Left reads: Input : 34331705 Mapped : 31012889 (90.3% of input) of these: 621740 ( 2.0%) have multiple alignments (18858 have >20) Right reads: Input : 34331705 Mapped : 30619467 (89.2% of input) of these: 609712 ( 2.0%) have multiple alignments (18879 have >20) 89.8% overall read mapping rate. Aligned pairs: 30090307 of these: 592991 ( 2.0%) have multiple alignments 278871 ( 0.9%) are discordant alignments 86.8% concordant pair alignment rate.