Information for 4-GGTCAAAGTCCA (Motif 4)

C T A G A C T G G C A T G A T C T G C A T C G A C T G A T C A G A C G T A G T C G T A C G T C A
Reverse Opposite:
C A G T C A T G T C A G T G C A A G T C G A C T A G C T A C G T C T A G C G T A T G A C G A T C
p-value:1e-10
log p-value:-2.529e+01
Information Content per bp:1.595
Number of Target Sequences with motif362.0
Percentage of Target Sequences with motif7.33%
Number of Background Sequences with motif1117.8
Percentage of Background Sequences with motif5.10%
Average Position of motif in Targets891.5 +/- 891.0bp
Average Position of motif in Background1282.3 +/- 2166.0bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hnf4a/MA0114.3/Jaspar

Match Rank:1
Score:0.95
Offset:-2
Orientation:forward strand
Alignment:--GGTCAAAGTCCA--
GGGGTCAAAGTCCAAT
 A C G T A C G T C T A G A C T G G C A T G A T C T G C A T C G A C T G A T C A G A C G T A G T C G T A C G T C A A C G T A C G T
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:2
Score:0.91
Offset:-4
Orientation:forward strand
Alignment:----GGTCAAAGTCCA
CANAGNNCAAAGTCCA
 A C G T A C G T A C G T A C G T C T A G A C T G G C A T G A T C T G C A T C G A C T G A T C A G A C G T A G T C G T A C G T C A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

HNF4G/MA0484.1/Jaspar

Match Rank:3
Score:0.90
Offset:-3
Orientation:forward strand
Alignment:---GGTCAAAGTCCA
AGAGTCCAAAGTCCA
 A C G T A C G T A C G T C T A G A C T G G C A T G A T C T G C A T C G A C T G A T C A G A C G T A G T C G T A C G T C A
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

dHNF4(NR)/Fly-HNF4-ChIP-Seq(GSE73675)/Homer

Match Rank:4
Score:0.86
Offset:-1
Orientation:forward strand
Alignment:-GGTCAAAGTCCA--
GGTCCAAAGTCCAMT
 A C G T C T A G A C T G G C A T G A T C T G C A T C G A C T G A T C A G A C G T A G T C G T A C G T C A A C G T A C G T
T C A G A C T G C A G T A G T C A G T C G T C A C G T A C G T A A C T G C A G T A G T C A G T C C T G A T G C A A G C T

PB0134.1_Hnf4a_2/Jaspar

Match Rank:5
Score:0.84
Offset:0
Orientation:forward strand
Alignment:GGTCAAAGTCCA----
GGCAAAAGTCCAATAA
 C T A G A C T G G C A T G A T C T G C A T C G A C T G A T C A G A C G T A G T C G T A C G T C A A C G T A C G T A C G T A C G T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

RXRG/MA0856.1/Jaspar

Match Rank:6
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--GGTCAAAGTCCA
GGGGTCAAAGGTCA
 A C G T A C G T C T A G A C T G G C A T G A T C T G C A T C G A C T G A T C A G A C G T A G T C G T A C G T C A
T C A G T C A G C A T G C A T G A C G T A G T C C T G A C T G A C T G A C A T G C A T G A C G T A G T C T C G A

Rxra/MA0512.2/Jaspar

Match Rank:7
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--GGTCAAAGTCCA
GGGGTCAAAGGTCA
 A C G T A C G T C T A G A C T G G C A T G A T C T G C A T C G A C T G A T C A G A C G T A G T C G T A C G T C A
T C A G T C A G C A T G C A T G A C G T A G T C T C G A C T G A T C G A A T C G A C T G A C G T A G T C T C G A

RXRB/MA0855.1/Jaspar

Match Rank:8
Score:0.76
Offset:-2
Orientation:forward strand
Alignment:--GGTCAAAGTCCA
GGGGTCAAAGGTCA
 A C G T A C G T C T A G A C T G G C A T G A T C T G C A T C G A C T G A T C A G A C G T A G T C G T A C G T C A
T C A G T C A G C T A G C A T G A C G T A G T C C T G A C T G A T C G A C A T G C A T G A C G T A G T C T C G A

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:9
Score:0.76
Offset:-2
Orientation:forward strand
Alignment:--GGTCAAAGTCCA
GAGGTCAAAGGTCA
 A C G T A C G T C T A G A C T G G C A T G A T C T G C A T C G A C T G A T C A G A C G T A G T C G T A C G T C A
T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A

Nr2f6/MA0677.1/Jaspar

Match Rank:10
Score:0.76
Offset:-2
Orientation:forward strand
Alignment:--GGTCAAAGTCCA
GAGGTCAAAGGTCA
 A C G T A C G T C T A G A C T G G C A T G A T C T G C A T C G A C T G A T C A G A C G T A G T C G T A C G T C A
T C A G T C G A C A T G C A T G A C G T A G T C C G T A C T G A T C G A A C T G C A T G A C G T A G T C C T G A