Left reads: Input : 36456089 Mapped : 29653055 (81.3% of input) of these: 446776 ( 1.5%) have multiple alignments (19823 have >20) Right reads: Input : 36456089 Mapped : 29184520 (80.1% of input) of these: 436358 ( 1.5%) have multiple alignments (19834 have >20) 80.7% overall read mapping rate. Aligned pairs: 28644379 of these: 423398 ( 1.5%) have multiple alignments 244789 ( 0.9%) are discordant alignments 77.9% concordant pair alignment rate.