### STAR --runMode genomeGenerate --runThreadN 24 --genomeDir Genome_Index --genomeFastaFiles /home/ckern/FAANG_Project/Chicken_Ensembl/Genome/Galgal5.fa --sjdbGTFfile Genome/Galgal5.90.gtf versionGenome 20201 genomeFastaFiles /home/ckern/FAANG_Project/Chicken_Ensembl/Genome/Galgal5.fa genomeSAindexNbases 14 genomeChrBinNbits 18 genomeSAsparseD 1 sjdbOverhang 100 sjdbFileChrStartEnd - sjdbGTFfile Genome/Galgal5.90.gtf sjdbGTFchrPrefix - sjdbGTFfeatureExon exon sjdbGTFtagExonParentTranscript transcript_id sjdbGTFtagExonParentGene gene_id sjdbInsertSave Basic