ChromHMM Report

Input Directory: ChromHMM/Binarized_Data_IDR
Output Directory: ChromHMM/Model_IDR_12
Number of States: 12
Assembly: galGal5_Ensembl
Full ChromHMM command: LearnModel -p 24 -l ChromHMM/Chromosome_Lengths.txt ChromHMM/Binarized_Data_IDR ChromHMM/Model_IDR_12 12 galGal5_Ensembl

Model Parameters


  • Emission Parameter SVG File
  • Emission Parameter Tab-Delimited Text File

  • Transition Parameter SVG File
  • Transition Parameter Tab-Delimited Text File

  • All Model Parameters Tab-Delimited Text File

    Genome Segmentation Files

  • Liver_12 Segmentation File (Four Column Bed File)

    Custom Tracks for loading into the UCSC Genome Browser:
  • Liver_12 Browser Custom Track Dense File
  • Liver_12 Browser Custom Track Expanded File

    State Enrichments

    Liver_12 Enrichments


  • Liver_12 Overlap Enrichment SVG File
  • Liver_12 Overlap Enrichment Tab-Delimited Text File

  • Liver_12_TES_neighborhood Enrichment SVG File
  • Liver_12_TES_neighborhood Enrichment Tab-Delimited Text File

  • Liver_12_TSS_neighborhood Enrichment SVG File
  • Liver_12_TSS_neighborhood Enrichment Tab-Delimited Text File