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-1.188e+00	0.4606	1472.0	5.76%	1399.0	5.69%
ANAC094(NAC)/col-ANAC094-DAP-Seq(GSE60143)/Homer	DVCGTRNNNNNYACG	1e0	-1.159e+00	0.4734	649.0	2.54%	613.0	2.49%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-1.145e+00	0.4794	811.0	3.18%	769.0	3.13%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-1.099e+00	0.5013	331.0	1.30%	311.9	1.27%
MYB13(MYB)/col-MYB13-DAP-Seq(GSE60143)/Homer	HYCACCWACCHH	1e0	-1.093e+00	0.5034	1330.0	5.21%	1266.4	5.15%
ZML1(C2C2gata)/colamp-ZML1-DAP-Seq(GSE60143)/Homer	ATCWYRACCGTTSRW	1e0	-1.092e+00	0.5034	11.0	0.04%	9.6	0.04%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-1.087e+00	0.5045	193.0	0.76%	180.8	0.74%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.070e+00	0.5125	558.0	2.19%	528.0	2.15%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-1.059e+00	0.5175	24.0	0.09%	21.1	0.09%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-1.058e+00	0.5175	453.0	1.77%	428.8	1.74%
FEA4(bZIP)/Corn-FEA4-ChIP-Seq(GSE61954)/Homer	TGACGTCACS	1e0	-1.045e+00	0.5230	1902.0	7.45%	1816.9	7.39%
HAT2(Homeobox)/colamp-HAT2-DAP-Seq(GSE60143)/Homer	CYAATSATTR	1e0	-1.044e+00	0.5230	1319.0	5.17%	1257.9	5.11%
 Ik-1	NHTTGGGAATRCC	1e0	-1.038e+00	0.5248	25536.0	100.00%	24592.1	100.00%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.011e+00	0.5383	94.0	0.37%	87.9	0.36%
ATHB18(Homeobox)/colamp-ATHB18-DAP-Seq(GSE60143)/Homer	YCAATSATTG	1e0	-1.006e+00	0.5402	277.0	1.08%	261.8	1.06%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-1.000e+00	0.5427	14.0	0.05%	12.3	0.05%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-9.944e-01	0.5449	3008.0	11.78%	2880.8	11.71%
AT3G58630(Trihelix)/col-AT3G58630-DAP-Seq(GSE60143)/Homer	TCTCCGGCGA	1e0	-9.829e-01	0.5503	373.0	1.46%	353.4	1.44%
GATA12(C2C2gata)/col-GATA12-DAP-Seq(GSE60143)/Homer	YAGATCTRAW	1e0	-9.753e-01	0.5536	913.0	3.58%	870.5	3.54%
bZIP42(bZIP)/colamp-bZIP42-DAP-Seq(GSE60143)/Homer	GCCACGTCAGCA	1e0	-9.714e-01	0.5549	4.0	0.02%	3.9	0.02%
AT3G57600(AP2EREBP)/col-AT3G57600-DAP-Seq(GSE60143)/Homer	GGCGGTGG	1e0	-9.692e-01	0.5552	2556.0	10.01%	2447.4	9.95%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-9.520e-01	0.5640	1718.0	6.73%	1644.0	6.68%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-9.489e-01	0.5648	1621.0	6.35%	1550.5	6.30%
At5g58900(MYBrelated)/colamp-At5g58900-DAP-Seq(GSE60143)/Homer	WWWTYTTATCTWWWW	1e0	-9.435e-01	0.5670	2459.0	9.63%	2355.5	9.58%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-9.431e-01	0.5670	299.0	1.17%	283.3	1.15%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-9.341e-01	0.5705	2828.0	11.07%	2710.3	11.02%
SGR5(C2H2)/colamp-SGR5-DAP-Seq(GSE60143)/Homer	TTTGTCTTTTTT	1e0	-9.339e-01	0.5705	1138.0	4.46%	1087.4	4.42%
ATHB6(Homeobox)/Arabidopsis-HB6-ChIP-Seq(GSE80564)/Homer	CAATNATTBN	1e0	-9.318e-01	0.5705	1189.0	4.66%	1136.6	4.62%
MGP(C2H2)/colamp-MGP-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTW	1e0	-9.316e-01	0.5705	326.0	1.28%	310.0	1.26%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-9.143e-01	0.5783	1958.0	7.67%	1875.7	7.63%
ATHB20(Homeobox)/colamp-ATHB20-DAP-Seq(GSE60143)/Homer	CAATHATT	1e0	-9.125e-01	0.5784	689.0	2.70%	657.9	2.68%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e0	-9.045e-01	0.5822	314.0	1.23%	298.9	1.22%
BIM1(bHLH)/colamp-BIM1-DAP-Seq(GSE60143)/Homer	NNNNNNVTCACGTGM	1e0	-9.005e-01	0.5836	202.0	0.79%	191.4	0.78%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-8.949e-01	0.5859	388.0	1.52%	369.9	1.50%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-8.944e-01	0.5859	2133.0	8.35%	2044.0	8.31%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-8.911e-01	0.5864	205.0	0.80%	194.4	0.79%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e0	-8.886e-01	0.5869	1604.0	6.28%	1536.7	6.25%
MYB63(MYB)/col-MYB63-DAP-Seq(GSE60143)/Homer	BHYACCWACCHH	1e0	-8.874e-01	0.5869	902.0	3.53%	862.3	3.51%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-8.630e-01	0.6003	1375.0	5.38%	1317.2	5.36%
ATHB7(Homeobox)/col-ATHB7-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-8.427e-01	0.6116	1063.0	4.16%	1018.9	4.14%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-8.345e-01	0.6157	201.0	0.79%	191.4	0.78%
DEAR3(AP2EREBP)/colamp-DEAR3-DAP-Seq(GSE60143)/Homer	BCACCGACAWNNNNN	1e0	-8.277e-01	0.6190	446.0	1.75%	426.0	1.73%
WRKY45(WRKY)/col-WRKY45-DAP-Seq(GSE60143)/Homer	HNNNKTTGACTWWNH	1e0	-8.042e-01	0.6328	560.0	2.19%	536.8	2.18%
AT5G59990(C2C2COlike)/colamp-AT5G59990-DAP-Seq(GSE60143)/Homer	TCTCAACCGTTCATT	1e0	-7.695e-01	0.6541	32.0	0.13%	30.3	0.12%
GATA19(C2C2gata)/colamp-GATA19-DAP-Seq(GSE60143)/Homer	ATCSGATCVG	1e0	-7.545e-01	0.6629	82.0	0.32%	78.3	0.32%
HAT1(Homeobox)/col-HAT1-DAP-Seq(GSE60143)/Homer	SCAATCATTGNN	1e0	-7.417e-01	0.6704	238.0	0.93%	228.5	0.93%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-7.411e-01	0.6704	1582.0	6.20%	1521.3	6.19%
At1g69690(TCP)/colamp-At1g69690-DAP-Seq(GSE60143)/Homer	NHGTGGGGCCCACHW	1e0	-7.260e-01	0.6790	641.0	2.51%	616.2	2.51%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-7.179e-01	0.6835	674.0	2.64%	648.3	2.64%
GATA11(C2C2gata)/col-GATA11-DAP-Seq(GSE60143)/Homer	DDHYYAGATCTR	1e0	-7.095e-01	0.6882	654.0	2.56%	629.8	2.56%
AT1G72740(MYBrelated)/colamp-AT1G72740-DAP-Seq(GSE60143)/Homer	NNWWAMCCTAAHWNN	1e0	-7.028e-01	0.6918	1952.0	7.64%	1879.8	7.64%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-6.985e-01	0.6937	71.0	0.28%	68.7	0.28%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-6.946e-01	0.6954	126.0	0.49%	121.7	0.50%
bHLH18(bHLH)/col-bHLH18-DAP-Seq(GSE60143)/Homer	CACGTGTTYCACGTG	1e0	-6.584e-01	0.7199	24.0	0.09%	23.2	0.09%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-6.355e-01	0.7355	5118.0	20.04%	4933.4	20.06%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e0	-6.337e-01	0.7357	296.0	1.16%	286.9	1.17%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-6.327e-01	0.7357	1001.0	3.92%	966.7	3.93%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-6.253e-01	0.7397	1149.0	4.50%	1109.8	4.51%
WRKY71(WRKY)/col-WRKY71-DAP-Seq(GSE60143)/Homer	CKTTGACYWW	1e0	-6.195e-01	0.7429	1100.0	4.31%	1062.9	4.32%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-6.106e-01	0.7484	629.0	2.46%	608.7	2.48%
CAMTA1(CAMTA)/col-CAMTA1-DAP-Seq(GSE60143)/Homer	WWAACGCGTT	1e0	-5.897e-01	0.7631	937.0	3.67%	906.3	3.69%
EIN3(EIL)/col-EIN3-DAP-Seq(GSE60143)/Homer	ARATTCAATGWATYT	1e0	-5.817e-01	0.7680	178.0	0.70%	173.6	0.71%
CCA(Myb)/Arabidopsis-CCA.GFP-ChIP-Seq(GSE70533)/Homer	AGATATYTTT	1e0	-5.758e-01	0.7715	1269.0	4.97%	1227.1	4.99%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-5.746e-01	0.7715	150.0	0.59%	146.6	0.60%
AT1G24250(Orphan)/col-AT1G24250-DAP-Seq(GSE60143)/Homer	KTDGTTGGTDGTTGG	1e0	-5.727e-01	0.7715	489.0	1.91%	474.9	1.93%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-5.596e-01	0.7805	318.0	1.25%	309.6	1.26%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-5.596e-01	0.7805	798.0	3.12%	773.2	3.14%
MS188(MYB)/colamp-MS188-DAP-Seq(GSE60143)/Homer	WARKTAGGTRRA	1e0	-5.339e-01	0.7985	1329.0	5.20%	1287.1	5.23%
IDD2(C2H2)/colamp-IDD2-DAP-Seq(GSE60143)/Homer	HAVAAAAMGACAAAA	1e0	-5.159e-01	0.8118	187.0	0.73%	183.7	0.75%
HSF21(HSF)/col-HSF21-DAP-Seq(GSE60143)/Homer	CTTCTAGAAGMTTYW	1e0	-5.104e-01	0.8150	191.0	0.75%	187.3	0.76%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-5.104e-01	0.8150	155.0	0.61%	152.7	0.62%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-5.070e-01	0.8154	263.0	1.03%	257.8	1.05%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-5.057e-01	0.8154	493.0	1.93%	480.3	1.95%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-4.871e-01	0.8294	2.0	0.01%	2.5	0.01%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-4.835e-01	0.8312	386.0	1.51%	377.5	1.54%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-4.686e-01	0.8424	600.0	2.35%	585.7	2.38%
MYB74(MYB)/colamp-MYB74-DAP-Seq(GSE60143)/Homer	YYYACCTACCWH	1e0	-4.666e-01	0.8429	1105.0	4.33%	1074.6	4.37%
AT2G20400(G2like)/colamp-AT2G20400-DAP-Seq(GSE60143)/Homer	DNVGAATATTCBNHN	1e0	-4.653e-01	0.8429	190.0	0.74%	187.2	0.76%
GBF5(bZIP)/colamp-GBF5-DAP-Seq(GSE60143)/Homer	WKNWSACGTGGCAWN	1e0	-4.594e-01	0.8465	513.0	2.01%	501.2	2.04%
AREB3(bZIP)/col-AREB3-DAP-Seq(GSE60143)/Homer	NKGMCACGTGDCMNN	1e0	-4.529e-01	0.8508	521.0	2.04%	509.5	2.07%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e0	-4.521e-01	0.8508	719.0	2.82%	701.6	2.85%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-4.485e-01	0.8521	1563.0	6.12%	1518.4	6.17%
At2g03500(G2like)/col-At2g03500-DAP-Seq(GSE60143)/Homer	WWAGAATATTCT	1e0	-4.325e-01	0.8646	336.0	1.32%	330.6	1.34%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-4.276e-01	0.8675	1665.0	6.52%	1618.1	6.58%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-4.257e-01	0.8680	2062.0	8.07%	2002.8	8.14%
AT3G10580(MYBrelated)/colamp-AT3G10580-DAP-Seq(GSE60143)/Homer	TACCTAACWNHW	1e0	-4.170e-01	0.8743	738.0	2.89%	721.6	2.93%
AT5G22990(C2H2)/col-AT5G22990-DAP-Seq(GSE60143)/Homer	WCGAHDTCGWHN	1e0	-4.141e-01	0.8755	101.0	0.40%	101.8	0.41%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-4.117e-01	0.8764	1295.0	5.07%	1261.3	5.13%
BIM3(bHLH)/col-BIM3-DAP-Seq(GSE60143)/Homer	TWVTCACGTGAB	1e0	-4.028e-01	0.8830	211.0	0.83%	209.1	0.85%
RAV1(RAV)/colamp-RAV1-DAP-Seq(GSE60143)/Homer	TWWTTTCTGTTG	1e0	-3.997e-01	0.8844	1095.0	4.29%	1068.2	4.34%
MYB121(MYB)/col-MYB121-DAP-Seq(GSE60143)/Homer	YNTACCTAACWW	1e0	-3.972e-01	0.8853	598.0	2.34%	586.9	2.39%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-3.946e-01	0.8864	38.0	0.15%	39.5	0.16%
BPC6(BBRBPC)/col-BPC6-DAP-Seq(GSE60143)/Homer	YTYTCTCTCTCTCTA	1e0	-3.940e-01	0.8864	41.0	0.16%	42.5	0.17%
bZIP44(bZIP)/colamp-bZIP44-DAP-Seq(GSE60143)/Homer	NDTGCCACGTCAGCH	1e0	-3.940e-01	0.8864	29.0	0.11%	30.7	0.13%
WRKY14(WRKY)/colamp-WRKY14-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTN	1e0	-3.811e-01	0.8946	659.0	2.58%	646.6	2.63%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-3.710e-01	0.9025	251.0	0.98%	249.8	1.02%
HY5(bZIP)/colamp-HY5-DAP-Seq(GSE60143)/Homer	RRTSACGTSD	1e0	-3.633e-01	0.9081	1364.0	5.34%	1331.8	5.42%
MYB49(MYB)/col-MYB49-DAP-Seq(GSE60143)/Homer	ARKTAGGTRR	1e0	-3.599e-01	0.9099	1944.0	7.61%	1893.8	7.70%
ANAC079(NAC)/colamp-ANAC079-DAP-Seq(GSE60143)/Homer	TACACGCAACCT	1e0	-3.552e-01	0.9129	595.0	2.33%	585.6	2.38%
bZIP52(bZIP)/colamp-bZIP52-DAP-Seq(GSE60143)/Homer	NDNHCAGCTGTCANN	1e0	-3.533e-01	0.9134	2762.0	10.82%	2685.3	10.92%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-3.470e-01	0.9179	124.0	0.49%	125.0	0.51%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-3.430e-01	0.9202	1509.0	5.91%	1473.0	5.99%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-3.304e-01	0.9306	444.0	1.74%	439.9	1.79%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-3.300e-01	0.9306	717.0	2.81%	705.1	2.87%
ANAC038(NAC)/col-ANAC038-DAP-Seq(GSE60143)/Homer	ACACGTWAYC	1e0	-3.256e-01	0.9324	3755.0	14.70%	3648.3	14.84%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-3.190e-01	0.9373	777.0	3.04%	764.4	3.11%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-3.158e-01	0.9391	429.0	1.68%	425.9	1.73%
MYB4(MYB)/col200-MYB4-DAP-Seq(GSE60143)/Homer	WAGKTAGGTARR	1e0	-3.102e-01	0.9430	1120.0	4.39%	1098.5	4.47%
At5g08520(MYBrelated)/colamp-At5g08520-DAP-Seq(GSE60143)/Homer	ADBSTTATCY	1e0	-3.083e-01	0.9434	1732.0	6.78%	1692.1	6.88%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e0	-3.080e-01	0.9434	116.0	0.45%	118.9	0.48%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-2.980e-01	0.9506	215.0	0.84%	216.7	0.88%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-2.930e-01	0.9540	1909.0	7.48%	1865.5	7.59%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-2.758e-01	0.9692	764.0	2.99%	754.2	3.07%
DEAR5(AP2EREBP)/col-DEAR5-DAP-Seq(GSE60143)/Homer	NDWTGTCGGTGRWDN	1e0	-2.741e-01	0.9695	202.0	0.79%	204.6	0.83%
PLT3(AP2EREBP)/col-PLT3-DAP-Seq(GSE60143)/Homer	GCACGNWTHYCGAGG	1e0	-2.713e-01	0.9709	75.0	0.29%	78.5	0.32%
AGL15(MADS)/col-AGL15-DAP-Seq(GSE60143)/Homer	TTTCCHWATWDGGAA	1e0	-2.689e-01	0.9719	281.0	1.10%	282.5	1.15%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-2.658e-01	0.9736	830.0	3.25%	819.3	3.33%
CRC(C2C2YABBY)/col-CRC-DAP-Seq(GSE60143)/Homer	TWATSATA	1e0	-2.653e-01	0.9736	1900.0	7.44%	1859.1	7.56%
GATA4(C2C2gata)/col-GATA4-DAP-Seq(GSE60143)/Homer	DDWTYAGATCTR	1e0	-2.592e-01	0.9773	1189.0	4.66%	1169.7	4.76%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-2.543e-01	0.9808	174.0	0.68%	177.3	0.72%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-2.530e-01	0.9808	322.0	1.26%	323.1	1.31%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-2.500e-01	0.9823	1181.0	4.62%	1162.3	4.73%
SPL3(SBP)/colamp-SPL3-DAP-Seq(GSE60143)/Homer	WDTTGTACGGAH	1e0	-2.499e-01	0.9823	38.0	0.15%	41.7	0.17%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.334e-01	0.9946	112.0	0.44%	116.7	0.47%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.334e-01	0.9946	112.0	0.44%	116.7	0.47%
ZML2(C2C2gata)/col-ZML2-DAP-Seq(GSE60143)/Homer	CATCATCATC	1e0	-2.282e-01	0.9985	334.0	1.31%	336.7	1.37%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-2.251e-01	1.0000	872.0	3.41%	863.7	3.51%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-2.208e-01	1.0000	1684.0	6.59%	1654.0	6.73%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-2.200e-01	1.0000	4294.0	16.82%	4184.5	17.02%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-2.171e-01	1.0000	1699.0	6.65%	1669.2	6.79%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-2.073e-01	1.0000	716.0	2.80%	712.9	2.90%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-2.031e-01	1.0000	357.0	1.40%	360.6	1.47%
AT1G04880(ARID)/colamp-AT1G04880-DAP-Seq(GSE60143)/Homer	AAACTATATADTATA	1e0	-2.019e-01	1.0000	158.0	0.62%	163.2	0.66%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e0	-2.019e-01	1.0000	1039.0	4.07%	1028.3	4.18%
AT1G01250(AP2EREBP)/col-AT1G01250-DAP-Seq(GSE60143)/Homer	YCACCGACAHTW	1e0	-1.998e-01	1.0000	102.0	0.40%	107.0	0.44%
BPC1(BBRBPC)/colamp-BPC1-DAP-Seq(GSE60143)/Homer	GARGAGAGAGAA	1e0	-1.909e-01	1.0000	1246.0	4.88%	1231.5	5.01%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e0	-1.849e-01	1.0000	363.0	1.42%	367.7	1.50%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-1.815e-01	1.0000	296.0	1.16%	301.4	1.23%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-1.770e-01	1.0000	143.0	0.56%	149.2	0.61%
AT2G01818(PLATZ)/col-AT2G01818-DAP-Seq(GSE60143)/Homer	TCTAGAABSTTC	1e0	-1.755e-01	1.0000	329.0	1.29%	334.0	1.36%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.587e-01	1.0000	779.0	3.05%	778.4	3.17%
ANAC017(NAC)/colamp-ANAC017-DAP-Seq(GSE60143)/Homer	TMCTTGNNNNNCAAG	1e0	-1.563e-01	1.0000	176.0	0.69%	183.5	0.75%
ATHB15(HB)/col-ATHB15-DAP-Seq(GSE60143)/Homer	GYAATSATTA	1e0	-1.550e-01	1.0000	445.0	1.74%	450.5	1.83%
WRKY30(WRKY)/colamp-WRKY30-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e0	-1.537e-01	1.0000	371.0	1.45%	377.9	1.54%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-1.483e-01	1.0000	1027.0	4.02%	1022.1	4.16%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-1.424e-01	1.0000	2041.0	7.99%	2013.0	8.19%
ATHB25(ZFHD)/colamp-ATHB25-DAP-Seq(GSE60143)/Homer	TAATTAVB	1e0	-1.409e-01	1.0000	1937.0	7.59%	1911.8	7.77%
bZIP53(bZIP)/colamp-bZIP53-DAP-Seq(GSE60143)/Homer	NDNHSACGTGKMNNN	1e0	-1.408e-01	1.0000	532.0	2.08%	537.7	2.19%
SPL13(SBP)/col-SPL13-DAP-Seq(GSE60143)/Homer	WAHTGTACGGAH	1e0	-1.357e-01	1.0000	83.0	0.33%	90.8	0.37%
AGL13(MADS)/col-AGL13-DAP-Seq(GSE60143)/Homer	TWCCAWWTWTGGWAA	1e0	-1.306e-01	1.0000	75.0	0.29%	82.1	0.33%
HSF7(HSF)/colamp-HSF7-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-1.291e-01	1.0000	360.0	1.41%	368.8	1.50%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	-1.255e-01	1.0000	8.0	0.03%	11.3	0.05%
GT1(Trihelix)/col-GT1-DAP-Seq(GSE60143)/Homer	TTAACCATGGTTAAD	1e0	-1.229e-01	1.0000	15.0	0.06%	19.2	0.08%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-1.205e-01	1.0000	25.0	0.10%	30.6	0.12%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-1.152e-01	1.0000	388.0	1.52%	397.0	1.61%
At5g22890(C2H2)/col-At5g22890-DAP-Seq(GSE60143)/Homer	NSAGGTKWTATCTGD	1e0	-1.126e-01	1.0000	55.0	0.22%	62.4	0.25%
WRKY65(WRKY)/colamp-WRKY65-DAP-Seq(GSE60143)/Homer	AWWWAGTCAACG	1e0	-1.101e-01	1.0000	621.0	2.43%	628.9	2.56%
bZIP28(bZIP)/col-bZIP28-DAP-Seq(GSE60143)/Homer	TGCCACGTSABH	1e0	-1.091e-01	1.0000	460.0	1.80%	469.9	1.91%
bHLH157(bHLH)/col-bHLH157-DAP-Seq(GSE60143)/Homer	KACACGTCTCTY	1e0	-1.082e-01	1.0000	328.0	1.28%	338.4	1.38%
FUS3(ABI3VP1)/col-FUS3-DAP-Seq(GSE60143)/Homer	DNNWTNTGCATGKNN	1e0	-9.869e-02	1.0000	1560.0	6.11%	1551.0	6.31%
RAP21(AP2EREBP)/colamp-RAP21-DAP-Seq(GSE60143)/Homer	BCACCGACAHNN	1e0	-9.601e-02	1.0000	216.0	0.85%	227.2	0.92%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e0	-9.345e-02	1.0000	545.0	2.13%	555.2	2.26%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-8.917e-02	1.0000	110.0	0.43%	120.4	0.49%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-8.521e-02	1.0000	3552.0	13.91%	3495.6	14.21%
WRKY43(WRKY)/colamp-WRKY43-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTT	1e0	-8.402e-02	1.0000	451.0	1.77%	463.1	1.88%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e0	-8.340e-02	1.0000	464.0	1.82%	476.1	1.94%
WRKY46(WRKY)/colamp-WRKY46-DAP-Seq(GSE60143)/Homer	AAAGTCAACGSN	1e0	-8.264e-02	1.0000	69.0	0.27%	78.4	0.32%
ABF2(bZIP)/col-ABF2-DAP-Seq(GSE60143)/Homer	KGMCACGTGDCMHHH	1e0	-7.885e-02	1.0000	366.0	1.43%	379.6	1.54%
bZIP48(bZIP)/colamp-bZIP48-DAP-Seq(GSE60143)/Homer	DDWWKVTSACGTGGC	1e0	-7.858e-02	1.0000	554.0	2.17%	566.8	2.30%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-7.554e-02	1.0000	479.0	1.88%	492.3	2.00%
GBF6(bZIP)/colamp-GBF6-DAP-Seq(GSE60143)/Homer	WWTGMCACGTCABCW	1e0	-7.100e-02	1.0000	332.0	1.30%	347.0	1.41%
HSF6(HSF)/col-HSF6-DAP-Seq(GSE60143)/Homer	TTYTAGAAGCTTCTA	1e0	-7.057e-02	1.0000	415.0	1.63%	429.9	1.75%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e0	-7.003e-02	1.0000	5700.0	22.32%	5585.5	22.71%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-6.597e-02	1.0000	922.0	3.61%	932.7	3.79%
AGL95(ND)/col-AGL95-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-6.242e-02	1.0000	196.0	0.77%	210.2	0.85%
WRKY8(WRKY)/colamp-WRKY8-DAP-Seq(GSE60143)/Homer	CGTTGACTTT	1e0	-6.234e-02	1.0000	145.0	0.57%	158.2	0.64%
At2g45680(TCP)/colamp-At2g45680-DAP-Seq(GSE60143)/Homer	GTGGGNCCCACNDND	1e0	-6.209e-02	1.0000	144.0	0.56%	157.4	0.64%
GATA6(C2C2gata)/col200-GATA6-DAP-Seq(GSE60143)/Homer	TAGATCTARAHH	1e0	-6.141e-02	1.0000	189.0	0.74%	203.7	0.83%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-6.131e-02	1.0000	2749.0	10.77%	2722.1	11.07%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-6.000e-02	1.0000	1323.0	5.18%	1328.4	5.40%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-5.905e-02	1.0000	4544.0	17.79%	4469.4	18.17%
SeqBias: CA-repeat	CACACACACA	1e0	-5.862e-02	1.0000	11237.0	44.00%	10942.6	44.50%
MYB39(MYB)/col-MYB39-DAP-Seq(GSE60143)/Homer	WWAARKTAGGTGRAA	1e0	-5.831e-02	1.0000	232.0	0.91%	247.7	1.01%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-5.778e-02	1.0000	390.0	1.53%	406.4	1.65%
ATHB23(ZFHD)/col-ATHB23-DAP-Seq(GSE60143)/Homer	HTAATTARNN	1e0	-5.619e-02	1.0000	1546.0	6.05%	1548.5	6.30%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-5.512e-02	1.0000	120.0	0.47%	133.3	0.54%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-5.359e-02	1.0000	3380.0	13.24%	3340.7	13.58%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e0	-4.975e-02	1.0000	3564.0	13.96%	3521.2	14.32%
AGL6(MADS)/col-AGL6-DAP-Seq(GSE60143)/Homer	TTWCCWWAWWDGGWA	1e0	-4.961e-02	1.0000	219.0	0.86%	235.2	0.96%
bZIP69(bZIP)/col-bZIP69-DAP-Seq(GSE60143)/Homer	GACAGCTGKCAW	1e0	-4.739e-02	1.0000	201.0	0.79%	217.5	0.88%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-4.718e-02	1.0000	437.0	1.71%	455.3	1.85%
bZIP3(bZIP)/col-bZIP3-DAP-Seq(GSE60143)/Homer	DWKNHSACGTGGCAD	1e0	-4.710e-02	1.0000	811.0	3.18%	827.5	3.36%
WRKY7(WRKY)/colamp-WRKY7-DAP-Seq(GSE60143)/Homer	AAAAGTCAACGSHWD	1e0	-4.538e-02	1.0000	1.0	0.00%	3.0	0.01%
GATA14(C2C2gata)/col-GATA14-DAP-Seq(GSE60143)/Homer	AYCAGATCTG	1e0	-4.342e-02	1.0000	999.0	3.91%	1014.2	4.12%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-4.308e-02	1.0000	2137.0	8.37%	2132.2	8.67%
HSFA6A(HSF)/col-HSFA6A-DAP-Seq(GSE60143)/Homer	RGAAGNTTCTAGAAN	1e0	-4.276e-02	1.0000	71.0	0.28%	83.8	0.34%
DDF2(AP2EREBP)/col-DDF2-DAP-Seq(GSE60143)/Homer	GATGTCGRCR	1e0	-4.272e-02	1.0000	25.0	0.10%	33.9	0.14%
WRKY17(WRKY)/colamp-WRKY17-DAP-Seq(GSE60143)/Homer	GCGTTGACTTTT	1e0	-4.235e-02	1.0000	8.0	0.03%	13.3	0.05%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-4.215e-02	1.0000	211.0	0.83%	228.2	0.93%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-3.965e-02	1.0000	1175.0	4.60%	1189.4	4.84%
WRKY21(WRKY)/colamp-WRKY21-DAP-Seq(GSE60143)/Homer	DCGTTGACTTTT	1e0	-3.771e-02	1.0000	119.0	0.47%	134.9	0.55%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-3.407e-02	1.0000	58.0	0.23%	70.6	0.29%
Knotted(Homeobox)/Corn-KN1-ChIP-Seq(GSE39161)/Homer	GAYGNGACRGGN	1e0	-3.391e-02	1.0000	2934.0	11.49%	2916.2	11.86%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-3.335e-02	1.0000	967.0	3.79%	986.6	4.01%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-3.212e-02	1.0000	1104.0	4.32%	1123.0	4.57%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-3.155e-02	1.0000	3043.0	11.92%	3024.5	12.30%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-3.123e-02	1.0000	4042.0	15.83%	3999.0	16.26%
AT3G42860(zfGRF)/col-AT3G42860-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e0	-3.099e-02	1.0000	320.0	1.25%	341.1	1.39%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e0	-2.976e-02	1.0000	2389.0	9.36%	2386.5	9.70%
FAR1(FAR1)/col-FAR1-DAP-Seq(GSE60143)/Homer	TKNNNYYCACGCGCY	1e0	-2.886e-02	1.0000	282.0	1.10%	303.2	1.23%
VIP1(bZIP)/col-VIP1-DAP-Seq(GSE60143)/Homer	NTTGACAGCTGTCAN	1e0	-2.786e-02	1.0000	332.0	1.30%	355.0	1.44%
WRKY11(WRKY)/col-WRKY11-DAP-Seq(GSE60143)/Homer	SCGTTGACTTTN	1e0	-2.600e-02	1.0000	144.0	0.56%	162.9	0.66%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-2.600e-02	1.0000	58.0	0.23%	71.4	0.29%
HSFC1(HSF)/col-HSFC1-DAP-Seq(GSE60143)/Homer	HTTCTAGAADCTTCT	1e0	-2.428e-02	1.0000	413.0	1.62%	438.0	1.78%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-2.366e-02	1.0000	565.0	2.21%	590.3	2.40%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-2.356e-02	1.0000	258.0	1.01%	280.0	1.14%
PHV(HB)/col-PHV-DAP-Seq(GSE60143)/Homer	RTAATSATTA	1e0	-2.352e-02	1.0000	540.0	2.11%	565.4	2.30%
ATHB34(ZFHD)/colamp-ATHB34-DAP-Seq(GSE60143)/Homer	TRATTARS	1e0	-2.273e-02	1.0000	1346.0	5.27%	1366.2	5.56%
MYB113(MYB)/col-MYB113-DAP-Seq(GSE60143)/Homer	HNDAWTCMGTTAYWN	1e0	-2.238e-02	1.0000	847.0	3.32%	872.7	3.55%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-2.190e-02	1.0000	425.0	1.66%	450.6	1.83%
ATHB24(ZFHD)/colamp-ATHB24-DAP-Seq(GSE60143)/Homer	TAATTAAS	1e0	-2.186e-02	1.0000	1228.0	4.81%	1250.3	5.08%
HSFA1E(HSF)/col-HSFA1E-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-2.139e-02	1.0000	143.0	0.56%	162.6	0.66%
bHLH34(bHLH)/colamp-bHLH34-DAP-Seq(GSE60143)/Homer	HGWGRHWGACACGTG	1e0	-2.115e-02	1.0000	533.0	2.09%	559.6	2.28%
AT1G10720(BSD)/col-AT1G10720-DAP-Seq(GSE60143)/Homer	TTCTAGAAKCTTCTA	1e0	-1.777e-02	1.0000	45.0	0.18%	59.0	0.24%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-1.741e-02	1.0000	832.0	3.26%	860.3	3.50%
At3g11280(MYBrelated)/col-At3g11280-DAP-Seq(GSE60143)/Homer	GATAAGRT	1e0	-1.696e-02	1.0000	1278.0	5.00%	1303.0	5.30%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-1.660e-02	1.0000	2446.0	9.58%	2453.5	9.98%
TCP17(TCP)/col-TCP17-DAP-Seq(GSE60143)/Homer	GTGGTCCCCA	1e0	-1.651e-02	1.0000	136.0	0.53%	156.6	0.64%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-1.619e-02	1.0000	2366.0	9.27%	2375.2	9.66%
WRKY47(WRKY)/colamp-WRKY47-DAP-Seq(GSE60143)/Homer	WAAGTCAACGBT	1e0	-1.552e-02	1.0000	307.0	1.20%	333.0	1.35%
GATA1(C2C2gata)/colamp-GATA1-DAP-Seq(GSE60143)/Homer	DDWWYYAGATCTRRW	1e0	-1.531e-02	1.0000	528.0	2.07%	557.0	2.27%
PIF7(bHLH)/col-PIF7-DAP-Seq(GSE60143)/Homer	CCACGTGGNH	1e0	-1.378e-02	1.0000	433.0	1.70%	462.4	1.88%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e0	-1.284e-02	1.0000	967.0	3.79%	998.8	4.06%
bZIP16(bZIP)/colamp-bZIP16-DAP-Seq(GSE60143)/Homer	TGCCACGTGD	1e0	-1.153e-02	1.0000	475.0	1.86%	506.6	2.06%
AGL16(MADS)/col-AGL16-DAP-Seq(GSE60143)/Homer	TWCCHWATWDGGAAA	1e0	-1.145e-02	1.0000	159.0	0.62%	182.6	0.74%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-1.110e-02	1.0000	851.0	3.33%	884.1	3.60%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-1.088e-02	1.0000	948.0	3.71%	981.6	3.99%
HSFB4(HSF)/col-HSFB4-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-1.013e-02	1.0000	65.0	0.25%	82.6	0.34%
TCP16(TCP)/colamp-TCP16-DAP-Seq(GSE60143)/Homer	GTGGDCCYNNNNNNN	1e0	-9.953e-03	1.0000	1754.0	6.87%	1781.8	7.25%
AGL25(MADS)/colamp-AGL25-DAP-Seq(GSE60143)/Homer	TTTCCATWTWTGGAA	1e0	-8.546e-03	1.0000	91.0	0.36%	111.2	0.45%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-7.735e-03	1.0000	8614.0	33.73%	8472.7	34.45%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-7.715e-03	1.0000	1336.0	5.23%	1371.3	5.58%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-7.469e-03	1.0000	219.0	0.86%	247.0	1.00%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-6.894e-03	1.0000	18.0	0.07%	29.4	0.12%
O2(bZIP)/Corn-O2-ChIP-Seq(GSE63991)/Homer	GCTGACGTGGCA	1e0	-6.302e-03	1.0000	272.0	1.07%	303.7	1.24%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-6.235e-03	1.0000	374.0	1.46%	409.0	1.66%
AT5G25475(ABI3VP1)/col-AT5G25475-DAP-Seq(GSE60143)/Homer	RNNRNCAAGCADNDB	1e0	-5.948e-03	1.0000	2309.0	9.04%	2336.1	9.50%
ABF1(bZIP)/Arabidopsis-ABF1-ChIP-Seq(GSE80564)/Homer	CACGTGGC	1e0	-5.465e-03	1.0000	1979.0	7.75%	2012.2	8.18%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e0	-4.232e-03	1.0000	1957.0	7.66%	1994.5	8.11%
GT3a(Trihelix)/col-GT3a-DAP-Seq(GSE60143)/Homer	WNACACGTGTYWWAW	1e0	-3.935e-03	1.0000	229.0	0.90%	261.1	1.06%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e0	-3.817e-03	1.0000	610.0	2.39%	652.5	2.65%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-3.747e-03	1.0000	432.0	1.69%	471.0	1.92%
bZIP68(bZIP)/col-bZIP68-DAP-Seq(GSE60143)/Homer	WGCCACGTGK	1e0	-3.720e-03	1.0000	594.0	2.33%	636.1	2.59%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e0	-3.490e-03	1.0000	1934.0	7.57%	1974.7	8.03%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-3.461e-03	1.0000	258.0	1.01%	292.3	1.19%
At5g05790(MYBrelated)/col-At5g05790-DAP-Seq(GSE60143)/Homer	AYCTTATC	1e0	-3.443e-03	1.0000	1332.0	5.22%	1377.6	5.60%
HAP3(CCAATHAP3)/col-HAP3-DAP-Seq(GSE60143)/Homer	TGATGGAW	1e0	-2.888e-03	1.0000	589.0	2.31%	633.9	2.58%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e0	-2.434e-03	1.0000	971.0	3.80%	1020.5	4.15%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-2.145e-03	1.0000	697.0	2.73%	745.6	3.03%
AT1G23810(Orphan)/col-AT1G23810-DAP-Seq(GSE60143)/Homer	TTCTAGAAGSTTCTA	1e0	-2.100e-03	1.0000	72.0	0.28%	95.2	0.39%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-2.051e-03	1.0000	2749.0	10.77%	2786.1	11.33%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-2.000e-03	1.0000	355.0	1.39%	396.5	1.61%
TF3A(C2H2)/col-TF3A-DAP-Seq(GSE60143)/Homer	NNDDGAGGAGGWNNN	1e0	-1.976e-03	1.0000	3210.0	12.57%	3240.3	13.18%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.756e-03	1.0000	207.0	0.81%	242.3	0.99%
At1g72010(TCP)/colamp-At1g72010-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e0	-1.547e-03	1.0000	1415.0	5.54%	1469.4	5.97%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-1.149e-03	1.0000	3006.0	11.77%	3048.8	12.40%
GBF3(bZIP)/Arabidopsis-GBF3-ChIP-Seq(GSE80564)/Homer	TGCCACGTSAYC	1e0	-6.910e-04	1.0000	686.0	2.69%	743.1	3.02%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-6.600e-04	1.0000	668.0	2.62%	725.3	2.95%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-6.180e-04	1.0000	3418.0	13.39%	3463.1	14.08%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-6.070e-04	1.0000	595.0	2.33%	651.1	2.65%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-5.570e-04	1.0000	1635.0	6.40%	1700.7	6.92%
BZR1(BZR)/col-BZR1-DAP-Seq(GSE60143)/Homer	NNCRCACGTGCG	1e0	-5.230e-04	1.0000	172.0	0.67%	210.3	0.86%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-4.180e-04	1.0000	446.0	1.75%	500.7	2.04%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-3.540e-04	1.0000	1508.0	5.91%	1578.2	6.42%
At5g08330(TCP)/col-At5g08330-DAP-Seq(GSE60143)/Homer	GGRCCCAC	1e0	-3.210e-04	1.0000	1685.0	6.60%	1757.0	7.14%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e0	-3.060e-04	1.0000	680.0	2.66%	743.6	3.02%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-2.050e-04	1.0000	939.0	3.68%	1010.2	4.11%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e0	-1.630e-04	1.0000	1932.0	7.57%	2011.0	8.18%
bHLH74(bHLH)/col-bHLH74-DAP-Seq(GSE60143)/Homer	DRATCACGTGAB	1e0	-1.320e-04	1.0000	524.0	2.05%	588.1	2.39%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-1.060e-04	1.0000	923.0	3.61%	999.8	4.07%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e0	-7.900e-05	1.0000	2262.0	8.86%	2347.0	9.54%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-6.000e-05	1.0000	774.0	3.03%	851.2	3.46%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-5.000e-05	1.0000	260.0	1.02%	315.9	1.28%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e0	-4.800e-05	1.0000	299.0	1.17%	357.5	1.45%
BAM8(BES1)/col-BAM8-DAP-Seq(GSE60143)/Homer	NNWSACACGTGTSWN	1e0	-4.800e-05	1.0000	210.0	0.82%	261.1	1.06%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-4.700e-05	1.0000	298.0	1.17%	356.7	1.45%
TCP7(TCP)/col-TCP7-DAP-Seq(GSE60143)/Homer	GTGGGSCCCACHHNN	1e0	-4.500e-05	1.0000	1466.0	5.74%	1556.8	6.33%
ATAF1(NAC)/col-ATAF1-DAP-Seq(GSE60143)/Homer	YACGTMAY	1e0	-2.900e-05	1.0000	4455.0	17.45%	4528.7	18.42%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-2.700e-05	1.0000	946.0	3.70%	1034.0	4.20%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-2.500e-05	1.0000	649.0	2.54%	728.1	2.96%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-2.000e-05	1.0000	3778.0	14.79%	3866.7	15.72%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.400e-05	1.0000	2181.0	8.54%	2285.3	9.29%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-2.000e-06	1.0000	589.0	2.31%	679.3	2.76%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-2.000e-06	1.0000	1022.0	4.00%	1129.7	4.59%
TCP20(TCP)/col-TCP20-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e0	-2.000e-06	1.0000	1031.0	4.04%	1139.3	4.63%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.000e-06	1.0000	1037.0	4.06%	1148.3	4.67%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-1.000e-06	1.0000	438.0	1.72%	524.2	2.13%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-0.000e+00	1.0000	2281.0	8.93%	2419.2	9.84%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e0	-0.000e+00	1.0000	442.0	1.73%	533.2	2.17%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-0.000e+00	1.0000	1126.0	4.41%	1252.0	5.09%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-0.000e+00	1.0000	585.0	2.29%	693.2	2.82%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e0	-0.000e+00	1.0000	929.0	3.64%	1055.8	4.29%
ABI5(bZIP)/col-ABI5-DAP-Seq(GSE60143)/Homer	GCCACGTG	1e0	-0.000e+00	1.0000	786.0	3.08%	914.3	3.72%
BIM2(bHLH)/col-BIM2-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNN	1e0	-0.000e+00	1.0000	1471.0	5.76%	1626.0	6.61%
At4g36780(BZR)/col-At4g36780-DAP-Seq(GSE60143)/Homer	NNNNNNCACGTGNNN	1e0	-0.000e+00	1.0000	521.0	2.04%	643.3	2.62%
At4g18890(BZR)/col-At4g18890-DAP-Seq(GSE60143)/Homer	NDBRCACGTGYR	1e0	-0.000e+00	1.0000	303.0	1.19%	410.0	1.67%
At1g78700(BZR)/col-At1g78700-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNNNNN	1e0	-0.000e+00	1.0000	535.0	2.10%	666.0	2.71%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e0	-0.000e+00	1.0000	4455.0	17.45%	4683.4	19.04%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-0.000e+00	1.0000	2831.0	11.09%	3056.3	12.43%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-0.000e+00	1.0000	5360.0	20.99%	5617.3	22.84%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-0.000e+00	1.0000	4344.0	17.01%	4628.3	18.82%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	0.000e+00	1.0000	3602.0	14.11%	3949.6	16.06%
AT4G12670(MYBrelated)/col-AT4G12670-DAP-Seq(GSE60143)/Homer	AGGGTTTAGGGTTTA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%