Left reads: Input : 42802386 Mapped : 38221159 (89.3% of input) of these: 612672 ( 1.6%) have multiple alignments (21996 have >20) Right reads: Input : 42802386 Mapped : 37776356 (88.3% of input) of these: 601176 ( 1.6%) have multiple alignments (22031 have >20) 88.8% overall read mapping rate. Aligned pairs: 37165727 of these: 583949 ( 1.6%) have multiple alignments 232915 ( 0.6%) are discordant alignments 86.3% concordant pair alignment rate.