Information for 6-TGACCTGC (Motif 22)

C G A T A T C G G T C A T A G C A T G C C G A T T A C G T A G C
Reverse Opposite:
A T C G A T G C G C T A A T C G A T C G C A G T T A G C G C T A
p-value:1e0
log p-value:-1.186e+00
Information Content per bp:1.792
Number of Target Sequences with motif232.0
Percentage of Target Sequences with motif4.70%
Number of Background Sequences with motif995.7
Percentage of Background Sequences with motif4.54%
Average Position of motif in Targets918.3 +/- 942.2bp
Average Position of motif in Background1299.1 +/- 1904.5bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:1
Score:0.84
Offset:0
Orientation:reverse strand
Alignment:TGACCTGC
TGACCT--
 C G A T A T C G G T C A T A G C A T G C C G A T T A C G T A G C
A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:2
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:TGACCTGC
TGACCTYA
 C G A T A T C G G T C A T A G C A T G C C G A T T A C G T A G C
A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A

NR4A2/MA0160.1/Jaspar

Match Rank:3
Score:0.79
Offset:-1
Orientation:reverse strand
Alignment:-TGACCTGC
GTGACCTT-
 A C G T C G A T A T C G G T C A T A G C A T G C C G A T T A C G T A G C
A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T

RORA/MA0071.1/Jaspar

Match Rank:4
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:TGACCTGC--
TGACCTTGAT
 C G A T A T C G G T C A T A G C A T G C C G A T T A C G T A G C A C G T A C G T
A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:5
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:TGACCTGC
TGACCYCT
 C G A T A T C G G T C A T A G C A T G C C G A T T A C G T A G C
A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-TGACCTGC-
NTGACCTTGA
 A C G T C G A T A T C G G T C A T A G C A T G C C G A T T A C G T A G C A C G T
C A T G A G C T T A C G G T C A G T A C T A G C A G C T G A C T A T C G T C G A

Esrrg/MA0643.1/Jaspar

Match Rank:7
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-TGACCTGC-
ATGACCTTGA
 A C G T C G A T A T C G G T C A T A G C A T G C C G A T T A C G T A G C A C G T
C G T A G A C T T C A G G T C A T A G C G T A C A G C T G A C T A T C G C T G A

RTG3/Literature(Harbison)/Yeast

Match Rank:8
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-TGACCTGC
GTGACC---
 A C G T C G A T A T C G G T C A T A G C A T G C C G A T T A C G T A G C
A C T G A C G T A C T G C G T A A G T C A G T C A C G T A C G T A C G T

grh/dmmpmm(Papatsenko)/fly

Match Rank:9
Score:0.73
Offset:1
Orientation:forward strand
Alignment:TGACCTGC-
-TACCTGCT
 C G A T A T C G G T C A T A G C A T G C C G A T T A C G T A G C A C G T
A C G T C A G T C G T A A G T C A G T C A C G T A C T G A T G C A G C T

NR2F1/MA0017.2/Jaspar

Match Rank:10
Score:0.72
Offset:-4
Orientation:reverse strand
Alignment:----TGACCTGC-
CNNTTGACCTTTG
 A C G T A C G T A C G T A C G T C G A T A T C G G T C A T A G C A T G C C G A T T A C G T A G C A C G T
G A T C A G T C A G T C C A G T A G C T A C T G C G T A A G T C A T G C A G C T G A C T C G A T C A T G