Tissue    Rep      Raw Reads           Trimmed Reads           Aligned Reads          Filtered Reads
         ACC112     1b     25,176,914     24,823,576 ( 98.6%)     24,356,240 ( 98.1%)     19,641,293 ( 80.6%)
         ACC112      1     25,176,914     24,823,576 ( 98.6%)     24,356,240 ( 98.1%)     19,641,293 ( 80.6%)
         ACC112      2     62,835,948     62,563,455 ( 99.6%)     61,236,659 ( 97.9%)     54,391,712 ( 88.8%)
          CACO2      1     17,312,913     17,283,398 ( 99.8%)     17,050,976 ( 98.7%)     13,268,923 ( 77.8%)
          CACO2      2     17,312,913     17,283,398 ( 99.8%)     17,050,976 ( 98.7%)     13,268,923 ( 77.8%)
          DOHH2      1     34,229,117     33,301,960 ( 97.3%)     32,538,415 ( 97.7%)     25,473,961 ( 78.3%)
          DOHH2      2     39,454,617     36,455,325 ( 92.4%)     36,019,481 ( 98.8%)     28,419,939 ( 78.9%)
        GM12878      1     16,990,693     16,810,501 ( 98.9%)     16,568,386 ( 98.6%)     12,706,079 ( 76.7%)
        GM12878      2     16,990,693     16,810,501 ( 98.9%)     16,568,386 ( 98.6%)     12,706,079 ( 76.7%)