ChromHMM Report

Input Directory: Binarized_Data
Output Directory: Model_12
Number of States: 12
Assembly: Sscrofa_Ensembl
Full ChromHMM command: LearnModel -p 24 -init random -l Chromosome_Lengths.txt Binarized_Data Model_12 12 Sscrofa_Ensembl

Model Parameters


  • Emission Parameter SVG File
  • Emission Parameter Tab-Delimited Text File

  • Transition Parameter SVG File
  • Transition Parameter Tab-Delimited Text File

  • All Model Parameters Tab-Delimited Text File

    Genome Segmentation Files

  • LiverA_12_999 Segmentation File (Four Column Bed File)

    Custom Tracks for loading into the UCSC Genome Browser:
  • LiverA_12_999 Browser Custom Track Dense File
  • LiverA_12_999 Browser Custom Track Expanded File

    State Enrichments

    LiverA_12_999 Enrichments


  • LiverA_12_999 Overlap Enrichment SVG File
  • LiverA_12_999 Overlap Enrichment Tab-Delimited Text File

  • LiverA_12_999_TES_neighborhood Enrichment SVG File
  • LiverA_12_999_TES_neighborhood Enrichment Tab-Delimited Text File

  • LiverA_12_999_TSS_neighborhood Enrichment SVG File
  • LiverA_12_999_TSS_neighborhood Enrichment Tab-Delimited Text File