ASSEMBLY                = /home/ckern/FAANG_Project/Chicken_Ensembl/Genome/Galgal5.fa
ANNOTATION              = /home/ckern/FAANG_Project/Chicken_Ensembl/Genome/Galgal5.gtf
GENOME_SIZE             = 1.02e9
FRAGMENT_LENGTH         = 200
BROAD_PEAKS_NO_INPUT    = DNaseSeq
BROAD_PEAKS_WITH_INPUT  = H3K27me3 H3K4me1
NARROW_PEAKS_WITH_INPUT = H3K4me3 NewH3K4me3 H3K27ac CTCF
H3K4me3_INPUT           = Input
H3K27me3_INPUT          = Input
H3K27ac_INPUT           = Input2
H3K4me1_INPUT           = Input2
CTCF_INPUT              = InputCTCF
NewH3K4me3_INPUT        = Input2
MAPQ = 30