Left reads: Input : 38566746 Mapped : 35956000 (93.2% of input) of these: 872623 ( 2.4%) have multiple alignments (28965 have >20) Right reads: Input : 38566746 Mapped : 35554419 (92.2% of input) of these: 875399 ( 2.5%) have multiple alignments (28984 have >20) 92.7% overall read mapping rate. Aligned pairs: 34866474 of these: 832038 ( 2.4%) have multiple alignments 379420 ( 1.1%) are discordant alignments 89.4% concordant pair alignment rate.