Tissue    Rep      Raw Reads           Trimmed Reads           Aligned Reads          Filtered Reads
         ACC112     1b     34,013,778     33,173,548 ( 97.5%)     32,448,609 ( 97.8%)     26,839,956 ( 82.7%)
         ACC112      1     33,617,911     32,484,272 ( 96.6%)     31,755,260 ( 97.8%)     25,413,526 ( 80.0%)
         ACC112      2     15,086,162     14,799,794 ( 98.1%)     14,559,447 ( 98.4%)     13,016,814 ( 89.4%)
          CACO2      1     15,847,276     15,160,978 ( 95.7%)     14,717,511 ( 97.1%)     12,914,991 ( 87.8%)
          CACO2      2     15,932,750     15,657,354 ( 98.3%)     15,236,113 ( 97.3%)     13,302,120 ( 87.3%)
          DOHH2      1     27,694,840     26,877,844 ( 97.1%)     26,518,191 ( 98.7%)     21,632,693 ( 81.6%)
          DOHH2      2     45,939,788     44,294,019 ( 96.4%)     43,420,748 ( 98.0%)     36,177,770 ( 83.3%)
        GM12878      1     25,260,157     24,763,266 ( 98.0%)     24,138,158 ( 97.5%)     20,496,188 ( 84.9%)
        GM12878      2     22,812,883     22,273,098 ( 97.6%)     20,356,994 ( 91.4%)     17,398,035 ( 85.5%)