Information for 3-GAGAGACATGGC (Motif 3)

T C A G C G T A T A C G C G T A A C T G T C G A T A G C G T C A C A G T A T C G C A T G G T A C
Reverse Opposite:
C A T G G T A C T A G C G T C A C A G T A T C G A G C T T G A C G C A T A T G C G C A T A G T C
p-value:1e-11
log p-value:-2.552e+01
Information Content per bp:1.534
Number of Target Sequences with motif52.0
Percentage of Target Sequences with motif1.05%
Number of Background Sequences with motif76.8
Percentage of Background Sequences with motif0.35%
Average Position of motif in Targets820.1 +/- 802.0bp
Average Position of motif in Background1056.5 +/- 1188.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ARF1(ABI3/VP1)/Arabidopsis thaliana/AthaMap

Match Rank:1
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-GAGAGACATGGC
TGGGAGACAAG--
 A C G T T C A G C G T A T A C G C G T A A C T G T C G A T A G C G T C A C A G T A T C G C A T G G T A C
A C G T A C T G A C T G A C T G C G T A A C T G C G T A A G T C C G T A C G T A A C T G A C G T A C G T

SRSF10(RRM)/Homo_sapiens-RNCMPT00090-PBM/HughesRNA

Match Rank:2
Score:0.69
Offset:1
Orientation:forward strand
Alignment:GAGAGACATGGC
-AGAGAAA----
 T C A G C G T A T A C G C G T A A C T G T C G A T A G C G T C A C A G T A T C G C A T G G T A C
A C G T C G T A A C T G C G T A C T A G C G T A T G C A T G C A A C G T A C G T A C G T A C G T

pros/dmmpmm(Bergman)/fly

Match Rank:3
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:GAGAGACATGGC
---AGNCATG--
 T C A G C G T A T A C G C G T A A C T G T C G A T A G C G T C A C A G T A T C G C A T G G T A C
A C G T A C G T A C G T C T G A A C T G G C T A T A G C C T G A C G A T A C T G A C G T A C G T

SRSF10(RRM)/Homo_sapiens-RNCMPT00019-PBM/HughesRNA

Match Rank:4
Score:0.68
Offset:1
Orientation:forward strand
Alignment:GAGAGACATGGC
-AGAGAAA----
 T C A G C G T A T A C G C G T A A C T G T C G A T A G C G T C A C A G T A T C G C A T G G T A C
A C G T C G T A C T A G C G T A C T A G G T C A T G C A T G C A A C G T A C G T A C G T A C G T

BPC1(BBRBPC)/colamp-BPC1-DAP-Seq(GSE60143)/Homer

Match Rank:5
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---GAGAGACATGGC
GARGAGAGAGAA---
 A C G T A C G T A C G T T C A G C G T A T A C G C G T A A C T G T C G A T A G C G T C A C A G T A T C G C A T G G T A C
C A T G G C T A C T A G T A C G C G T A T C A G C G T A A C T G C G T A C A T G C T G A C G T A A C G T A C G T A C G T

SRSF10(RRM)/Homo_sapiens-RNCMPT00089-PBM/HughesRNA

Match Rank:6
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GAGAGACATGGC
-AGAGAAA----
 T C A G C G T A T A C G C G T A A C T G T C G A T A G C G T C A C A G T A T C G C A T G G T A C
A C G T C G T A C T A G C G T A C T A G C T G A T C G A T C G A A C G T A C G T A C G T A C G T

FRS9(ND)/col-FRS9-DAP-Seq(GSE60143)/Homer

Match Rank:7
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GAGAGACATGGC
RGAGAGAGAAAG-
 A C G T T C A G C G T A T A C G C G T A A C T G T C G A T A G C G T C A C A G T A T C G C A T G G T A C
C T A G C T A G T C G A C T A G C G T A A T C G T C G A A C T G C T G A T C G A C T G A T A C G A C G T

GAGA-repeat/Arabidopsis-Promoters/Homer

Match Rank:8
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GAGAGACATGGC
RGAGAGAGAG---
 A C G T T C A G C G T A T A C G C G T A A C T G T C G A T A G C G T C A C A G T A T C G C A T G G T A C
C T G A T A C G C G T A A T C G C G T A A T C G G C T A A T C G C G T A T A C G A C G T A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GAGAGACATGGC
NTGATTGACAGN--
 A C G T A C G T T C A G C G T A T A C G C G T A A C T G T C G A T A G C G T C A C A G T A T C G C A T G G T A C
A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G A C G T A C G T

BPC6(BBRBPC)/col-BPC6-DAP-Seq(GSE60143)/Homer

Match Rank:10
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----GAGAGACATGGC
TAGAGAGAGAGARAR-
 A C G T A C G T A C G T A C G T T C A G C G T A T A C G C G T A A C T G T C G A T A G C G T C A C A G T A T C G C A T G G T A C
C A G T G C T A A C T G C G T A A C T G C G T A A C T G C G T A C T A G C G T A C T A G C G T A C T G A C T G A C T A G A C G T