Left reads: Input : 44598074 Mapped : 41256049 (92.5% of input) of these: 914250 ( 2.2%) have multiple alignments (39059 have >20) Right reads: Input : 44598074 Mapped : 40736260 (91.3% of input) of these: 923851 ( 2.3%) have multiple alignments (39091 have >20) 91.9% overall read mapping rate. Aligned pairs: 39900999 of these: 863998 ( 2.2%) have multiple alignments 460738 ( 1.2%) are discordant alignments 88.4% concordant pair alignment rate.