Index of /~ckern/FAANG_Project/Chicken_2017/Logs

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]assay_boxplot.assay=DNaseSeq.out2017-10-25 11:52 1.0K 
[ ]assay_boxplot.assay=H3K4me1.out2017-10-24 16:40 1.1K 
[ ]assay_boxplot.assay=H3K4me3.out2017-10-24 16:40 1.0K 
[ ]assay_boxplot.assay=H3K27ac.out2017-10-24 16:40 1.0K 
[ ]assay_boxplot.assay=H3K27me3.out2017-10-24 16:40 1.3K 
[ ]assay_boxplot.mark=H3K27me3_IDR.out2017-11-06 13:44 2.9K 
[ ]assign_states_to_tss.type=Bam,states=10,sample=Lung_A.out2017-11-18 11:56 1.4K 
[ ]assign_states_to_tss.type=Bam,states=10,sample=Lung_B.out2017-11-18 12:25 1.4K 
[ ]assign_states_to_tss.type=Bed,states=10,sample=Lung_A.out2017-11-18 12:31 1.4K 
[ ]assign_states_to_tss.type=Bed,states=10,sample=Lung_B.out2017-11-18 12:28 1.3K 
[ ]bam_compare.library=H3K4me1_Lung_A.out2017-11-30 12:45 2.2K 
[ ]bam_compare.library=H3K4me1_Lung_B.out2017-10-19 19:26 1.6K 
[ ]bam_compare.library=H3K4me3_Lung_A.out2017-11-30 12:44 2.2K 
[ ]bam_compare.library=H3K4me3_Lung_B.out2017-10-19 19:25 1.6K 
[ ]bam_compare.library=H3K27ac_Lung_A.out2017-11-30 12:43 2.2K 
[ ]bam_compare.library=H3K27ac_Lung_B.out2017-10-19 19:24 1.6K 
[ ]bam_compare.library=H3K27me3_Lung_A.out2017-11-30 12:45 2.2K 
[ ]bam_compare.library=H3K27me3_Lung_B.out2017-10-19 19:24 1.6K 
[ ]bam_coverage.library=DNaseSeq_Lung_A.out2017-11-30 12:43 2.1K 
[ ]bam_coverage.library=DNaseSeq_Lung_B.out2017-10-24 17:14 1.8K 
[ ]bam_coverage.library=H3K4me1_Lung_A.out2017-10-19 19:24 1.5K 
[ ]bam_coverage.library=H3K4me1_Lung_B.out2017-10-19 19:24 1.5K 
[ ]bam_coverage.library=H3K4me3_Lung_A.out2017-10-19 19:24 1.5K 
[ ]bam_coverage.library=H3K4me3_Lung_B.out2017-10-19 19:24 1.5K 
[ ]bam_coverage.library=H3K27ac_Lung_A.out2017-10-19 19:24 1.5K 
[ ]bam_coverage.library=H3K27ac_Lung_B.out2017-10-19 19:24 1.5K 
[ ]bam_coverage.library=H3K27me3_Lung_A.out2017-10-19 19:25 1.5K 
[ ]bam_coverage.library=H3K27me3_Lung_B.out2017-10-19 19:24 1.5K 
[ ]bam_coverage.library=Input_Lung_A.out2017-10-19 19:25 1.5K 
[ ]bam_coverage.library=Input_Lung_B.out2017-10-19 19:24 1.5K 
[ ]bam_coverage.library=RNASeq_Lung_A.out2017-10-24 16:09 1.8K 
[ ]bam_coverage.library=RNASeq_Lung_B.out2017-10-24 16:08 1.8K 
[ ]bam_to_tagalign.library=DNaseSeq_Lung_A.out2017-11-17 16:34 1.4K 
[ ]bam_to_tagalign.library=DNaseSeq_Lung_B.out2017-11-17 16:35 1.4K 
[ ]bam_to_tagalign.library=H3K4me1_Lung_A.out2017-11-06 13:14 1.3K 
[ ]bam_to_tagalign.library=H3K4me1_Lung_B.out2017-11-06 13:15 1.3K 
[ ]bam_to_tagalign.library=H3K4me3_Lung_A.out2017-10-30 17:50 1.4K 
[ ]bam_to_tagalign.library=H3K4me3_Lung_B.out2017-10-30 17:50 1.4K 
[ ]bam_to_tagalign.library=H3K27ac_Lung_A.out2017-10-30 17:50 1.4K 
[ ]bam_to_tagalign.library=H3K27ac_Lung_B.out2017-10-30 17:50 1.4K 
[ ]bam_to_tagalign.library=H3K27me3_Lung_A.out2017-11-06 13:14 1.3K 
[ ]bam_to_tagalign.library=H3K27me3_Lung_B.out2017-11-06 13:15 1.3K 
[ ]bam_to_tagalign.library=Input_Lung_A.out2017-10-30 17:50 1.4K 
[ ]bam_to_tagalign.library=Input_Lung_B.out2017-10-30 17:50 1.4K 
[ ]binarize_bam..out2017-11-17 15:14 5.7K 
[ ]binarize_data.type=Bam.out2017-11-17 17:34 5.9K 
[ ]binarize_data.type=Bed.out2017-11-17 17:05 6.0K 
[ ]binarize_data.type=IDR.out2017-11-17 16:49 5.9K 
[ ]bwa_index..out2017-10-16 19:37 2.8K 
[ ]bwa_mem.library=H3K4me1_Lung_A.out2017-10-17 19:41 1.6K 
[ ]bwa_mem.library=H3K4me1_Lung_B.out2017-10-17 19:41 1.6K 
[ ]bwa_mem.library=H3K4me3_Lung_A.out2017-10-17 19:40 1.6K 
[ ]bwa_mem.library=H3K4me3_Lung_B.out2017-10-17 19:41 1.6K 
[ ]bwa_mem.library=H3K27ac_Lung_A.out2017-10-17 19:40 1.6K 
[ ]bwa_mem.library=H3K27ac_Lung_B.out2017-10-17 19:45 1.6K 
[ ]bwa_mem.library=H3K27me3_Lung_A.out2017-10-19 17:13 1.6K 
[ ]bwa_mem.library=H3K27me3_Lung_B.out2017-10-17 19:40 1.5K 
[ ]bwa_mem.library=Input_Lung_A.out2017-10-19 17:13 1.7K 
[ ]bwa_mem.library=Input_Lung_B.out2017-10-17 19:41 1.5K 
[ ]bwa_mem_paired.library=DNaseSeq_Lung_A.out2017-10-24 16:30 34K 
[ ]bwa_mem_paired.library=DNaseSeq_Lung_B.out2017-10-24 16:26 20K 
[ ]calculate_jaccard.assay=DNaseSeq.out2017-10-25 11:51 1.0K 
[ ]calculate_jaccard.assay=H3K4me1.out2017-10-24 16:05 1.0K 
[ ]calculate_jaccard.assay=H3K4me3.out2017-10-19 22:49 1.0K 
[ ]calculate_jaccard.assay=H3K27ac.out2017-10-19 22:49 1.0K 
[ ]calculate_jaccard.assay=H3K27me3.out2017-10-24 16:05 1.1K 
[ ]calculate_jaccard_idr.prefix=H3K4me1_Lung.out2017-11-06 15:17 1.3K 
[ ]calculate_jaccard_idr.prefix=H3K4me3_Lung.out2017-11-07 09:59 1.4K 
[ ]call_broad_idr_peaks.idrprefix=DNaseSeq_Lung_A.out2017-11-17 16:44 7.2K 
[ ]call_broad_idr_peaks.idrprefix=DNaseSeq_Lung_B.out2017-11-17 16:42 6.0K 
[ ]call_broad_idr_peaks.idrprefix=H3K4me1_Lung.Pooled.out2017-11-06 15:12 8.0K 
[ ]call_broad_idr_peaks.idrprefix=H3K4me1_Lung.Poolr1.out2017-11-06 15:09 7.3K 
[ ]call_broad_idr_peaks.idrprefix=H3K4me1_Lung.Poolr2.out2017-11-06 15:11 7.3K 
[ ]call_broad_idr_peaks.idrprefix=H3K4me1_Lung_A.out2017-11-06 15:05 6.6K 
[ ]call_broad_idr_peaks.idrprefix=H3K4me1_Lung_B.out2017-11-06 15:08 6.5K 
[ ]call_broad_idr_peaks.idrprefix=H3K27me3_Lung.Pooled.out2017-11-06 13:26 7.8K 
[ ]call_broad_idr_peaks.idrprefix=H3K27me3_Lung.Poolr1.out2017-11-06 13:26 7.1K 
[ ]call_broad_idr_peaks.idrprefix=H3K27me3_Lung.Poolr2.out2017-11-06 13:25 7.1K 
[ ]call_broad_idr_peaks.idrprefix=H3K27me3_Lung_A.out2017-11-17 16:34 6.5K 
[ ]call_broad_idr_peaks.idrprefix=H3K27me3_Lung_B.out2017-11-17 16:34 6.4K 
[ ]call_broad_peaks.library=DNaseSeq_Lung_A.out2017-10-24 17:38 7.0K 
[ ]call_broad_peaks.library=DNaseSeq_Lung_B.out2017-10-24 17:17 5.9K 
[ ]call_broad_peaks.library=H3K4me1_Lung_A.out2017-10-19 19:57 6.3K 
[ ]call_broad_peaks.library=H3K4me1_Lung_B.out2017-10-19 19:55 6.2K 
[ ]call_broad_peaks.library=H3K27me3_Lung_A.out2017-10-19 19:56 6.2K 
[ ]call_broad_peaks.library=H3K27me3_Lung_B.out2017-10-19 19:55 6.1K 
[ ]call_narrow_idr_peaks.idrprefix=H3K4me3_Lung.Pooled.out2017-11-06 15:36 7.0K 
[ ]call_narrow_idr_peaks.idrprefix=H3K4me3_Lung.Poolr1.out2017-11-06 15:41 6.5K 
[ ]call_narrow_idr_peaks.idrprefix=H3K4me3_Lung.Poolr2.out2017-11-06 15:36 6.5K 
[ ]call_narrow_idr_peaks.idrprefix=H3K4me3_Lung_A.out2017-11-06 15:31 5.7K 
[ ]call_narrow_idr_peaks.idrprefix=H3K4me3_Lung_B.out2017-11-06 15:32 5.6K 
[ ]call_narrow_idr_peaks.idrprefix=H3K27ac_Lung.Pooled.out2017-10-30 17:59 6.9K 
[ ]call_narrow_idr_peaks.idrprefix=H3K27ac_Lung.Poolr1.out2017-10-30 18:01 6.2K 
[ ]call_narrow_idr_peaks.idrprefix=H3K27ac_Lung.Poolr2.out2017-10-30 17:58 6.3K 
[ ]call_narrow_idr_peaks.idrprefix=H3K27ac_Lung_A.out2017-10-30 17:54 5.6K 
[ ]call_narrow_idr_peaks.idrprefix=H3K27ac_Lung_B.out2017-10-30 17:53 5.4K 
[ ]call_narrow_peaks.library=H3K4me3_Lung_A.out2017-10-19 19:56 5.4K 
[ ]call_narrow_peaks.library=H3K4me3_Lung_B.out2017-10-19 19:54 5.3K 
[ ]call_narrow_peaks.library=H3K27ac_Lung_A.out2017-10-19 19:56 5.5K 
[ ]call_narrow_peaks.library=H3K27ac_Lung_B.out2017-10-19 19:54 5.3K 
[ ]chromosome_lengths..out2017-11-17 14:38 1.3K 
[ ]combine_peaks.assay=DNaseSeq,tissue=Lung.out2017-10-25 12:02 1.3K 
[ ]combine_peaks.assay=H3K4me1,tissue=Lung.out2017-10-24 16:08 1.3K 
[ ]combine_peaks.assay=H3K4me3,tissue=Lung.out2017-10-24 16:08 1.3K 
[ ]combine_peaks.assay=H3K27ac,tissue=Lung.out2017-10-24 16:40 1.3K 
[ ]combine_peaks.assay=H3K27me3,tissue=Lung.out2017-10-24 16:07 1.3K 
[ ]compute_matrix.tissue=Lung,rep=A.out2017-11-30 17:47 593K 
[ ]correlation_graph.assaycomp=DNaseSeq,correlation=Pearson.out2017-10-25 11:52 1.7K 
[ ]correlation_graph.assaycomp=DNaseSeq,correlation=Spearman.out2017-10-25 11:52 1.6K 
[ ]correlation_graph.assaycomp=H3K4me1,correlation=Pearson.out2017-10-19 19:46 1.4K 
[ ]correlation_graph.assaycomp=H3K4me1,correlation=Spearman.out2017-10-19 19:46 1.5K 
[ ]correlation_graph.assaycomp=H3K4me1_vs_Input,correlation=Pearson.out2017-10-19 19:46 1.5K 
[ ]correlation_graph.assaycomp=H3K4me1_vs_Input,correlation=Spearman.out2017-10-19 19:46 1.5K 
[ ]correlation_graph.assaycomp=H3K4me3,correlation=Pearson.out2017-10-19 19:46 1.5K 
[ ]correlation_graph.assaycomp=H3K4me3,correlation=Spearman.out2017-10-19 19:46 1.5K 
[ ]correlation_graph.assaycomp=H3K4me3_vs_Input,correlation=Pearson.out2017-10-19 19:47 1.5K 
[ ]correlation_graph.assaycomp=H3K4me3_vs_Input,correlation=Spearman.out2017-10-19 19:47 1.5K 
[ ]correlation_graph.assaycomp=H3K27ac,correlation=Pearson.out2017-10-19 19:46 1.5K 
[ ]correlation_graph.assaycomp=H3K27ac,correlation=Spearman.out2017-10-19 19:46 1.5K 
[ ]correlation_graph.assaycomp=H3K27ac_vs_Input,correlation=Pearson.out2017-10-19 19:46 1.5K 
[ ]correlation_graph.assaycomp=H3K27ac_vs_Input,correlation=Spearman.out2017-10-19 19:46 1.5K 
[ ]correlation_graph.assaycomp=H3K27me3,correlation=Pearson.out2017-10-19 19:46 1.5K 
[ ]correlation_graph.assaycomp=H3K27me3,correlation=Spearman.out2017-10-19 19:46 1.5K 
[ ]correlation_graph.assaycomp=H3K27me3_vs_Input,correlation=Pearson.out2017-10-19 19:46 1.5K 
[ ]correlation_graph.assaycomp=H3K27me3_vs_Input,correlation=Spearman.out2017-10-19 19:46 1.5K 
[ ]correlation_graph.assaycomp=Input,correlation=Pearson.out2017-10-19 19:46 1.4K 
[ ]correlation_graph.assaycomp=Input,correlation=Spearman.out2017-10-19 19:46 1.5K 
[ ]correlation_graph.assaycomp=RNASeq,correlation=Pearson.out2017-10-24 16:41 1.7K 
[ ]correlation_graph.assaycomp=RNASeq,correlation=Spearman.out2017-10-24 16:41 1.6K 
[ ]create_pooled.assay=H3K4me1,tissue=Lung.out2017-11-06 13:17 1.3K 
[ ]create_pooled.assay=H3K4me3,tissue=Lung.out2017-10-30 17:51 1.4K 
[ ]create_pooled.assay=H3K27ac,tissue=Lung.out2017-10-30 17:51 1.4K 
[ ]create_pooled.assay=H3K27me3,tissue=Lung.out2017-11-06 13:17 1.3K 
[ ]create_pooled.assay=Input,tissue=Lung.out2017-10-30 17:51 1.4K 
[ ]create_pooled_pr1.assay=H3K4me1,tissue=Lung.out2017-11-06 13:18 1.4K 
[ ]create_pooled_pr1.assay=H3K4me3,tissue=Lung.out2017-10-30 17:55 1.4K 
[ ]create_pooled_pr1.assay=H3K27ac,tissue=Lung.out2017-10-30 17:55 1.3K 
[ ]create_pooled_pr1.assay=H3K27me3,tissue=Lung.out2017-11-06 13:18 1.4K 
[ ]create_pooled_pr2.assay=H3K4me1,tissue=Lung.out2017-11-06 13:18 1.4K 
[ ]create_pooled_pr2.assay=H3K4me3,tissue=Lung.out2017-10-30 17:54 1.4K 
[ ]create_pooled_pr2.assay=H3K27ac,tissue=Lung.out2017-10-30 17:52 1.4K 
[ ]create_pooled_pr2.assay=H3K27me3,tissue=Lung.out2017-11-06 13:18 1.3K 
[ ]create_pseudoreplicates.library=H3K4me1_Lung_A.out2017-11-06 13:15 1.7K 
[ ]create_pseudoreplicates.library=H3K4me1_Lung_B.out2017-11-06 13:17 1.7K 
[ ]create_pseudoreplicates.library=H3K4me3_Lung_A.out2017-10-30 17:51 1.7K 
[ ]create_pseudoreplicates.library=H3K4me3_Lung_B.out2017-10-30 17:51 1.7K 
[ ]create_pseudoreplicates.library=H3K27ac_Lung_A.out2017-10-30 17:51 1.7K 
[ ]create_pseudoreplicates.library=H3K27ac_Lung_B.out2017-10-30 17:51 1.7K 
[ ]create_pseudoreplicates.library=H3K27me3_Lung_A.out2017-11-06 13:15 1.7K 
[ ]create_pseudoreplicates.library=H3K27me3_Lung_B.out2017-11-06 13:17 1.7K 
[ ]deeptools_jsd.library=DNaseSeq_Lung_A.out2017-10-24 17:30 1.5K 
[ ]deeptools_jsd.library=DNaseSeq_Lung_B.out2017-10-24 17:12 1.5K 
[ ]deeptools_jsd.library=H3K4me1_Lung_A.out2017-10-19 19:23 1.2K 
[ ]deeptools_jsd.library=H3K4me1_Lung_B.out2017-10-19 19:24 1.2K 
[ ]deeptools_jsd.library=H3K4me3_Lung_A.out2017-11-20 10:14 11K 
[ ]deeptools_jsd.library=H3K4me3_Lung_B.out2017-10-19 19:24 1.2K 
[ ]deeptools_jsd.library=H3K27ac_Lung_A.out2017-10-19 19:24 1.2K 
[ ]deeptools_jsd.library=H3K27ac_Lung_B.out2017-10-19 19:23 1.2K 
[ ]deeptools_jsd.library=H3K27me3_Lung_A.out2017-10-19 19:23 1.2K 
[ ]deeptools_jsd.library=H3K27me3_Lung_B.out2017-10-19 19:25 1.2K 
[ ]deeptools_metrics.sample=Lung_A.out2017-10-17 14:54 1.2K 
[ ]deeptools_metrics.sample=Lung_B.out2017-10-17 14:50 1.2K 
[ ]filter_alignments.library=DNaseSeq_Lung_A.out2017-10-24 16:53 1.2K 
[ ]filter_alignments.library=DNaseSeq_Lung_B.out2017-10-24 16:44 1.2K 
[ ]filter_alignments.library=H3K4me1_Lung_A.out2017-10-17 19:46 936  
[ ]filter_alignments.library=H3K4me1_Lung_B.out2017-10-17 19:47 936  
[ ]filter_alignments.library=H3K4me3_Lung_A.out2017-10-17 20:02 936  
[ ]filter_alignments.library=H3K4me3_Lung_B.out2017-10-17 19:47 936  
[ ]filter_alignments.library=H3K27ac_Lung_A.out2017-10-17 19:44 936  
[ ]filter_alignments.library=H3K27ac_Lung_B.out2017-10-17 19:48 936  
[ ]filter_alignments.library=H3K27me3_Lung_A.out2017-10-19 17:16 956  
[ ]filter_alignments.library=H3K27me3_Lung_B.out2017-10-17 19:44 937  
[ ]filter_alignments.library=Input_Lung_A.out2017-10-19 17:18 950  
[ ]filter_alignments.library=Input_Lung_B.out2017-10-17 19:44 953  
[ ]filter_star.library=DNaseSeq_Lung_A.out2017-10-19 19:53 1.0K 
[ ]filter_star.library=DNaseSeq_Lung_B.out2017-10-19 17:36 903  
[ ]filter_star.library=RNASeq_Lung_A.out2017-10-19 20:06 1.0K 
[ ]filter_star.library=RNASeq_Lung_B.out2017-10-19 20:02 1.0K 
[ ]final_peak_list.assay=H3K4me3,tissue=Lung.out2017-11-06 15:45 1.4K 
[ ]final_peak_list.assay=H3K27ac,tissue=Lung.out2017-10-30 18:01 1.3K 
[ ]final_peak_list_broad.assay=H3K4me1,tissue=Lung.out2017-11-06 15:13 1.3K 
[ ]final_peak_list_broad.assay=H3K27me3,tissue=Lung.out2017-11-06 13:27 1.3K 
[ ]fold_enrichment.library=DNaseSeq_Lung_A.out2017-10-25 11:59 1.7K 
[ ]fold_enrichment.library=H3K4me1_Lung_A.out2017-10-19 23:04 1.6K 
[ ]fold_enrichment.library=H3K4me3_Lung_A.out2017-10-19 23:03 1.6K 
[ ]fold_enrichment.library=H3K27ac_Lung_A.out2017-10-19 23:03 1.6K 
[ ]fold_enrichment.library=H3K27me3_Lung_A.out2017-10-19 22:58 1.6K 
[ ]fold_enrichment.library=H3K27me3_Lung_B.out2017-10-18 00:27 1.4K 
[ ]frip_graph.assay=DNaseSeq,tissue=Lung.out2017-10-25 12:06 1.6K 
[ ]frip_graph.assay=H3K4me1,tissue=Lung.out2017-10-24 16:40 1.6K 
[ ]frip_graph.assay=H3K4me3,tissue=Lung.out2017-10-24 16:41 1.6K 
[ ]frip_graph.assay=H3K27ac,tissue=Lung.out2017-10-24 16:41 1.6K 
[ ]frip_graph.assay=H3K27me3,tissue=Lung.out2017-10-24 16:40 1.5K 
[ ]idr_frip_graph.assay=H3K4me1,tissue=Lung.out2017-11-06 13:29 1.8K 
[ ]idr_frip_graph.assay=H3K4me3,tissue=Lung.out2017-10-30 18:03 1.9K 
[ ]idr_frip_graph.assay=H3K27ac,tissue=Lung.out2017-10-30 18:03 1.9K 
[ ]idr_frip_graph.assay=H3K27me3,tissue=Lung.out2017-11-06 13:34 1.8K 
[ ]index_bam.library=DNaseSeq_Lung_A.out2017-10-24 17:28 1.0K 
[ ]index_bam.library=DNaseSeq_Lung_B.out2017-10-24 17:11 1.0K 
[ ]index_bam.library=H3K4me1_Lung_A.out2017-10-17 20:36 846  
[ ]index_bam.library=H3K4me1_Lung_B.out2017-10-18 00:14 875  
[ ]index_bam.library=H3K4me3_Lung_A.out2017-10-17 20:18 846  
[ ]index_bam.library=H3K4me3_Lung_B.out2017-10-18 00:14 899  
[ ]index_bam.library=H3K27ac_Lung_A.out2017-10-17 20:31 880  
[ ]index_bam.library=H3K27ac_Lung_B.out2017-10-17 20:16 880  
[ ]index_bam.library=H3K27me3_Lung_A.out2017-10-19 17:28 900  
[ ]index_bam.library=H3K27me3_Lung_B.out2017-10-17 20:34 905  
[ ]index_bam.library=Input_Lung_A.out2017-10-19 17:38 892  
[ ]index_bam.library=Input_Lung_B.out2017-10-17 20:27 878  
[ ]index_bam.library=RNASeq_Lung_A.out2017-10-19 22:50 943  
[ ]index_bam.library=RNASeq_Lung_B.out2017-10-19 22:50 948  
[ ]jaccard_matrix.assay=DNaseSeq.out2017-10-25 11:52 1.1K 
[ ]jaccard_matrix.assay=H3K4me1.out2017-10-24 16:05 1.2K 
[ ]jaccard_matrix.assay=H3K4me3.out2017-10-24 16:05 1.2K 
[ ]jaccard_matrix.assay=H3K27ac.out2017-10-24 16:05 1.1K 
[ ]jaccard_matrix.assay=H3K27me3.out2017-10-24 16:05 1.2K 
[ ]jaccard_matrix_idr.prefix=H3K4me1_Lung.out2017-11-06 15:21 1.4K 
[ ]jaccard_matrix_idr.prefix=H3K4me3_Lung.out2017-11-07 10:00 1.4K 
[ ]learn_model..out2017-11-17 15:20 16K 
[ ]learn_model.type=Bam,states=10.out2017-11-17 17:43 17K 
[ ]learn_model.type=Bed,states=10.out2017-11-17 17:15 17K 
[ ]learn_model.type=IDR,states=10.out2017-11-17 16:58 15K 
[ ]make_alignment_report.assay=DNaseSeq.out2017-10-25 11:56 1.3K 
[ ]make_alignment_report.assay=H3K4me1.out2017-10-18 00:46 1.2K 
[ ]make_alignment_report.assay=H3K4me3.out2017-10-18 00:46 1.2K 
[ ]make_alignment_report.assay=H3K27ac.out2017-10-17 20:39 1.2K 
[ ]make_alignment_report.assay=H3K27me3.out2017-10-19 17:31 1.2K 
[ ]make_alignment_report.assay=Input.out2017-10-19 17:40 1.2K 
[ ]make_alignment_report.assay=RNASeq.out2017-10-19 22:56 1.3K 
[ ]make_idr_peak_summary_report.assay=H3K4me1.out2017-11-06 13:30 1.4K 
[ ]make_idr_peak_summary_report.assay=H3K4me3.out2017-10-30 18:03 1.3K 
[ ]make_idr_peak_summary_report.assay=H3K27ac.out2017-10-30 18:03 1.3K 
[ ]make_idr_peak_summary_report.assay=H3K27me3.out2017-11-06 13:35 1.4K 
[ ]make_peak_summary_report.assay=DNaseSeq.out2017-10-25 12:36 1.0K 
[ ]make_peak_summary_report.assay=H3K4me1.out2017-10-24 16:40 1.1K 
[ ]make_peak_summary_report.assay=H3K4me3.out2017-10-24 16:41 1.1K 
[ ]make_peak_summary_report.assay=H3K27ac.out2017-10-24 16:41 1.0K 
[ ]make_peak_summary_report.assay=H3K27me3.out2017-10-24 16:41 1.1K 
[ ]make_quality_metrics_report.assay=DNaseSeq.out2017-10-25 12:57 1.1K 
[ ]make_quality_metrics_report.assay=H3K4me1.out2017-10-19 19:54 1.0K 
[ ]make_quality_metrics_report.assay=H3K4me3.out2017-11-20 12:53 1.4K 
[ ]make_quality_metrics_report.assay=H3K27ac.out2017-10-19 19:54 1.0K 
[ ]make_quality_metrics_report.assay=H3K27me3.out2017-10-19 19:51 1.0K 
[ ]make_tss_gtf.library=RNASeq_Lung_A.out2017-11-18 11:55 1.3K 
[ ]make_tss_gtf.library=RNASeq_Lung_B.out2017-11-18 12:25 1.3K 
[ ]mark_duplicates.library=DNaseSeq_Lung_A.out2017-10-24 17:20 21K 
[ ]mark_duplicates.library=DNaseSeq_Lung_B.out2017-10-24 17:06 13K 
[ ]mark_duplicates.library=H3K4me1_Lung_A.out2017-10-17 20:02 7.7K 
[ ]mark_duplicates.library=H3K4me1_Lung_B.out2017-10-17 20:07 8.0K 
[ ]mark_duplicates.library=H3K4me3_Lung_A.out2017-10-17 20:11 7.2K 
[ ]mark_duplicates.library=H3K4me3_Lung_B.out2017-10-17 20:05 7.7K 
[ ]mark_duplicates.library=H3K27ac_Lung_A.out2017-10-17 19:59 7.7K 
[ ]mark_duplicates.library=H3K27ac_Lung_B.out2017-10-17 20:07 7.5K 
[ ]mark_duplicates.library=H3K27me3_Lung_A.out2017-10-19 17:26 8.0K 
[ ]mark_duplicates.library=H3K27me3_Lung_B.out2017-10-17 20:01 7.2K 
[ ]mark_duplicates.library=Input_Lung_A.out2017-10-19 17:34 8.9K 
[ ]mark_duplicates.library=Input_Lung_B.out2017-10-17 20:00 7.2K 
[ ]multibigwig_summary.assay=DNaseSeq.out2017-10-25 11:52 1.2K 
[ ]multibigwig_summary.assay=H3K4me1.out2017-10-19 19:46 1.2K 
[ ]multibigwig_summary.assay=H3K4me3.out2017-10-19 19:46 1.2K 
[ ]multibigwig_summary.assay=H3K27ac.out2017-10-19 19:46 1.2K 
[ ]multibigwig_summary.assay=H3K27me3.out2017-10-19 19:46 1.2K 
[ ]multibigwig_summary.assay=Input.out2017-10-19 19:46 1.2K 
[ ]multibigwig_summary.assay=RNASeq.out2017-10-24 16:41 1.2K 
[ ]multibigwig_vs_input_summary.assay=H3K4me1.out2017-10-19 19:46 1.2K 
[ ]multibigwig_vs_input_summary.assay=H3K4me3.out2017-10-19 19:46 1.2K 
[ ]multibigwig_vs_input_summary.assay=H3K27ac.out2017-10-19 19:46 1.2K 
[ ]multibigwig_vs_input_summary.assay=H3K27me3.out2017-10-19 19:46 1.2K 
[ ]overlap_genes_with_peaks.library=DNaseSeq_Lung_A.out2017-10-25 11:51 1.1K 
[ ]overlap_genes_with_peaks.library=DNaseSeq_Lung_B.out2017-10-24 17:18 1.1K 
[ ]overlap_genes_with_peaks.library=H3K4me1_Lung_A.out2017-10-24 16:40 1.1K 
[ ]overlap_genes_with_peaks.library=H3K4me3_Lung_A.out2017-10-24 16:40 1.1K 
[ ]overlap_genes_with_peaks.library=H3K4me3_Lung_B.out2017-10-24 16:40 1.1K 
[ ]overlap_genes_with_peaks.library=H3K27ac_Lung_A.out2017-10-24 16:40 1.1K 
[ ]overlap_genes_with_peaks.library=H3K27ac_Lung_B.out2017-10-24 16:40 1.1K 
[ ]overlap_genes_with_peaks.library=H3K27me3_Lung_A.out2017-10-24 16:40 1.1K 
[ ]overlap_genes_without_peaks.library=DNaseSeq_Lung_A.out2017-10-25 11:51 1.1K 
[ ]overlap_genes_without_peaks.library=DNaseSeq_Lung_B.out2017-10-24 17:18 1.1K 
[ ]overlap_genes_without_peaks.library=H3K4me1_Lung_A.out2017-10-24 16:40 1.1K 
[ ]overlap_genes_without_peaks.library=H3K4me3_Lung_A.out2017-10-24 16:40 1.1K 
[ ]overlap_genes_without_peaks.library=H3K4me3_Lung_B.out2017-10-24 16:40 1.1K 
[ ]overlap_genes_without_peaks.library=H3K27ac_Lung_A.out2017-10-24 16:40 1.1K 
[ ]overlap_genes_without_peaks.library=H3K27ac_Lung_B.out2017-10-24 16:40 1.1K 
[ ]overlap_genes_without_peaks.library=H3K27me3_Lung_A.out2017-10-24 16:40 1.1K 
[ ]overlap_peaks_with_replicate_fe.library=DNaseSeq_Lung_A.out2017-10-25 12:01 1.3K 
[ ]overlap_peaks_with_replicate_fe.library=DNaseSeq_Lung_B.out2017-10-25 12:01 1.3K 
[ ]overlap_peaks_with_replicate_fe.library=H3K4me1_Lung_A.out2017-10-24 16:07 1.3K 
[ ]overlap_peaks_with_replicate_fe.library=H3K4me1_Lung_B.out2017-10-24 16:05 1.3K 
[ ]overlap_peaks_with_replicate_fe.library=H3K4me3_Lung_A.out2017-10-24 16:07 1.2K 
[ ]overlap_peaks_with_replicate_fe.library=H3K4me3_Lung_B.out2017-10-24 16:07 1.3K 
[ ]overlap_peaks_with_replicate_fe.library=H3K27ac_Lung_A.out2017-10-24 16:07 1.3K 
[ ]overlap_peaks_with_replicate_fe.library=H3K27ac_Lung_B.out2017-10-24 16:07 1.3K 
[ ]overlap_peaks_with_replicate_fe.library=H3K27me3_Lung_A.out2017-10-24 16:07 1.2K 
[ ]overlap_peaks_with_replicate_fe.library=H3K27me3_Lung_B.out2017-10-24 16:05 1.2K 
[ ]plot_heatmap.tissue=Lung,rep=A.out2017-11-30 18:17 1.8K 
[ ]pooled_peaks.assay=H3K4me3,tissue=Lung.out2017-11-06 15:37 1.8K 
[ ]pooled_peaks.assay=H3K27ac,tissue=Lung.out2017-10-30 17:59 1.8K 
[ ]pooled_peaks_broad.assay=H3K4me1,tissue=Lung.out2017-11-06 15:13 1.8K 
[ ]pooled_peaks_broad.assay=H3K27me3,tissue=Lung.out2017-11-06 13:26 1.8K 
[ ]pooled_pseudo_peaks.assay=H3K4me3,tissue=Lung.out2017-11-06 15:44 1.8K 
[ ]pooled_pseudo_peaks.assay=H3K27ac,tissue=Lung.out2017-10-30 18:01 1.8K 
[ ]pooled_pseudo_peaks_broad.assay=H3K4me1,tissue=Lung.out2017-11-06 15:13 1.8K 
[ ]pooled_pseudo_peaks_broad.assay=H3K27me3,tissue=Lung.out2017-11-06 13:26 1.8K 
[ ]remove_duplicates.library=DNaseSeq_Lung_A.out2017-10-24 17:27 1.1K 
[ ]remove_duplicates.library=DNaseSeq_Lung_B.out2017-10-24 17:11 1.1K 
[ ]remove_duplicates.library=H3K4me1_Lung_A.out2017-10-17 20:34 893  
[ ]remove_duplicates.library=H3K4me1_Lung_B.out2017-10-17 20:38 912  
[ ]remove_duplicates.library=H3K4me3_Lung_A.out2017-10-17 20:15 893  
[ ]remove_duplicates.library=H3K4me3_Lung_B.out2017-10-17 20:36 893  
[ ]remove_duplicates.library=H3K27ac_Lung_A.out2017-10-17 20:28 912  
[ ]remove_duplicates.library=H3K27ac_Lung_B.out2017-10-17 20:13 893  
[ ]remove_duplicates.library=H3K27me3_Lung_A.out2017-10-19 17:28 913  
[ ]remove_duplicates.library=H3K27me3_Lung_B.out2017-10-17 20:32 894  
[ ]remove_duplicates.library=Input_Lung_A.out2017-10-19 17:37 905  
[ ]remove_duplicates.library=Input_Lung_B.out2017-10-17 20:26 910  
[ ]rename_peak_calls.library=DNaseSeq_Lung_A.out2017-10-25 11:51 1.0K 
[ ]rename_peak_calls.library=DNaseSeq_Lung_B.out2017-10-24 17:17 1.0K 
[ ]rename_peak_calls.library=H3K4me1_Lung_A.out2017-10-19 22:48 930  
[ ]rename_peak_calls.library=H3K4me1_Lung_B.out2017-10-19 22:48 922  
[ ]rename_peak_calls.library=H3K4me3_Lung_A.out2017-10-19 22:48 971  
[ ]rename_peak_calls.library=H3K4me3_Lung_B.out2017-10-19 22:48 931  
[ ]rename_peak_calls.library=H3K27ac_Lung_A.out2017-10-19 22:48 931  
[ ]rename_peak_calls.library=H3K27ac_Lung_B.out2017-10-19 19:54 971  
[ ]rename_peak_calls.library=H3K27me3_Lung_A.out2017-10-19 22:48 970  
[ ]rename_peak_calls.library=H3K27me3_Lung_B.out2017-10-19 19:55 1.0K 
[ ]rna_bam_coverage.sample=Lung_A.out2017-11-30 13:15 1.9K 
[ ]sort_bam.library=DNaseSeq_Lung_A.out2017-10-24 16:57 1.1K 
[ ]sort_bam.library=DNaseSeq_Lung_B.out2017-10-24 16:46 1.0K 
[ ]sort_bam.library=H3K4me1_Lung_A.out2017-10-17 19:49 903  
[ ]sort_bam.library=H3K4me1_Lung_B.out2017-10-17 19:54 879  
[ ]sort_bam.library=H3K4me3_Lung_A.out2017-10-17 20:04 903  
[ ]sort_bam.library=H3K4me3_Lung_B.out2017-10-17 19:54 903  
[ ]sort_bam.library=H3K27ac_Lung_A.out2017-10-17 19:46 884  
[ ]sort_bam.library=H3K27ac_Lung_B.out2017-10-17 19:59 884  
[ ]sort_bam.library=H3K27me3_Lung_A.out2017-10-19 17:18 899  
[ ]sort_bam.library=H3K27me3_Lung_B.out2017-10-17 19:46 880  
[ ]sort_bam.library=Input_Lung_A.out2017-10-19 17:20 896  
[ ]sort_bam.library=Input_Lung_B.out2017-10-17 19:46 877  
[ ]spp_stats.library=DNaseSeq_Lung_A.out2017-10-24 17:52 2.6K 
[ ]spp_stats.library=DNaseSeq_Lung_B.out2017-10-24 17:25 2.5K 
[ ]spp_stats.library=H3K4me1_Lung_A.out2017-10-19 19:29 2.3K 
[ ]spp_stats.library=H3K4me1_Lung_B.out2017-10-19 19:28 2.3K 
[ ]spp_stats.library=H3K4me3_Lung_A.out2017-10-19 19:27 2.2K 
[ ]spp_stats.library=H3K4me3_Lung_B.out2017-10-19 19:28 2.3K 
[ ]spp_stats.library=H3K27ac_Lung_A.out2017-10-19 19:28 2.2K 
[ ]spp_stats.library=H3K27ac_Lung_B.out2017-10-19 19:27 2.3K 
[ ]spp_stats.library=H3K27me3_Lung_A.out2017-10-19 19:29 2.3K 
[ ]spp_stats.library=H3K27me3_Lung_B.out2017-10-19 19:27 2.3K 
[ ]star_align.library=DNaseSeq_Lung_A.out2017-10-19 19:28 1.1K 
[ ]star_align.library=DNaseSeq_Lung_B.out2017-10-19 17:32 1.1K 
[ ]star_align.library=RNASeq_Lung_A.out2017-10-19 19:41 1.1K 
[ ]star_align.library=RNASeq_Lung_B.out2017-10-19 19:43 1.1K 
[ ]star_index..out2017-10-19 17:00 1.6K 
[ ]stringtie.library=RNASeq_Lung_A.out2017-10-19 22:55 1.1K 
[ ]stringtie.library=RNASeq_Lung_B.out2017-10-19 22:55 1.1K 
[ ]stringtie_merge..out2017-10-24 16:05 1.1K 
[ ]stringtie_quant.library=RNASeq_Lung_A.out2017-10-24 16:11 1.2K 
[ ]stringtie_quant.library=RNASeq_Lung_B.out2017-10-24 16:11 1.2K 
[ ]tissue_marks..out2017-11-17 15:02 1.2K 
[ ]tissue_marks_bam..out2017-11-17 17:17 1.2K 
[ ]tissue_marks_bed..out2017-11-17 17:05 1.2K 
[ ]tissue_marks_idr..out2017-11-17 16:31 1.2K 
[ ]trim_paired_reads.library=DNaseSeq_Lung_A.out2017-10-19 17:48 8.5K 
[ ]trim_paired_reads.library=DNaseSeq_Lung_B.out2017-10-19 17:28 8.5K 
[ ]trim_paired_reads.library=RNASeq_Lung_A.out2017-10-19 19:08 11K 
[ ]trim_paired_reads.library=RNASeq_Lung_B.out2017-10-19 19:14 11K 
[ ]trim_reads.library=H3K27me3_Lung_A.out2017-10-19 17:02 4.7K 
[ ]trim_reads.library=Input_Lung_A.out2017-10-19 17:02 4.6K 
[ ]tss_state_boxplot.states=10,type=Bam,sample=Lung_A.out2017-11-18 12:21 1.4K 
[ ]tss_state_boxplot.states=10,type=Bam,sample=Lung_B.out2017-11-18 12:26 1.4K 
[ ]tss_state_boxplot.states=10,type=Bed,sample=Lung_A.out2017-11-18 12:32 1.4K 
[ ]tss_state_boxplot.states=10,type=Bed,sample=Lung_B.out2017-11-18 12:29 1.3K 
[ ]validate_peaks.library=DNaseSeq_Lung_A.out2017-10-25 12:02 1.0K 
[ ]validate_peaks.library=DNaseSeq_Lung_B.out2017-10-25 12:02 1.1K 
[ ]validate_peaks.library=H3K4me1_Lung_A.out2017-10-24 16:07 1.0K 
[ ]validate_peaks.library=H3K4me1_Lung_B.out2017-10-24 16:05 1.0K 
[ ]validate_peaks.library=H3K4me3_Lung_A.out2017-10-24 16:07 1.1K 
[ ]validate_peaks.library=H3K4me3_Lung_B.out2017-10-24 16:08 1.1K 
[ ]validate_peaks.library=H3K27ac_Lung_A.out2017-10-24 16:08 1.1K 
[ ]validate_peaks.library=H3K27ac_Lung_B.out2017-10-24 16:08 1.1K 
[ ]validate_peaks.library=H3K27me3_Lung_A.out2017-10-24 16:07 1.1K 
[ ]validate_peaks.library=H3K27me3_Lung_B.out2017-10-24 16:05 1.1K 
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