Left reads: Input : 44124059 Mapped : 41187910 (93.3% of input) of these: 797698 ( 1.9%) have multiple alignments (30685 have >20) Right reads: Input : 44124059 Mapped : 40766378 (92.4% of input) of these: 785858 ( 1.9%) have multiple alignments (30685 have >20) 92.9% overall read mapping rate. Aligned pairs: 39941848 of these: 759044 ( 1.9%) have multiple alignments 352452 ( 0.9%) are discordant alignments 89.7% concordant pair alignment rate.