Left reads: Input : 40922685 Mapped : 33006505 (80.7% of input) of these: 497500 ( 1.5%) have multiple alignments (18825 have >20) Right reads: Input : 40922685 Mapped : 32589429 (79.6% of input) of these: 488126 ( 1.5%) have multiple alignments (18852 have >20) 80.1% overall read mapping rate. Aligned pairs: 32012081 of these: 474248 ( 1.5%) have multiple alignments 226108 ( 0.7%) are discordant alignments 77.7% concordant pair alignment rate.