Tissue    Rep      Raw Reads           Trimmed Reads           Aligned Reads          Filtered Reads
         ACC112      1     25,478,356     25,174,748 ( 98.8%)     24,778,336 ( 98.4%)     20,101,190 ( 81.1%)
         ACC112      2     20,552,469     19,842,710 ( 96.5%)     19,405,803 ( 97.8%)     15,328,066 ( 79.0%)
          CACO2      1     19,629,030     19,414,083 ( 98.9%)     18,900,206 ( 97.4%)     14,949,288 ( 79.1%)
          CACO2      2     17,173,553     17,001,805 ( 99.0%)     16,305,841 ( 95.9%)     12,929,435 ( 79.3%)
          DOHH2      1     34,568,183     33,668,593 ( 97.4%)     32,583,921 ( 96.8%)     26,423,559 ( 81.1%)
          DOHH2      2     40,110,043     38,920,947 ( 97.0%)     38,390,656 ( 98.6%)     31,257,635 ( 81.4%)
        GM12878      1     14,462,737     14,364,115 ( 99.3%)     13,703,050 ( 95.4%)     10,912,154 ( 79.6%)
        GM12878      2     19,084,695     18,946,934 ( 99.3%)     18,506,826 ( 97.7%)     14,795,042 ( 79.9%)