ChromHMM Report
Input Directory: Binarized_Data
Output Directory: Model_16
Number of States: 12
Assembly: Sscrofa_Ensembl
Full ChromHMM command: LearnModel -p 24 -init random -l Chromosome_Lengths.txt Binarized_Data Model_16 12 Sscrofa_Ensembl
Model Parameters
Emission Parameter SVG File
Emission Parameter Tab-Delimited Text File
Transition Parameter SVG File
Transition Parameter Tab-Delimited Text File
All Model Parameters Tab-Delimited Text File
Genome Segmentation Files
LiverP348_12_999 Segmentation File (Four Column Bed File)
LiverP350_12_999 Segmentation File (Four Column Bed File)
LungP348_12_999 Segmentation File (Four Column Bed File)
LungP350_12_999 Segmentation File (Four Column Bed File)
SpleenP348_12_999 Segmentation File (Four Column Bed File)
SpleenP350_12_999 Segmentation File (Four Column Bed File)
Custom Tracks for loading into the UCSC Genome Browser:
LiverP348_12_999 Browser Custom Track Dense File
LiverP348_12_999 Browser Custom Track Expanded File
LiverP350_12_999 Browser Custom Track Dense File
LiverP350_12_999 Browser Custom Track Expanded File
LungP348_12_999 Browser Custom Track Dense File
LungP348_12_999 Browser Custom Track Expanded File
LungP350_12_999 Browser Custom Track Dense File
LungP350_12_999 Browser Custom Track Expanded File
SpleenP348_12_999 Browser Custom Track Dense File
SpleenP348_12_999 Browser Custom Track Expanded File
SpleenP350_12_999 Browser Custom Track Dense File
SpleenP350_12_999 Browser Custom Track Expanded File
State Enrichments
LiverP348_12_999 Enrichments
LiverP348_12_999 Overlap Enrichment SVG File
LiverP348_12_999 Overlap Enrichment Tab-Delimited Text File
LiverP348_12_999_TES_neighborhood Enrichment SVG File
LiverP348_12_999_TES_neighborhood Enrichment Tab-Delimited Text File
LiverP348_12_999_TSS_neighborhood Enrichment SVG File
LiverP348_12_999_TSS_neighborhood Enrichment Tab-Delimited Text File
LiverP350_12_999 Enrichments
LiverP350_12_999 Overlap Enrichment SVG File
LiverP350_12_999 Overlap Enrichment Tab-Delimited Text File
LiverP350_12_999_TES_neighborhood Enrichment SVG File
LiverP350_12_999_TES_neighborhood Enrichment Tab-Delimited Text File
LiverP350_12_999_TSS_neighborhood Enrichment SVG File
LiverP350_12_999_TSS_neighborhood Enrichment Tab-Delimited Text File
LungP348_12_999 Enrichments
LungP348_12_999 Overlap Enrichment SVG File
LungP348_12_999 Overlap Enrichment Tab-Delimited Text File
LungP348_12_999_TES_neighborhood Enrichment SVG File
LungP348_12_999_TES_neighborhood Enrichment Tab-Delimited Text File
LungP348_12_999_TSS_neighborhood Enrichment SVG File
LungP348_12_999_TSS_neighborhood Enrichment Tab-Delimited Text File
LungP350_12_999 Enrichments
LungP350_12_999 Overlap Enrichment SVG File
LungP350_12_999 Overlap Enrichment Tab-Delimited Text File
LungP350_12_999_TES_neighborhood Enrichment SVG File
LungP350_12_999_TES_neighborhood Enrichment Tab-Delimited Text File
LungP350_12_999_TSS_neighborhood Enrichment SVG File
LungP350_12_999_TSS_neighborhood Enrichment Tab-Delimited Text File
SpleenP348_12_999 Enrichments
SpleenP348_12_999 Overlap Enrichment SVG File
SpleenP348_12_999 Overlap Enrichment Tab-Delimited Text File
SpleenP348_12_999_TES_neighborhood Enrichment SVG File
SpleenP348_12_999_TES_neighborhood Enrichment Tab-Delimited Text File
SpleenP348_12_999_TSS_neighborhood Enrichment SVG File
SpleenP348_12_999_TSS_neighborhood Enrichment Tab-Delimited Text File
SpleenP350_12_999 Enrichments
SpleenP350_12_999 Overlap Enrichment SVG File
SpleenP350_12_999 Overlap Enrichment Tab-Delimited Text File
SpleenP350_12_999_TES_neighborhood Enrichment SVG File
SpleenP350_12_999_TES_neighborhood Enrichment Tab-Delimited Text File
SpleenP350_12_999_TSS_neighborhood Enrichment SVG File
SpleenP350_12_999_TSS_neighborhood Enrichment Tab-Delimited Text File
