Information for 2-CTGCCAGGAGCA (Motif 2)

T A G C G C A T A T C G T A G C A G T C C G T A C A T G T C A G C G T A C T A G T A G C G T C A
Reverse Opposite:
C A G T A T C G G A T C G C A T A G T C G T A C G C A T T C A G A T C G T A G C C G T A A T C G
p-value:1e-12
log p-value:-2.876e+01
Information Content per bp:1.569
Number of Target Sequences with motif104.0
Percentage of Target Sequences with motif2.11%
Number of Background Sequences with motif208.7
Percentage of Background Sequences with motif0.95%
Average Position of motif in Targets808.3 +/- 746.9bp
Average Position of motif in Background1693.2 +/- 2055.7bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SRSF9(RRM)/Homo_sapiens-RNCMPT00074-PBM/HughesRNA

Match Rank:1
Score:0.65
Offset:5
Orientation:forward strand
Alignment:CTGCCAGGAGCA
-----AGGAGCA
 T A G C G C A T A T C G T A G C A G T C C G T A C A T G T C A G C G T A C T A G T A G C G T C A
A C G T A C G T A C G T A C G T A C G T C G T A C A T G C T A G C G T A T A C G G T A C C T G A

ttk/dmmpmm(Papatsenko)/fly

Match Rank:2
Score:0.65
Offset:2
Orientation:forward strand
Alignment:CTGCCAGGAGCA
--GCCAGGACC-
 T A G C G C A T A T C G T A G C A G T C C G T A C A T G T C A G C G T A C T A G T A G C G T C A
A C G T A C G T T A C G A T C G T G A C C T G A A C T G A C T G C G T A A G T C G T A C A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CTGCCAGGAGCA
TTGCCAAG----
 T A G C G C A T A T C G T A G C A G T C C G T A C A T G T C A G C G T A C T A G T A G C G T C A
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T

Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CTGCCAGGAGCA
CTTCCNGGAA--
 T A G C G C A T A T C G T A G C A G T C C G T A C A T G T C A G C G T A C T A G T A G C G T C A
A G T C G A C T C A G T G T A C A G T C A T C G T C A G A C T G G T C A C G T A A C G T A C G T

RAV1(2)(AP2/EREBP)/Arabidopsis thaliana/AthaMap

Match Rank:5
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CTGCCAGGAGCA
GNNTCAGGTGAN
 T A G C G C A T A T C G T A G C A G T C C G T A C A T G T C A G C G T A C T A G T A G C G T C A
C T A G A T G C A T G C A G C T A G T C C G T A A C T G T C A G G C A T C A T G C T G A C G A T

RAV1(var.2)/MA0583.1/Jaspar

Match Rank:6
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CTGCCAGGAGCA
GNNTCAGGTGAN
 T A G C G C A T A T C G T A G C A G T C C G T A C A T G T C A G C G T A C T A G T A G C G T C A
C T A G A T G C A T G C A G C T A G T C C G T A A C T G T C A G G C A T C A T G C T G A C G A T

odd/dmmpmm(Noyes)/fly

Match Rank:7
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CTGCCAGGAGCA
--AACAGTAGCA
 T A G C G C A T A T C G T A G C A G T C C G T A C A T G T C A G C G T A C T A G T A G C G T C A
A C G T A C G T G T C A T G C A A G T C T C G A C T A G C A G T C G T A A C T G A G T C T G C A

ID4/MA0824.1/Jaspar

Match Rank:8
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CTGCCAGGAGCA
--GACAGGTGTN
 T A G C G C A T A T C G T A G C A G T C C G T A C A T G T C A G C G T A C T A G T A G C G T C A
A C G T A C G T C T A G T C G A A G T C C G T A A T C G A T C G A G C T A C T G A G C T G T C A

Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer

Match Rank:9
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CTGCCAGGAGCA
NNCTTCCNGGAAGN
 A C G T A C G T T A G C G C A T A T C G T A G C A G T C C G T A C A T G T C A G C G T A C T A G T A G C G T C A
A T G C T C G A A G T C A G C T A C G T G T A C A G T C G C T A C T A G C A T G G T C A C T G A T C A G A G T C

MEIS2/MA0774.1/Jaspar

Match Rank:10
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CTGCCAGGAGCA
TTGACAGC----
 T A G C G C A T A T C G T A G C A G T C C G T A C A T G T C A G C G T A C T A G T A G C G T C A
C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T A C G T A C G T A C G T