Information for 15-TCATGCCTKATT (Motif 14)

A G C T T G A C C G T A C G A T C A T G G T A C T G A C C G A T C A G T T C G A G C A T G C A T
Reverse Opposite:
C G T A C G T A A G C T G T C A G C T A A C T G C A T G G T A C G C T A G C A T A C T G T C G A
p-value:1e0
log p-value:-2.191e-01
Information Content per bp:1.598
Number of Target Sequences with motif50.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif140.6
Percentage of Background Sequences with motif0.79%
Average Position of motif in Targets1297.2 +/- 583.8bp
Average Position of motif in Background25587.9 +/- 20974.9bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax6/MA0069.1/Jaspar

Match Rank:1
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TCATGCCTKATT-
TTCACGCATGAGTT
 A C G T A G C T T G A C C G T A C G A T C A T G G T A C T G A C C G A T C A G T T C G A G C A T G C A T A C G T
A C G T G A C T G A T C G T C A G A T C C A T G A T G C C G T A A G C T A T C G C T G A T A C G A G C T C A G T

OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TCATGCCTKATT---
TCATGAATWATTCAT
 A G C T T G A C C G T A C G A T C A T G G T A C T G A C C G A T C A G T T C G A G C A T G C A T A C G T A C G T A C G T
G A C T G A T C G C T A C G A T C T A G G T C A C G T A C G A T G C A T C G T A G C A T C A G T A G T C G T C A C A G T

PAX1/MA0779.1/Jaspar

Match Rank:3
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--TCATGCCTKATT---
CGTCACGCATGACTGCA
 A C G T A C G T A G C T T G A C C G T A C G A T C A T G G T A C T G A C C G A T C A G T T C G A G C A T G C A T A C G T A C G T A C G T
A T G C C A T G G C A T G A T C T G C A G A T C C A T G A T G C G C T A G A C T A T C G T C G A T A G C G A C T C A T G T G A C G T C A

PAX9/MA0781.1/Jaspar

Match Rank:4
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--TCATGCCTKATT---
CGTCACGCATGACTGCA
 A C G T A C G T A G C T T G A C C G T A C G A T C A T G G T A C T G A C C G A T C A G T T C G A G C A T G C A T A C G T A C G T A C G T
A T G C A C T G G C A T A G T C T G C A A G T C A C T G A T G C G C T A G A C T A T C G C T G A T A G C G A C T C A T G T G A C G T C A

JDP2/MA0655.1/Jaspar

Match Rank:5
Score:0.58
Offset:2
Orientation:forward strand
Alignment:TCATGCCTKATT
--ATGACTCAT-
 A G C T T G A C C G T A C G A T C A T G G T A C T G A C C G A T C A G T T C G A G C A T G C A T
A C G T A C G T T C G A G A C T A C T G C G T A T A G C C A G T G T A C C G T A G A C T A C G T

NFE2/MA0841.1/Jaspar

Match Rank:6
Score:0.58
Offset:1
Orientation:forward strand
Alignment:TCATGCCTKATT
-CATGACTCATC
 A G C T T G A C C G T A C G A T C A T G G T A C T G A C C G A T C A G T T C G A G C A T G C A T
A C G T T G A C T C G A G A C T A C T G G T C A T A G C A G C T G A T C T G C A A G C T A T G C

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:7
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TCATGCCTKATT--
ACCGTGACTAATTNN
 A C G T A G C T T G A C C G T A C G A T C A T G G T A C T G A C C G A T C A G T T C G A G C A T G C A T A C G T A C G T
C G T A T A G C A G T C C T A G C A G T C T A G C T G A G T A C G C A T T C G A C G T A G C A T A G C T C T A G T C G A

ap/dmmpmm(Pollard)/fly

Match Rank:8
Score:0.57
Offset:7
Orientation:reverse strand
Alignment:TCATGCCTKATT-
-------TNATTA
 A G C T T G A C C G T A C G A T C A T G G T A C T G A C C G A T C A G T T C G A G C A T G C A T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C G A T T C G A A C G T A C G T T C G A

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:9
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TCATGCCTKATT--
GTCATGCHTGRCTGS
 A C G T A G C T T G A C C G T A C G A T C A T G G T A C T G A C C G A T C A G T T C G A G C A T G C A T A C G T A C G T
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

MYB116(MYB)/colamp-MYB116-DAP-Seq(GSE60143)/Homer

Match Rank:10
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:TCATGCCTKATT
--NTGCCTAACT
 A G C T T G A C C G T A C G A T C A T G G T A C T G A C C G A T C A G T T C G A G C A T G C A T
A C G T A C G T G A T C G A C T T C A G A G T C A G T C C G A T C G T A G T C A G A T C G C A T