Information for 11-AGGTCATAGCAT (Motif 10)

C T G A A C T G A T C G A C G T A G T C C G T A A C G T C G T A A C T G A G T C C G T A A C G T
Reverse Opposite:
C G T A A C G T A C T G A G T C A C G T G T C A A C G T A C T G C G T A A T G C A G T C A G C T
p-value:1e-3
log p-value:-8.065e+00
Information Content per bp:1.947
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif0.39%
Number of Background Sequences with motif26.3
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets218.7 +/- 212.8bp
Average Position of motif in Background20007.0 +/- 17121.4bp
Strand Bias (log2 ratio + to - strand density)-3.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:1
Score:0.67
Offset:0
Orientation:forward strand
Alignment:AGGTCATAGCAT
AGGTCA------
 C T G A A C T G A T C G A C G T A G T C C G T A A C G T C G T A A C T G A G T C C G T A A C G T
C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:2
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--AGGTCATAGCAT
TRAGGTCA------
 A C G T A C G T C T G A A C T G A T C G A C G T A G T C C G T A A C G T C G T A A C T G A G T C C G T A A C G T
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:3
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----AGGTCATAGCAT
ATCAAGGTCA------
 A C G T A C G T A C G T A C G T C T G A A C T G A T C G A C G T A G T C C G T A A C G T C G T A A C T G A G T C C G T A A C G T
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:4
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AGGTCATAGCAT
AGRGGTCA------
 A C G T A C G T C T G A A C T G A T C G A C G T A G T C C G T A A C G T C G T A A C T G A G T C C G T A A C G T
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T

ESRRB/MA0141.3/Jaspar

Match Rank:5
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---AGGTCATAGCAT
TCAAGGTCATA----
 A C G T A C G T A C G T C T G A A C T G A T C G A C G T A G T C C G T A A C G T C G T A A C T G A G T C C G T A A C G T
G A C T T A G C G C T A T C G A T C A G A T C G A G C T G A T C C T G A G C A T G C T A A C G T A C G T A C G T A C G T

Esrrg/MA0643.1/Jaspar

Match Rank:6
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---AGGTCATAGCAT
TCAAGGTCAT-----
 A C G T A C G T A C G T C T G A A C T G A T C G A C G T A G T C C G T A A C G T C G T A A C T G A G T C C G T A A C G T
G A C T T A G C C T G A T C G A C A T G A T C G C A G T A G T C C T G A G C A T A C G T A C G T A C G T A C G T A C G T

TOD6/MA0350.1/Jaspar

Match Rank:7
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------AGGTCATAGCAT---
AGGCACAGCTCATCGCGTTTT
 A C G T A C G T A C G T A C G T A C G T A C G T C T G A A C T G A T C G A C G T A G T C C G T A A C G T C G T A A C T G A G T C C G T A A C G T A C G T A C G T A C G T
C G T A A C T G A C T G G T A C C G T A G A T C C G T A A T C G T A G C A C G T A G T C C G T A A C G T A G T C C A T G T A G C T A C G G A C T G A C T G C A T C A G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---AGGTCATAGCAT
TCAAGGTCAN-----
 A C G T A C G T A C G T C T G A A C T G A T C G A C G T A G T C C G T A A C G T C G T A A C T G A G T C C G T A A C G T
A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C A C G T A C G T A C G T A C G T A C G T

CHA4(MacIsaac)/Yeast

Match Rank:9
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:AGGTCATAGCAT
--CTCATCGCA-
 C T G A A C T G A T C G A C G T A G T C C G T A A C G T C G T A A C T G A G T C C G T A A C G T
A C G T A C G T G A T C C A G T A T G C T C G A A G C T A G T C A C T G A G T C C G T A A C G T

DOT6/MA0351.1/Jaspar

Match Rank:10
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------AGGTCATAGCAT---
TTCTGCACCTCATCGCATCCT
 A C G T A C G T A C G T A C G T A C G T A C G T C T G A A C T G A T C G A C G T A G T C C G T A A C G T C G T A A C T G A G T C C G T A A C G T A C G T A C G T A C G T
C G A T A C G T A G T C A C G T C A T G A G T C C G T A A T G C T A G C A C G T A T G C C G T A C A G T A G T C C A T G T G A C T G C A G A C T A T G C A G T C C A G T