Left reads: Input : 31400418 Mapped : 29324144 (93.4% of input) of these: 637591 ( 2.2%) have multiple alignments (19249 have >20) Right reads: Input : 31400418 Mapped : 28925245 (92.1% of input) of these: 625087 ( 2.2%) have multiple alignments (19256 have >20) 92.8% overall read mapping rate. Aligned pairs: 28349602 of these: 604124 ( 2.1%) have multiple alignments 254537 ( 0.9%) are discordant alignments 89.5% concordant pair alignment rate.