Left reads: Input : 35308713 Mapped : 29783163 (84.4% of input) of these: 572828 ( 1.9%) have multiple alignments (6545 have >20) Right reads: Input : 35308713 Mapped : 29424340 (83.3% of input) of these: 561143 ( 1.9%) have multiple alignments (6548 have >20) 83.8% overall read mapping rate. Aligned pairs: 28943234 of these: 548632 ( 1.9%) have multiple alignments 158627 ( 0.5%) are discordant alignments 81.5% concordant pair alignment rate.