Information for 12-CTTGGCACTTTA (Motif 11)

A G T C A C G T A C G T A C T G A C T G A G T C C G T A A G T C A C G T A C G T A C G T C G T A
Reverse Opposite:
A C G T C G T A C G T A C G T A A C T G C G A T A C T G A G T C A G T C C G T A C G T A A C T G
p-value:1e-3
log p-value:-7.019e+00
Information Content per bp:1.965
Number of Target Sequences with motif33.0
Percentage of Target Sequences with motif0.46%
Number of Background Sequences with motif37.1
Percentage of Background Sequences with motif0.21%
Average Position of motif in Targets2211.2 +/- 2810.1bp
Average Position of motif in Background24733.3 +/- 20146.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RIM101/Literature(Harbison)/Yeast

Match Rank:1
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:CTTGGCACTTTA
CTTGGCA-----
 A G T C A C G T A C G T A C T G A C T G A G T C C G T A A G T C A C G T A C G T A C G T C G T A
A G T C A C G T A C G T A C T G A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T

RIM101(MacIsaac)/Yeast

Match Rank:2
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:CTTGGCACTTTA
CTTGGCA-----
 A G T C A C G T A C G T A C T G A C T G A G T C C G T A A G T C A C G T A C G T A C G T C G T A
A G T C A C G T A C G T A C T G A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T

RIM101/MA0368.1/Jaspar

Match Rank:3
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:CTTGGCACTTTA
CTTGGCG-----
 A G T C A C G T A C G T A C T G A C T G A G T C C G T A A G T C A C G T A C G T A C G T C G T A
A G T C A C G T A C G T A C T G A C T G A G T C C T A G A C G T A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:4
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-CTTGGCACTTTA
NNTTGGCANN---
 A C G T A G T C A C G T A C G T A C T G A C T G A G T C C G T A A G T C A C G T A C G T A C G T C G T A
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:CTTGGCACTTTA
NTTGGCANN---
 A G T C A C G T A C G T A C T G A C T G A G T C C G T A A G T C A C G T A C G T A C G T C G T A
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T

AT1G69570(C2C2dof)/col-AT1G69570-DAP-Seq(GSE60143)/Homer

Match Rank:6
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:CTTGGCACTTTA-
---DDCACTTTTW
 A G T C A C G T A C G T A C T G A C T G A G T C C G T A A G T C A C G T A C G T A C G T C G T A A C G T
A C G T A C G T A C G T C G A T C A T G A G T C T C G A A G T C A C G T A C G T A C G T G C A T G C A T

NFIC/MA0161.1/Jaspar

Match Rank:7
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CTTGGCACTTTA
-TTGGCA-----
 A G T C A C G T A C G T A C T G A C T G A G T C C G T A A G T C A C G T A C G T A C G T C G T A
A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CTTGGCACTTTA
CTTGGCAA----
 A G T C A C G T A C G T A C T G A C T G A G T C C G T A A G T C A C G T A C G T A C G T C G T A
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T

CDF3/MA0974.1/Jaspar

Match Rank:9
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:CTTGGCACTTTA-
----NCACTTTTT
 A G T C A C G T A C G T A C T G A C T G A G T C C G T A A G T C A C G T A C G T A C G T C G T A A C G T
A C G T A C G T A C G T A C G T C A T G G A T C T C G A A G T C A G C T C G A T C A G T G C A T G A C T

byn/dmmpmm(Pollard)/fly

Match Rank:10
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CTTGGCACTTTA
--TCGCACTT--
 A G T C A C G T A C G T A C T G A C T G A G T C C G T A A G T C A C G T A C G T A C G T C G T A
A C G T A C G T C G A T G A T C C A T G A G T C C T G A G T A C G C A T C G A T A C G T A C G T