Information for 2-CCGGGGTCAA (Motif 17)

T A G C A T G C C A T G T C A G T A C G T A C G A C G T T A G C C T G A G C T A
Reverse Opposite:
C G A T A G C T A T C G T G C A A T G C A T G C A G T C G T A C T A C G A T C G
p-value:1e-2
log p-value:-5.696e+00
Information Content per bp:1.648
Number of Target Sequences with motif549.0
Percentage of Target Sequences with motif11.12%
Number of Background Sequences with motif2178.0
Percentage of Background Sequences with motif9.94%
Average Position of motif in Targets912.0 +/- 989.4bp
Average Position of motif in Background1409.8 +/- 2299.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0030.1_Hnf4a_1/Jaspar

Match Rank:1
Score:0.88
Offset:-3
Orientation:forward strand
Alignment:---CCGGGGTCAA----
CTCCAGGGGTCAATTGA
 A C G T A C G T A C G T T A G C A T G C C A T G T C A G T A C G T A C G A C G T T A G C C T G A G C T A A C G T A C G T A C G T A C G T
A T G C C A G T A G C T T G A C G T C A T C A G C T A G A C T G A C T G A C G T A G T C T G C A G T C A A G C T G C A T C A T G T G C A

PB0057.1_Rxra_1/Jaspar

Match Rank:2
Score:0.80
Offset:-3
Orientation:reverse strand
Alignment:---CCGGGGTCAA----
NTNNNGGGGTCANGNNN
 A C G T A C G T A C G T T A G C A T G C C A T G T C A G T A C G T A C G A C G T T A G C C T G A G C T A A C G T A C G T A C G T A C G T
T C G A C A G T A G C T C T G A G C T A T C A G C T A G A C T G A C T G A C G T A G T C C T G A G T A C T C A G C G T A T A G C G C T A

Hr46/dmmpmm(Bergman)/fly

Match Rank:3
Score:0.80
Offset:3
Orientation:forward strand
Alignment:CCGGGGTCAA
---GGGTCA-
 T A G C A T G C C A T G T C A G T A C G T A C G A C G T T A G C C T G A G C T A
A C G T A C G T A C G T A C T G A C T G A C T G A C G T A G T C C G T A A C G T

usp/dmmpmm(Bergman)/fly

Match Rank:4
Score:0.79
Offset:2
Orientation:forward strand
Alignment:CCGGGGTCAA-
--GGGGTCACG
 T A G C A T G C C A T G T C A G T A C G T A C G A C G T T A G C C T G A G C T A A C G T
A C G T A C G T T A C G C T A G A C T G A C T G A C G T A G T C C T G A G A T C T A C G

usp/MA0016.1/Jaspar

Match Rank:5
Score:0.79
Offset:2
Orientation:forward strand
Alignment:CCGGGGTCAA--
--GGGGTCACGG
 T A G C A T G C C A T G T C A G T A C G T A C G A C G T T A G C C T G A G C T A A C G T A C G T
A C G T A C G T A T C G C A T G A C T G A C T G A C G T A G T C C T G A G A T C T A C G A T C G

PB0157.1_Rara_2/Jaspar

Match Rank:6
Score:0.78
Offset:-3
Orientation:forward strand
Alignment:---CCGGGGTCAA---
AGAGCGGGGTCAAGTA
 A C G T A C G T A C G T T A G C A T G C C A T G T C A G T A C G T A C G A C G T T A G C C T G A G C T A A C G T A C G T A C G T
G T C A C A T G G T C A C A T G A G T C A T C G T A C G A C T G C A T G C G A T A G T C C T G A G T C A A C T G A C G T G T C A

PB0153.1_Nr2f2_2/Jaspar

Match Rank:7
Score:0.78
Offset:-3
Orientation:forward strand
Alignment:---CCGGGGTCAA---
CGCGCCGGGTCACGTA
 A C G T A C G T A C G T T A G C A T G C C A T G T C A G T A C G T A C G A C G T T A G C C T G A G C T A A C G T A C G T A C G T
T A G C A C T G T G A C A C T G A G T C A T G C C T A G A C T G A C T G A C G T A G T C C T G A T A G C A C T G A G C T G C T A

PB0118.1_Esrra_2/Jaspar

Match Rank:8
Score:0.77
Offset:-3
Orientation:forward strand
Alignment:---CCGGGGTCAA----
GGCGAGGGGTCAAGGGC
 A C G T A C G T A C G T T A G C A T G C C A T G T C A G T A C G T A C G A C G T T A G C C T G A G C T A A C G T A C G T A C G T A C G T
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:9
Score:0.77
Offset:1
Orientation:forward strand
Alignment:CCGGGGTCAA
-AGRGGTCA-
 T A G C A T G C C A T G T C A G T A C G T A C G A C G T T A G C C T G A G C T A
A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T

WRKY63/MA1092.1/Jaspar

Match Rank:10
Score:0.75
Offset:3
Orientation:forward strand
Alignment:CCGGGGTCAA-
---CGGTCAAC
 T A G C A T G C C A T G T C A G T A C G T A C G A C G T T A G C C T G A G C T A A C G T
A C G T A C G T A C G T G A T C C T A G A C T G A C G T A G T C C G T A C G T A A T G C