Left reads: Input : 40256295 Mapped : 34299117 (85.2% of input) of these: 756180 ( 2.2%) have multiple alignments (5512 have >20) Right reads: Input : 40256295 Mapped : 33944804 (84.3% of input) of these: 742325 ( 2.2%) have multiple alignments (5523 have >20) 84.8% overall read mapping rate. Aligned pairs: 33390119 of these: 727617 ( 2.2%) have multiple alignments 134714 ( 0.4%) are discordant alignments 82.6% concordant pair alignment rate.